Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0002827

Physical Location & Seq

Genomic Coordinates Forward (+)

1116076 .. 1116868

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCTGAAAATGGTGTCAGCCCTTTTTATCTTGACATCCAGATTGCTCAGTATACCCAGTTCAAGTCACGTACTACCAGTCTTTCCAGCCAAGGTGACTCATCCGAGATACAATCCGACAGATTCCCAATAGTCGATGACTTTGCAAAGGCGCTCTACACTTTCGATATAGGACAAAATGATCTAGCTACCGGTTTTAGGAAAAAATTCAGCAGTGAACAATTTGAAGCAGAAATCACAGACATGATTAACCAGCAAGCTAAAGCCGTACGAAATTTGTATGAACAAGGGGCAAGGACATTCTGGATACACAACACGGGTCCGATTGGTTGCTTGGCAGTGACGTTACACAACATCCATAGTCCGAGCCCCGGCTTGGTTGACGGCCAGGGTTGCGACAAGTTTCAAAATGACATGGCCAGACAGTTCAATAGGCAGCTGGAGCAGAAAGTGATCCAGCTAAGGAAGGAGCTCCCCCTTTCTGCCATAACGTATGTCGATGTCTTCGCTGCAAAGTACGAACTAATCGGCAACGCGACGAAGCGCGGTAAAATCCTGATTCAACACTCTCACGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

193

Amino Acids

21.68

Weight (kDa)

