Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002827

Physical Location & Seq

Genomic Coordinates Reverse (-)

26265147 .. 26266689

Gene Structure 1543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G294400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGAGCTCTGGAAACTACTGGTGGCATCTGGGTTCTTCTTGGCTTCATGGGTTTTGGGTGCGGGAGGTGAGAATCTACCAGCTTGTTCTTTTCCTGCAATTTACAACTTTGGAGACTCAAATTCAGACACAGGTGGCATATCAGCTGCATTTGAACCAATCCGAGCTCCTTACGGCGAAGCATTCTTTCACAAGCCAGCTGGGAGAGACTCTGATGGCCGTCTCATCATAGACTTCATAGCTGAGCGCCTAAGATTGCCATACTTGAGTGCATACTTGAACTCACTTGGAACTAATTACCGGCATGGTGCAAATTTTGCCACTGGAGGATCAACCATTAGGAGGCCAAATGAAACCATTTACGAGTACGGCATTAGCCCTTTCTCGCTTGATATGCAGACAACCCAATTCCTTCAGTTCAAAGCACGCAGCGCCGAACTTTATCGCCAAGCCAAGGATCCCTCTGATAGAAGCACACTGCCCAATCCTCAGGACTTCGCAAAGGCTTTGTACACTTTTGATATTGGGCAAAATGATCTGTCTGTCGGTTTTCGGAAGCTGAGTTTTGATCAAATTCGTGCGGCATTGCCAGACATCCTCAGCCAGTTAGCCACAGCTGTTCGACGTATATATGAACAAGGGGGCAGGTCATTTTGGATACACAACACAGGTCCCATCGGTTGCTTGCCAGTAAATCTATTCTACAATCTGAATCCGCCACCAGGCTATCTTGACGACCATGGCTGTGTCAAGGGCCAGAATGACATGGCCATAGAGTTCAACAGGCAACTCAAGGACAGAGTGATCAAACTAAGAGCTGAGCTCCCACAAGCTGCAATCACATATGTGGATGTCTATGCTGCCAAGTATGGACTGATTAGCAATGCAAAAACTGAAGCAGGATTTGCTGATCCAATGAAGGTTTGTTGTGGGTACCATGTGAAGTACGACCATGTCTGGTGTGGGAACAAAGGAATGGTTAATGGAAGTGAAGTATACGGTCCTTCTTGTCAAACTCCTTCGTCTTACATCAGCTGGGATGGAGTTCACTATACTCAGGGTGCCAACCAGTGGGTTGCTAATCATATACTTGACGGCTCGTTGTCATCGACCCCGCCAACTCCAATCACTCAAGCTTGTCAACGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

384

Amino Acids

42.31

Weight (kDa)

