Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005277.1

Orthogroup ID

OG0002210

Physical Location & Seq

Genomic Coordinates Forward (+)

50809 .. 51967

Gene Structure 1159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005277.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgtctggtggactagaaaatgagacgttggaagttaatgtgggagtaaagaccggtgaagatgtcttgatgcctgaatatgtttccccagcagaggtttctatgaaatctgaaaatgggcacaatttgattgacatggctattgatttggaaccgtatgctgcacaggatgagaatgtttcagatgatagtaatgtttatggtcccttacaaccagaatttcaagcttttgatctagtatggggcaaaattaggagccatccatggtggcctaggcagatatgtgatccttcagcttcatcaaaacttgcaaagaagtattttaagaagcacagttatctgcttttggtgttagtgacagtagcttttgtggtcgccggagttagtgggaagttggccggagactcgccagaagtctgccggagacccgtcggagttggccggaagttggctggaggtcctcgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

155

Amino Acids

16.9

Weight (kDa)

5.37

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27860 AT3G27860 AT5G40340 AT5G40340
fragaria_vesca	FvH4_6g50890 FvH4_6g50890
malus_domestica	MD09G1031100.v1.1
prunus_persica	Prupe.3G286500_v2.0.a1
pyrus_communis	pycom111g02480 pycom17g03040
rosa_chinensis	RchiOBHm_Chr2g0172271
rosa_laevigata	RLG00000006622 RLG00000018603 RLG00000022100 RLG00000024336 RLG00000028434 RLG00000037070
rosa_multiflora	Rmu_sc0005277.1_g000016 Rmu_sc0017785.1_g000001 Rmu_sc0017786.1_g000001 Rmu_ssc0000103.1_g000005
rosa_roxburghii	Rroxscaffold_4G00328330 Rroxscaffold_5G00367520
rosa_rugosa	Rorug02G0558300
rosa_samantha	Rh2AG320200 Rh2AG320300 Rh2AG475500 Rh2AG535600 Rh2AG535700 Rh2AG633300 Rh2BG646900 Rh2CG519400 Rh2CG613900 Rh2DG573700 Rh2DG573800 Rh2DG661800 Rh4BG393600 Rh4CG408400 Rh5AG278200 Rh5BG282800 Rh6AG204800 Rh6AG204900
rosa_wichuraiana	Rw2G052440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	2 cut(s)	396, 439
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	276
AfiI	CCNNNNNNNGG	2 cut(s)	94, 448
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	224
AluBI	AGCT	3 cut(s)	227, 296, 365
AluI	AGCT	3 cut(s)	227, 296, 365
Alw26I	GTCTC	3 cut(s)	17, 396, 418
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	3 cut(s)	269, 396, 439
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	218
AsiGI	ACCGGT	1 cut(s)	53
AspA2I	CCTAGG	1 cut(s)	272
AspS9I	GGNCC	2 cut(s)	203, 458
AsuHPI	GGTGA	1 cut(s)	68
AvaII	GGWCC	2 cut(s)	203, 458
AvrII	CCTAGG	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	267
BcoDI	GTCTC	3 cut(s)	17, 396, 418
BfaI	CTAG	4 cut(s)	14, 236, 273, 466
BisI	GCNGC	1 cut(s)	162
BlnI	CCTAGG	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	163
Bme18I	GGWCC	2 cut(s)	203, 458
BmgT120I	GGNCC	2 cut(s)	203, 458
BmiI	GGNNCC	3 cut(s)	153, 205, 257
BmsI	GCATC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	418
BsaJI	CCNNGG	2 cut(s)	263, 272
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 448
Bse118I	RCCGGY	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	263, 272
BseGI	GGATG	2 cut(s)	175, 259
BseLI	CCNNNNNNNGG	2 cut(s)	94, 448
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	148
BseYI	CCCAGC	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	271, 398, 441
BshTI	ACCGGT	1 cut(s)	53
BsiSI	CCGG	5 cut(s)	54, 378, 399, 421, 442
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	2 cut(s)	94, 448
BsmAI	GTCTC	3 cut(s)	17, 396, 418
BsmBI	CGTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	3 cut(s)	271, 398, 441
Bso31I	GGTCTC	1 cut(s)	418
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	232, 286
Bsp19I	CCATGG	1 cut(s)	263
BspANI	GGCC	3 cut(s)	271, 398, 441
BspLI	GGNNCC	3 cut(s)	153, 205, 257
BspPI	GGATC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	418
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	263, 272
