Rh6AG204800

PWWP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002210
Physical Location & Seq
Reverse (-)
36577487 .. 36577849
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG204800.1

Sequence Viewer

Length: 363 bp
ATGGTGATCATTGGTTCGAAGACGAATTCAAATGCGAATGTAGGGGATGATGAGAATGGCAATTGTTGTGATGAAAACAAGACCAACAGTGGTGGGAACGACGGGGTTGAGGAGAATGGGAAGTCATTGGATGAAATTGGGGGAGAGATAGATGGGGAAACTGAGGTGTTTGAGGTTCCCATTGCTGGTACGAGTGAAAATGGTCAAGACCGGGTGGGAGAAGAGTTGGATGGCAGAGTATGTGAGTTCTGTATTGGAGATTTTGTGTGGGGTAAGATTAAGAACAACCGGTGGTGGTCGGGCCGGATTTGTGATCCTTCAAATGCTTCTGGGCTTGCAGCGAAATTGAGATTGACAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

120

Amino Acids

12.81

Weight (kDa)

4.25

Isoelectric Point (pI)

22.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 308
AcsI RAATTY 1 cut(s) 25
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 185
AgeI ACCGGT 1 cut(s) 288
AgsI TTSAA 2 cut(s) 30, 321
AlwI GGATC 1 cut(s) 308
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 1 cut(s) 25
AsiGI ACCGGT 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 301
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 350
BccI CCATC 2 cut(s) 146, 224
BclI TGATCA 1 cut(s) 6
BcnI CCSGG 1 cut(s) 212
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 26
Bpu14I TTCGAA 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 212
BsaWI WCCGGW 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse118I RCCGGY 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 180
BseGI GGATG 3 cut(s) 52, 136, 235
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 350
BshFI GGCC 1 cut(s) 303
BshTI ACCGGT 1 cut(s) 288
BsiSI CCGG 3 cut(s) 211, 289, 304
BslI CCNNNNNNNGG 1 cut(s) 185
BsnI GGCC 1 cut(s) 303
Bsp119I TTCGAA 1 cut(s) 17
Bsp143I GATC 2 cut(s) 6, 313
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 1 cut(s) 308
BspT104I TTCGAA 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 288
BssAI RCCGGY 1 cut(s) 288
BssMI GATC 2 cut(s) 6, 313
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 216
BstBI TTCGAA 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 3 cut(s) 52, 136, 235
BstKTI GATC 2 cut(s) 9, 316
BstMBI GATC 2 cut(s) 6, 313
BstSCI CCNGG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 350
BstV2I GAAGAC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 3 cut(s) 52, 136, 235
BtsIMutI CAGTG 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 336
Cfr10I RCCGGY 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 189
CspAI ACCGGT 1 cut(s) 288
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviJI RGCY 2 cut(s) 303, 334
CviKI_1 RGCY 2 cut(s) 303, 334
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 1 cut(s) 162
DpnI GATC 2 cut(s) 8, 315
DpnII GATC 2 cut(s) 6, 313
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
EcoRI GAATTC 1 cut(s) 25
FaiI YATR 1 cut(s) 241
FbaI TGATCA 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 3 cut(s) 59, 143, 242
Fsp4HI GCNGC 1 cut(s) 339
GluI GCNGC 1 cut(s) 339
HaeIII GGCC 1 cut(s) 303
HapII CCGG 3 cut(s) 211, 289, 304
HpaII CCGG 3 cut(s) 211, 289, 304
HphI GGTGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 206
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 338
HpyF3I CTNAG 1 cut(s) 162
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 2 cut(s) 6, 313
LpnPI CCDG 5 cut(s) 171, 224, 302, 315, 317
Lsp1109I GCAGC 1 cut(s) 350
MalI GATC 2 cut(s) 8, 315
MboI GATC 2 cut(s) 6, 313
MboII GAAGA 2 cut(s) 31, 233
MfeI CAATTG 1 cut(s) 61
MluCI AATT 5 cut(s) 25, 61, 135, 344, 357
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 3 cut(s) 103, 157, 166
MseI TTAA 1 cut(s) 279
MspI CCGG 3 cut(s) 211, 289, 304
MspR9I CCNGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 61
NciI CCSGG 1 cut(s) 212
NdeII GATC 2 cut(s) 6, 313
NlaIV GGNNCC 1 cut(s) 177
NspV TTCGAA 1 cut(s) 17
PinAI ACCGGT 1 cut(s) 288
PkrI GCNGC 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 301
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 2 cut(s) 6, 313
Sau96I GGNCC 1 cut(s) 301
ScrFI CCNGG 1 cut(s) 212
SetI ASST 2 cut(s) 168, 177
SfuI TTCGAA 1 cut(s) 17
Sse9I AATT 5 cut(s) 25, 61, 135, 344, 357
StyD4I CCNGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 17
TasI AATT 5 cut(s) 25, 61, 135, 344, 357
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 1 cut(s) 94
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 2 cut(s) 87, 147
TspRI CASTG 1 cut(s) 94
XapI RAATTY 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.