6.7

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14450
fragaria_vesca	FvH4_6g51890 FvH4_6g51890 FvH4_6g51900 FvH4_6g51910 FvH4_6g51910 FvH4_6g51910
malus_domestica	MD09G1021800.v1.1 MD09G1021900.v1.1 MD09G1022200.v1.1 MD17G1021700.v1.1
prunus_persica	Prupe.3G294400_v2.0.a1 Prupe.3G294400_v2.0.a1 Prupe.3G294500_v2.0.a1 Prupe.3G294500_v2.0.a1
pyrus_communis	pycom111g01820 pycom111g01830 pycom111g01860 pycom17g01880
rosa_chinensis	RchiOBHm_Chr2g0173381 RchiOBHm_Chr2g0173391
rosa_laevigata	RLG00000022184 RLG00000022185
rosa_multiflora	Rmu_co8202706.1_g000001 Rmu_co8257229.1_g000001 Rmu_ssc0000282.1_g000010 Rmu_ssc0000282.1_g000011
rosa_roxburghii	Rroxscaffold_2G00078930 Rroxscaffold_2G00078940
rosa_rugosa	Rorug02G0567700 Rorug02G0567800
rosa_samantha	Rh2AG648300 Rh2AG648400 Rh2BG658900 Rh2BG659000 Rh2CG624200 Rh2CG624300
rosa_wichuraiana	Rw2G053210 Rw2G053220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	636
Acc65I	GGTACC	1 cut(s)	933
AccB1I	GGYRCC	2 cut(s)	933, 1061
AccB7I	CCANNNNNTGG	1 cut(s)	1071
AccI	GTMKAC	1 cut(s)	996
AciI	CCGC	4 cut(s)	62, 581, 716, 1115
AclWI	GGATC	4 cut(s)	337, 452, 465, 905
AcoI	YGGCCR	2 cut(s)	217, 768
AcsI	RAATTY	3 cut(s)	121, 313, 573
AcuI	CTGAAG	2 cut(s)	398, 915
AfaI	GTAC	4 cut(s)	368, 512, 935, 947
AfiI	CCNNNNNNNGG	4 cut(s)	342, 454, 722, 1071
AgsI	TTSAA	4 cut(s)	155, 280, 421, 781
AjnI	CCWGG	1 cut(s)	721
AleI	CACNNNNGTG	1 cut(s)	845
Alw21I	GWGCWC	3 cut(s)	9, 169, 825
Alw26I	GTCTC	3 cut(s)	108, 201, 227
AlwI	GGATC	4 cut(s)	337, 452, 465, 905
AoxI	GGCC	4 cut(s)	217, 344, 754, 768
ApeKI	GCWGC	4 cut(s)	146, 429, 833, 860
ApoI	RAATTY	3 cut(s)	121, 313, 573
Asp718I	GGTACC	1 cut(s)	933
AspLEI	GCGC	2 cut(s)	249, 434
AspS9I	GGNCC	3 cut(s)	671, 754, 1001
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	2 cut(s)	671, 1001
AxyI	CCTNAGG	1 cut(s)	489
BalI	TGGCCA	1 cut(s)	770
BamHI	GGATCC	1 cut(s)	457
BanI	GGYRCC	2 cut(s)	933, 1061
BanII	GRGCYC	3 cut(s)	9, 169, 825
Bbv12I	GWGCWC	3 cut(s)	9, 169, 825
BbvCI	CCTCAGC	1 cut(s)	599
BbvI	GCAGC	4 cut(s)	133, 441, 820, 847
BccI	CCATC	3 cut(s)	209, 683, 1034
BceAI	ACGGC	4 cut(s)	190, 204, 385, 1111
BciT130I	CCWGG	1 cut(s)	723
BciVI	GTATCC	1 cut(s)	651
BclI	TGATCA	2 cut(s)	568, 804
BcoDI	GTCTC	3 cut(s)	108, 201, 227
BfoI	RGCGCY	2 cut(s)	250, 435
BfuAI	ACCTGC	1 cut(s)	636
BfuI	GTATCC	1 cut(s)	651
BisI	GCNGC	5 cut(s)	147, 430, 582, 834, 861
BlpI	GCTNAGC	2 cut(s)	243, 819
BlsI	GCNGC	5 cut(s)	148, 431, 583, 835, 862
Bme1390I	CCNGG	1 cut(s)	723
Bme18I	GGWCC	2 cut(s)	671, 1001
BmgT120I	GGNCC	3 cut(s)	671, 754, 1001
BmiI	GGNNCC	4 cut(s)	459, 673, 935, 1063
BmrFI	CCNGG	1 cut(s)	723
BmsI	GCATC	1 cut(s)	35
BplI	GAGNNNNNCTC	2 cut(s)	807, 839
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	599
Bpu1102I	GCTNAGC	2 cut(s)	243, 819
BpuEI	CTTGAG	3 cut(s)	286, 776, 1116