6.21

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14450
fragaria_vesca	FvH4_6g51890 FvH4_6g51890 FvH4_6g51900 FvH4_6g51910 FvH4_6g51910 FvH4_6g51910
malus_domestica	MD09G1021800.v1.1 MD09G1021900.v1.1 MD09G1022200.v1.1 MD17G1021700.v1.1
prunus_persica	Prupe.3G294400_v2.0.a1 Prupe.3G294400_v2.0.a1 Prupe.3G294500_v2.0.a1 Prupe.3G294500_v2.0.a1
pyrus_communis	pycom111g01820 pycom111g01830 pycom111g01860 pycom17g01880
rosa_chinensis	RchiOBHm_Chr2g0173381 RchiOBHm_Chr2g0173391
rosa_laevigata	RLG00000022184 RLG00000022185
rosa_multiflora	Rmu_co8202706.1_g000001 Rmu_co8257229.1_g000001 Rmu_ssc0000282.1_g000010 Rmu_ssc0000282.1_g000011
rosa_roxburghii	Rroxscaffold_2G00078930 Rroxscaffold_2G00078940
rosa_rugosa	Rorug02G0567700 Rorug02G0567800
rosa_samantha	Rh2AG648300 Rh2AG648400 Rh2BG658900 Rh2BG659000 Rh2CG624200 Rh2CG624300
rosa_wichuraiana	Rw2G053210 Rw2G053220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	53
AccII	CGCG	2 cut(s)	536, 546
AciI	CCGC	1 cut(s)	546
AclWI	GGATC	1 cut(s)	448
AcoI	YGGCCR	2 cut(s)	385, 417
AcsI	RAATTY	2 cut(s)	206, 274
AfaI	GTAC	3 cut(s)	73, 270, 518
AfiI	CCNNNNNNNGG	3 cut(s)	198, 371, 376
AgeI	ACCGGT	1 cut(s)	191
AgsI	TTSAA	5 cut(s)	64, 227, 407, 430, 563
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	5 cut(s)	188, 260, 439, 460, 472
AluI	AGCT	5 cut(s)	188, 260, 439, 460, 472
Alw21I	GWGCWC	1 cut(s)	474
AlwI	GGATC	1 cut(s)	448
AoxI	GGCC	2 cut(s)	385, 417
ApeKI	GCWGC	2 cut(s)	436, 509
ApoI	RAATTY	2 cut(s)	206, 274
AsiGI	ACCGGT	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	2 cut(s)	154, 546
AspS9I	GGNCC	1 cut(s)	320
AsuC2I	CCSGG	1 cut(s)	372
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	320
BalI	TGGCCA	1 cut(s)	419
BanII	GRGCYC	2 cut(s)	371, 474
BbsI	GAAGAC	1 cut(s)	496
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	2 cut(s)	448, 496
BceAI	ACGGC	2 cut(s)	251, 400
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	1 cut(s)	389
BciVI	GTATCC	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	372
BfaI	CTAG	1 cut(s)	185
BfoI	RGCGCY	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	300
BisI	GCNGC	2 cut(s)	437, 510
BlsI	GCNGC	2 cut(s)	438, 511
Bme1390I	CCNGG	2 cut(s)	372, 389
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	2 cut(s)	372, 389
BmrI	ACTGGG	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	496
BpmI	CTGGAG	1 cut(s)	461
Bpu10I	CCTNAGC	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	372
BsaAI	YACGTR	1 cut(s)	71
BsaJI	CCNNGG	3 cut(s)	91, 370, 388
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 371, 376
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	58, 78
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	3 cut(s)	91, 370, 388
BseGI	GGATG	3 cut(s)	36, 101, 354
BseLI	CCNNNNNNNGG	3 cut(s)	198, 371, 376
BseMII	CTCAG	1 cut(s)	62
BseNI	ACTGG	2 cut(s)	58, 78
BseXI	GCAGC	2 cut(s)	448, 496
Bsh1236I	CGCG	2 cut(s)	536, 546
BshFI	GGCC	2 cut(s)	387, 419
BshTI	ACCGGT	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	2 cut(s)	192, 372
BsiWI	CGTACG	1 cut(s)	268
BslI	CCNNNNNNNGG	3 cut(s)	198, 371, 376
BsnI	GGCC	2 cut(s)	387, 419
Bsp1286I	GDGCHC	2 cut(s)	371, 474
Bsp143I	GATC	2 cut(s)	181, 453
BspACI	CCGC	1 cut(s)	546
BspANI	GGCC	2 cut(s)	387, 419
BspCNI	CTCAG	1 cut(s)	61
BspFNI	CGCG	2 cut(s)	536, 546
BspLI	GGNNCC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	448
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	58, 78
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	3 cut(s)	91, 370, 388
BssMI	GATC	2 cut(s)	181, 453
BssNAI	GTATAC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	91
Bst1107I	GTATAC	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	1 cut(s)	426
BstBAI	YACGTR	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	2 cut(s)	48, 461
BstF5I	GGATG	3 cut(s)	36, 101, 354
BstFNI	CGCG	2 cut(s)	536, 546
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	2 cut(s)	154, 546
BstKTI	GATC	2 cut(s)	184, 456
BstMBI	GATC	2 cut(s)	181, 453
BstMWI	GCNNNNNNNGC	2 cut(s)	393, 442
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	2 cut(s)	370, 387
BstUI	CGCG	2 cut(s)	536, 546
BstV1I	GCAGC	2 cut(s)	448, 496
BstV2I	GAAGAC	1 cut(s)	496
BstZ17I	GTATAC	1 cut(s)	54
BsuI	GTATCC	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	387, 419
BtsCI	GGATG	3 cut(s)	36, 101, 354
BtsI	GCAGTG	2 cut(s)	220, 345
BtsIMutI	CAGTG	2 cut(s)	220, 345