BssMI	GATC	2 cut(s)	232, 286
BssT1I	CCWWGG	2 cut(s)	263, 272
Bst4CI	ACNGT	3 cut(s)	156, 335, 361
BstDSI	CCRYGG	1 cut(s)	263
BstF5I	GGATG	2 cut(s)	175, 259
BstKTI	GATC	2 cut(s)	235, 289
BstMAI	GTCTC	3 cut(s)	17, 396, 418
BstMBI	GATC	2 cut(s)	232, 286
BstSLI	GKGCMC	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	148
BsuRI	GGCC	3 cut(s)	271, 398, 441
BtgI	CCRYGG	1 cut(s)	263
BtsCI	GGATG	2 cut(s)	175, 259
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	203, 458
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	2 cut(s)	136, 264
CviJI	RGCY	9 cut(s)	140, 227, 258, 271, 296, 365, 398, 441, 452
CviKI_1	RGCY	9 cut(s)	140, 227, 258, 271, 296, 365, 398, 441, 452
DpnI	GATC	2 cut(s)	234, 288
DpnII	GATC	2 cut(s)	232, 286
EaeI	YGGCCR	2 cut(s)	396, 439
Eco130I	CCWWGG	2 cut(s)	263, 272
Eco31I	GGTCTC	1 cut(s)	418
Eco47I	GGWCC	2 cut(s)	203, 458
Eco57I	CTGAAG	1 cut(s)	276
EcoO109I	RGGNCCY	1 cut(s)	458
EcoT14I	CCWWGG	2 cut(s)	263, 272
ErhI	CCWWGG	2 cut(s)	263, 272
Esp3I	CGTCTC	1 cut(s)	17
FaeI	CATG	2 cut(s)	139, 267
FaiI	YATR	8 cut(s)	81, 104, 137, 159, 201, 241, 265, 283
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	2 cut(s)	135, 263
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	2 cut(s)	182, 246
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	4 cut(s)	14, 236, 273, 466
GluI	GCNGC	1 cut(s)	162
GsaI	CCCAGC	1 cut(s)	92
HaeIII	GGCC	3 cut(s)	271, 398, 441
HapII	CCGG	5 cut(s)	54, 378, 399, 421, 442
Hin1II	CATG	2 cut(s)	139, 267
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	1 cut(s)	404
HpaII	CCGG	5 cut(s)	54, 378, 399, 421, 442
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	3 cut(s)	112, 184, 434
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	1 cut(s)	11
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	1 cut(s)	300
HpyCH4III	ACNGT	3 cut(s)	156, 335, 361
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	164, 311
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	139, 267
Kzo9I	GATC	2 cut(s)	232, 286
LmnI	GCTCC	1 cut(s)	255
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	4 cut(s)	14, 236, 273, 466
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	2 cut(s)	234, 288
MboI	GATC	2 cut(s)	232, 286
MboII	GAAGA	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	3 cut(s)	124, 218, 249
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	2 cut(s)	9, 412
MnlI	CCTC	2 cut(s)	88, 449
MseI	TTAA	2 cut(s)	36, 324
MspI	CCGG	5 cut(s)	54, 378, 399, 421, 442
NcoI	CCATGG	1 cut(s)	263
NdeII	GATC	2 cut(s)	232, 286
NlaIII	CATG	2 cut(s)	139, 267
NlaIV	GGNNCC	3 cut(s)	153, 205, 257
NmuCI	GTSAC	1 cut(s)	355
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PpuMI	RGGWCCY	1 cut(s)	458
Psp5II	RGGWCCY	1 cut(s)	458
PspFI	CCCAGC	1 cut(s)	88
PspN4I	GGNNCC	3 cut(s)	153, 205, 257
PspPI	GGNCC	2 cut(s)	203, 458
PspPPI	RGGWCCY	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	36, 324
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	2 cut(s)	232, 286
Sau96I	GGNCC	2 cut(s)	203, 458
SchI	GAGTC	1 cut(s)	398
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	6 cut(s)	29, 99, 229, 298, 367, 460
SfaNI	GCATC	1 cut(s)	60
SinI	GGWCC	2 cut(s)	203, 458
Sse9I	AATT	3 cut(s)	124, 218, 249
SspMI	CTAG	4 cut(s)	14, 236, 273, 466
StyI	CCWWGG	2 cut(s)	263, 272
TaaI	ACNGT	3 cut(s)	156, 335, 361
TaiI	ACGT	1 cut(s)	29
TasI	AATT	3 cut(s)	124, 218, 249
Tru1I	TTAA	2 cut(s)	36, 324
Tru9I	TTAA	2 cut(s)	36, 324
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	119, 288
VpaK11BI	GGWCC	2 cut(s)	203, 458
XapI	RAATTY	1 cut(s)	218
XmaJI	CCTAGG	1 cut(s)	272
XspI	CTAG	4 cut(s)	14, 236, 273, 466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.