BsaJI	CCNNGG	2 cut(s)	453, 739
Bsc4I	CCNNNNNNNGG	4 cut(s)	342, 454, 722, 1071
Bse118I	RCCGGY	1 cut(s)	300
Bse1I	ACTGG	5 cut(s)	24, 328, 604, 689, 1069
Bse21I	CCTNAGG	1 cut(s)	489
Bse3DI	GCAATG	2 cut(s)	584, 889
BseBI	CCWGG	1 cut(s)	723
BseDI	CCNNGG	2 cut(s)	453, 739
BseGI	GGATG	3 cut(s)	594, 856, 1045
BseLI	CCNNNNNNNGG	4 cut(s)	342, 454, 722, 1071
BseMI	GCAATG	2 cut(s)	584, 889
BseMII	CTCAG	6 cut(s)	234, 503, 551, 613, 810, 1070
BseNI	ACTGG	5 cut(s)	24, 328, 604, 689, 1069
BseXI	GCAGC	4 cut(s)	133, 441, 820, 847
BseYI	CCCAGC	2 cut(s)	200, 1035
BshFI	GGCC	4 cut(s)	219, 346, 756, 770
BshNI	GGYRCC	2 cut(s)	933, 1061
BsiHKAI	GWGCWC	3 cut(s)	9, 169, 825
BsiSI	CCGG	1 cut(s)	301
BslFI	GGGAC	1 cut(s)	657
BslI	CCNNNNNNNGG	4 cut(s)	342, 454, 722, 1071
BsmAI	GTCTC	3 cut(s)	108, 201, 227
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	657
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	4 cut(s)	219, 346, 756, 770
Bsp1286I	GDGCHC	3 cut(s)	9, 169, 825
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	6 cut(s)	329, 457, 535, 568, 804, 910
Bsp1720I	GCTNAGC	2 cut(s)	243, 819
Bsp19I	CCATGG	1 cut(s)	739
BspACI	CCGC	4 cut(s)	62, 581, 716, 1115
BspANI	GGCC	4 cut(s)	219, 346, 756, 770
BspCNI	CTCAG	6 cut(s)	235, 502, 552, 612, 811, 1069
BspLI	GGNNCC	4 cut(s)	459, 673, 935, 1063
BspMI	ACCTGC	1 cut(s)	636
BspPI	GGATC	4 cut(s)	337, 452, 465, 905
BspT107I	GGYRCC	2 cut(s)	933, 1061
BsrDI	GCAATG	2 cut(s)	584, 889
BsrFI	RCCGGY	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	5 cut(s)	24, 328, 604, 689, 1069
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	2 cut(s)	453, 739
BssMI	GATC	6 cut(s)	329, 457, 535, 568, 804, 910
BssNAI	GTATAC	1 cut(s)	997
BssT1I	CCWWGG	2 cut(s)	453, 739
Bst1107I	GTATAC	1 cut(s)	997
Bst2UI	CCWGG	1 cut(s)	723
Bst4CI	ACNGT	1 cut(s)	1001
BstAPI	GCANNNNNTGC	2 cut(s)	317, 905
BstAUI	TGTACA	1 cut(s)	510
BstC8I	GCNNGC	3 cut(s)	198, 427, 686
BstDEI	CTNAG	8 cut(s)	243, 251, 489, 560, 599, 812, 819, 1056
BstDSI	CCRYGG	1 cut(s)	739
BstF5I	GGATG	3 cut(s)	594, 856, 1045
BstH2I	RGCGCY	2 cut(s)	250, 435
BstHHI	GCGC	2 cut(s)	249, 434
BstKTI	GATC	6 cut(s)	332, 460, 538, 571, 807, 913
BstMAI	GTCTC	3 cut(s)	108, 201, 227
BstMBI	GATC	6 cut(s)	329, 457, 535, 568, 804, 910
BstMWI	GCNNNNNNNGC	4 cut(s)	317, 394, 431, 905
BstNI	CCWGG	1 cut(s)	723
BstSCI	CCNGG	1 cut(s)	721
BstV1I	GCAGC	4 cut(s)	133, 441, 820, 847
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BstZ17I	GTATAC	1 cut(s)	997
Bsu36I	CCTNAGG	1 cut(s)	489
BsuI	GTATCC	1 cut(s)	651
BsuRI	GGCC	4 cut(s)	219, 346, 756, 770
BtgI	CCRYGG	1 cut(s)	739
BtsCI	GGATG	3 cut(s)	594, 856, 1045
BtsI	GCAGTG	1 cut(s)	476
BtsIMutI	CAGTG	3 cut(s)	321, 476, 1076
BveI	ACCTGC	1 cut(s)	636
Cac8I	GCNNGC	3 cut(s)	198, 427, 686
CfoI	GCGC	2 cut(s)	249, 434
Cfr10I	RCCGGY	1 cut(s)	300
Cfr13I	GGNCC	3 cut(s)	671, 754, 1001