Cac8I	GCNNGC	1 cut(s)	258
CfoI	GCGC	2 cut(s)	154, 546
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	320
Csp6I	GTAC	3 cut(s)	72, 269, 517
CspAI	ACCGGT	1 cut(s)	191
CviAII	CATG	2 cut(s)	244, 415
CviQI	GTAC	3 cut(s)	72, 269, 517
DdeI	CTNAG	2 cut(s)	48, 461
DpnI	GATC	2 cut(s)	183, 455
DpnII	GATC	2 cut(s)	181, 453
EaeI	YGGCCR	2 cut(s)	385, 417
Ecl136II	GAGCTC	1 cut(s)	472
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	2 cut(s)	371, 474
Eco47I	GGWCC	1 cut(s)	320
Eco53kI	GAGCTC	1 cut(s)	472
EcoICRI	GAGCTC	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	91
EcoT38I	GRGCYC	2 cut(s)	371, 474
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	2 cut(s)	247, 418
FaiI	YATR	8 cut(s)	54, 170, 245, 282, 360, 416, 488, 495
FatI	CATG	2 cut(s)	243, 414
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	2 cut(s)	437, 510
FokI	GGATG	3 cut(s)	23, 88, 341
FriOI	GRGCYC	2 cut(s)	371, 474
Fsp4HI	GCNGC	2 cut(s)	437, 510
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	2 cut(s)	153, 545
GluI	GCNGC	2 cut(s)	437, 510
GsuI	CTGGAG	1 cut(s)	461
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	387, 419
HapII	CCGG	2 cut(s)	192, 372
HhaI	GCGC	2 cut(s)	154, 546
Hin1II	CATG	2 cut(s)	247, 418
Hin6I	GCGC	2 cut(s)	152, 544
HinP1I	GCGC	2 cut(s)	152, 544
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	3 cut(s)	98, 123, 559
HpaII	CCGG	2 cut(s)	192, 372
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	3 cut(s)	54, 218, 382
Hpy188I	TCNGA	5 cut(s)	7, 106, 118, 324, 366
Hpy188III	TCNNGA	5 cut(s)	32, 40, 304, 556, 572
Hpy8I	GTNNAC	3 cut(s)	54, 218, 382
Hpy99I	CGWCG	1 cut(s)	541
HpyAV	CCTTC	1 cut(s)	460
HpyCH4III	ACNGT	1 cut(s)	426
HpyCH4IV	ACGT	3 cut(s)	70, 344, 491
HpyCH4V	TGCA	2 cut(s)	146, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	393, 442
HpyF3I	CTNAG	2 cut(s)	48, 461
HpySE526I	ACGT	3 cut(s)	70, 344, 491
Hsp92II	CATG	2 cut(s)	247, 418
HspAI	GCGC	2 cut(s)	152, 544
Kzo9I	GATC	2 cut(s)	181, 453
LmnI	GCTCC	3 cut(s)	442, 469, 477
Lsp1109I	GCAGC	2 cut(s)	448, 496
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	3 cut(s)	70, 344, 491
MaeIII	GTNAC	4 cut(s)	66, 95, 340, 345
MalI	GATC	2 cut(s)	183, 455
MboI	GATC	2 cut(s)	181, 453
MboII	GAAGA	1 cut(s)	496
MhlI	GDGCHC	2 cut(s)	371, 474
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	3 cut(s)	206, 221, 274
MluNI	TGGCCA	1 cut(s)	419
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	141
Mox20I	TGGCCA	1 cut(s)	419
MroXI	GAANNNNTTC	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	1 cut(s)	242
Msp20I	TGGCCA	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	439
MspI	CCGG	2 cut(s)	192, 372
MspR9I	CCNGG	2 cut(s)	372, 389
MvaI	CCWGG	1 cut(s)	389
MvnI	CGCG	2 cut(s)	536, 546
MwoI	GCNNNNNNNGC	2 cut(s)	393, 442
NciI	CCSGG	1 cut(s)	372
NdeII	GATC	2 cut(s)	181, 453
NlaIII	CATG	2 cut(s)	247, 418
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	3 cut(s)	66, 95, 340
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	123, 559
Pfl23II	CGTACG	1 cut(s)	268
PinAI	ACCGGT	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	438, 511
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	387
PspLI	CGTACG	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	320
PsrI	GAACNNNNNNTAC	2 cut(s)	44, 76
PvuII	CAGCTG	1 cut(s)	439
RsaI	GTAC	3 cut(s)	73, 270, 518
RsaNI	GTAC	3 cut(s)	72, 269, 517
RseI	CAYNNNNRTG	1 cut(s)	242
SacI	GAGCTC	1 cut(s)	474
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	2 cut(s)	437, 510
Sau3AI	GATC	2 cut(s)	181, 453
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	372, 389
SduI	GDGCHC	2 cut(s)	371, 474
SetI	ASST	9 cut(s)	73, 97, 190, 262, 347, 441, 462, 474, 494
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	206, 221, 274
SsiI	CCGC	1 cut(s)	546
SspMI	CTAG	1 cut(s)	185
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	2 cut(s)	370, 387
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	426
TaiI	ACGT	3 cut(s)	73, 347, 494
TaqI	TCGA	3 cut(s)	135, 165, 498
TasI	AATT	3 cut(s)	206, 221, 274
TfiI	GAWTC	2 cut(s)	123, 559
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	2 cut(s)	220, 345
TseFI	GTSAC	3 cut(s)	66, 95, 340
TseI	GCWGC	2 cut(s)	436, 509
Tsp45I	GTSAC	3 cut(s)	66, 95, 340
TspDTI	ATGAA	1 cut(s)	297
TspRI	CASTG	2 cut(s)	220, 345
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	2 cut(s)	206, 274
XmiI	GTMKAC	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.