Csp6I	GTAC	4 cut(s)	367, 511, 934, 946
CviAII	CATG	6 cut(s)	48, 305, 740, 766, 938, 953
CviQI	GTAC	4 cut(s)	367, 511, 934, 946
DdeI	CTNAG	8 cut(s)	243, 251, 489, 560, 599, 812, 819, 1056
DpnI	GATC	6 cut(s)	331, 459, 537, 570, 806, 912
DpnII	GATC	6 cut(s)	329, 457, 535, 568, 804, 910
EaeI	YGGCCR	2 cut(s)	217, 768
EciI	GGCGGA	1 cut(s)	705
Ecl136II	GAGCTC	3 cut(s)	7, 167, 823
Eco130I	CCWWGG	2 cut(s)	453, 739
Eco24I	GRGCYC	3 cut(s)	9, 169, 825
Eco47I	GGWCC	2 cut(s)	671, 1001
Eco53kI	GAGCTC	3 cut(s)	7, 167, 823
Eco57I	CTGAAG	2 cut(s)	398, 915
Eco81I	CCTNAGG	1 cut(s)	489
EcoICRI	GAGCTC	3 cut(s)	7, 167, 823
EcoO109I	RGGNCCY	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	721
EcoT14I	CCWWGG	2 cut(s)	453, 739
EcoT38I	GRGCYC	3 cut(s)	9, 169, 825
ErhI	CCWWGG	2 cut(s)	453, 739
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	6 cut(s)	51, 308, 743, 769, 941, 956
FaqI	GGGAC	1 cut(s)	657
FatI	CATG	6 cut(s)	47, 304, 739, 765, 937, 952
FauI	CCCGC	2 cut(s)	55, 1122
FauNDI	CATATG	1 cut(s)	844
FbaI	TGATCA	2 cut(s)	568, 804
FblI	GTMKAC	1 cut(s)	996
Fnu4HI	GCNGC	5 cut(s)	147, 430, 582, 834, 861
FokI	GGATG	3 cut(s)	581, 863, 1052
FriOI	GRGCYC	3 cut(s)	9, 169, 825
Fsp4HI	GCNGC	5 cut(s)	147, 430, 582, 834, 861
GlaI	GCGC	2 cut(s)	248, 433
GluI	GCNGC	5 cut(s)	147, 430, 582, 834, 861
GsaI	CCCAGC	2 cut(s)	204, 1039
GsuI	CTGGAG	1 cut(s)	345
HaeII	RGCGCY	2 cut(s)	250, 435
HaeIII	GGCC	4 cut(s)	219, 346, 756, 770
HapII	CCGG	1 cut(s)	301
HhaI	GCGC	2 cut(s)	249, 434
Hin1II	CATG	6 cut(s)	51, 308, 743, 769, 941, 956
Hin6I	GCGC	2 cut(s)	247, 432
HinP1I	GCGC	2 cut(s)	247, 432
HincII	GTYRAC	1 cut(s)	1142
HindII	GTYRAC	1 cut(s)	1142
HindIII	AAGCTT	1 cut(s)	1134
HinfI	GANTC	4 cut(s)	73, 116, 209, 712
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	4 cut(s)	513, 997, 1048, 1142
Hpy188I	TCNGA	6 cut(s)	127, 164, 214, 466, 555, 711
Hpy188III	TCNNGA	3 cut(s)	10, 491, 731
Hpy8I	GTNNAC	4 cut(s)	513, 997, 1048, 1142
Hpy99I	CGWCG	1 cut(s)	627
HpyAV	CCTTC	4 cut(s)	422, 913, 1014, 1029
HpyCH4III	ACNGT	1 cut(s)	1001
HpyCH4IV	ACGT	1 cut(s)	625
HpyCH4V	TGCA	7 cut(s)	98, 149, 272, 311, 397, 836, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	317, 394, 431, 905
HpyF3I	CTNAG	8 cut(s)	243, 251, 489, 560, 599, 812, 819, 1056
HpySE526I	ACGT	1 cut(s)	625
Hsp92II	CATG	6 cut(s)	51, 308, 743, 769, 941, 956
HspAI	GCGC	2 cut(s)	247, 432
KpnI	GGTACC	1 cut(s)	937
Ksp22I	TGATCA	2 cut(s)	568, 804
Kzo9I	GATC	6 cut(s)	329, 457, 535, 568, 804, 910
LmnI	GCTCC	3 cut(s)	4, 172, 828
Lsp1109I	GCAGC	4 cut(s)	133, 441, 820, 847
LweI	GCATC	1 cut(s)	35
MaeII	ACGT	1 cut(s)	625
MalI	GATC	6 cut(s)	331, 459, 537, 570, 806, 912
MboI	GATC	6 cut(s)	329, 457, 535, 568, 804, 910
MboII	GAAGA	1 cut(s)	28
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	3 cut(s)	9, 169, 825
MlsI	TGGCCA	1 cut(s)	770
MluCI	AATT	6 cut(s)	99, 121, 295, 313, 407, 573
MluNI	TGGCCA	1 cut(s)	770
MlyI	GAGTC	2 cut(s)	110, 203
MnlI	CCTC	6 cut(s)	59, 320, 336, 472, 498, 608
Mox20I	TGGCCA	1 cut(s)	770
MscI	TGGCCA	1 cut(s)	770
MseI	TTAA	2 cut(s)	981, 1150
MslI	CAYNNNNRTG	2 cut(s)	744, 845
Msp20I	TGGCCA	1 cut(s)	770
MspA1I	CMGCKG	4 cut(s)	146, 200, 617, 1035
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	1 cut(s)	723
Mva1269I	GAATGC	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	723
MwoI	GCNNNNNNNGC	4 cut(s)	317, 394, 431, 905
NcoI	CCATGG	1 cut(s)	739
NdeI	CATATG	1 cut(s)	844
NdeII	GATC	6 cut(s)	329, 457, 535, 568, 804, 910
NlaIII	CATG	6 cut(s)	51, 308, 743, 769, 941, 956
NlaIV	GGNNCC	4 cut(s)	459, 673, 935, 1063
OliI	CACNNNNGTG	1 cut(s)	845
PcsI	WCGNNNNNNNCGW	1 cut(s)	1106
PctI	GAATGC	1 cut(s)	182
PfeI	GAWTC	2 cut(s)	73, 712
PflFI	GACNNNGTC	1 cut(s)	953
PflMI	CCANNNNNTGG	1 cut(s)	1071
PkrI	GCNGC	5 cut(s)	148, 431, 583, 835, 862
PleI	GAGTC	2 cut(s)	110, 203
PpsI	GAGTC	2 cut(s)	110, 203
PpuMI	RGGWCCY	1 cut(s)	671
Psp124BI	GAGCTC	3 cut(s)	9, 169, 825
Psp5II	RGGWCCY	1 cut(s)	671
Psp6I	CCWGG	1 cut(s)	721
PspFI	CCCAGC	2 cut(s)	200, 1035
PspGI	CCWGG	1 cut(s)	721
PspN4I	GGNNCC	4 cut(s)	459, 673, 935, 1063
PspPI	GGNCC	3 cut(s)	671, 754, 1001
PspPPI	RGGWCCY	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	457
PsyI	GACNNNGTC	1 cut(s)	953
PvuII	CAGCTG	4 cut(s)	146, 200, 617, 1035
RsaI	GTAC	4 cut(s)	368, 512, 935, 947
RsaNI	GTAC	4 cut(s)	367, 511, 934, 946
RseI	CAYNNNNRTG	2 cut(s)	744, 845
SacI	GAGCTC	3 cut(s)	9, 169, 825
SaqAI	TTAA	2 cut(s)	981, 1150
SatI	GCNGC	5 cut(s)	147, 430, 582, 834, 861
Sau3AI	GATC	6 cut(s)	329, 457, 535, 568, 804, 910
Sau96I	GGNCC	3 cut(s)	671, 754, 1001
SchI	GAGTC	2 cut(s)	110, 203
ScrFI	CCNGG	1 cut(s)	723
SduI	GDGCHC	3 cut(s)	9, 169, 825
SfaNI	GCATC	1 cut(s)	35
SinI	GGWCC	2 cut(s)	671, 1001
SmiMI	CAYNNNNRTG	2 cut(s)	744, 845
SmlI	CTYRAG	3 cut(s)	265, 791, 1131
SmoI	CTYRAG	3 cut(s)	265, 791, 1131
Sse9I	AATT	6 cut(s)	99, 121, 295, 313, 407, 573
SsiI	CCGC	4 cut(s)	62, 581, 716, 1115
SstI	GAGCTC	3 cut(s)	9, 169, 825
StyD4I	CCNGG	1 cut(s)	721
StyI	CCWWGG	2 cut(s)	453, 739
TaaI	ACNGT	1 cut(s)	1001
TaiI	ACGT	1 cut(s)	628
TaqI	TCGA	2 cut(s)	622, 1109
TasI	AATT	6 cut(s)	99, 121, 295, 313, 407, 573
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	2 cut(s)	73, 712
Tru1I	TTAA	2 cut(s)	981, 1150
Tru9I	TTAA	2 cut(s)	981, 1150
TscAI	CASTG	3 cut(s)	328, 483, 1076
TseI	GCWGC	4 cut(s)	146, 429, 833, 860
TspDTI	ATGAA	5 cut(s)	36, 226, 366, 648, 932
TspRI	CASTG	3 cut(s)	328, 483, 1076
Tth111I	GACNNNGTC	1 cut(s)	953
Van91I	CCANNNNNTGG	1 cut(s)	1071
VpaK11BI	GGWCC	2 cut(s)	671, 1001
XapI	RAATTY	3 cut(s)	121, 313, 573
XcmI	CCANNNNNNNNNTGG	1 cut(s)	959
XmiI	GTMKAC	1 cut(s)	996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.