Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8257229.1

Orthogroup ID

OG0002827

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 640

Gene Structure 640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8257229.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 343 bp

atgagtaccgagcaatttctagcagaaattccagacattgttaaccagttggccacagccatccgaagtttgtatgaccgaggggcaagggcattctggatacacaacactggtccaataggttgcttgggagtgacattacactacatccatgacccgagccctcccggataccttgatcgccacggttgcgtgaagtttcaaaaccacatggcgagacagtttaataggctgctcaaacagaaagtgatccaactaaggaaggaactccctctttctgcaataacttatgtcaatgtctttgctgctaagtataagctcatcagcaatgcaaagaagcttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

114

Amino Acids

12.99

Weight (kDa)

9.83

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14450
fragaria_vesca	FvH4_6g51890 FvH4_6g51890 FvH4_6g51900 FvH4_6g51910 FvH4_6g51910 FvH4_6g51910
malus_domestica	MD09G1021800.v1.1 MD09G1021900.v1.1 MD09G1022200.v1.1 MD17G1021700.v1.1
prunus_persica	Prupe.3G294400_v2.0.a1 Prupe.3G294400_v2.0.a1 Prupe.3G294500_v2.0.a1 Prupe.3G294500_v2.0.a1
pyrus_communis	pycom111g01820 pycom111g01830 pycom111g01860 pycom17g01880
rosa_chinensis	RchiOBHm_Chr2g0173381 RchiOBHm_Chr2g0173391
rosa_laevigata	RLG00000022184 RLG00000022185
rosa_multiflora	Rmu_co8202706.1_g000001 Rmu_co8257229.1_g000001 Rmu_ssc0000282.1_g000010 Rmu_ssc0000282.1_g000011
rosa_roxburghii	Rroxscaffold_2G00078930 Rroxscaffold_2G00078940
rosa_rugosa	Rorug02G0567700 Rorug02G0567800
rosa_samantha	Rh2AG648300 Rh2AG648400 Rh2BG658900 Rh2BG659000 Rh2CG624200 Rh2CG624300
rosa_wichuraiana	Rw2G053210 Rw2G053220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	27
AfaI	GTAC	1 cut(s)	7
AgsI	TTSAA	1 cut(s)	203
AluBI	AGCT	2 cut(s)	319, 340
AluI	AGCT	2 cut(s)	319, 340
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	244
Ama87I	CYCGRG	1 cut(s)	157
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	232, 305
ApoI	RAATTY	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	168
AvaI	CYCGRG	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	219, 292
BccI	CCATC	1 cut(s)	68
BciVI	GTATCC	2 cut(s)	93, 164
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	20
BfuI	GTATCC	2 cut(s)	93, 164
BisI	GCNGC	2 cut(s)	233, 306
BlsI	GCNGC	2 cut(s)	234, 307
Bme1390I	CCNGG	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	79, 184
Bse1I	ACTGG	2 cut(s)	46, 115
Bse3DI	GCAATG	1 cut(s)	334
BseDI	CCNNGG	2 cut(s)	79, 184
BseGI	GGATG	2 cut(s)	60, 147
BseMI	GCAATG	1 cut(s)	334
BseNI	ACTGG	2 cut(s)	46, 115
BseXI	GCAGC	2 cut(s)	219, 292
BshFI	GGCC	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	168
BsmAI	GTCTC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	178, 249
BspANI	GGCC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	334
BsrI	ACTGG	2 cut(s)	46, 115
BssECI	CCNNGG	2 cut(s)	79, 184
BssMI	GATC	2 cut(s)	178, 249
Bst4CI	ACNGT	2 cut(s)	188, 222
BstDEI	CTNAG	2 cut(s)	257, 309
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	60, 147
BstKTI	GATC	2 cut(s)	181, 252
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	178, 249
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	219, 292
BsuI	GTATCC	2 cut(s)	93, 164
BsuRI	GGCC	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	60, 147
BtsIMutI	CAGTG	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	2 cut(s)	152, 211
CviJI	RGCY	6 cut(s)	53, 59, 162, 232, 319, 340
CviKI_1	RGCY	6 cut(s)	53, 59, 162, 232, 319, 340
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	2 cut(s)	257, 309
DpnI	GATC	2 cut(s)	180, 251
DpnII	GATC	2 cut(s)	178, 249
EaeI	YGGCCR	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	164
FaeI	CATG	2 cut(s)	155, 214
FaiI	YATR	5 cut(s)	75, 153, 212, 291, 315
FatI	CATG	2 cut(s)	151, 210
Fnu4HI	GCNGC	2 cut(s)	233, 306
FokI	GGATG	2 cut(s)	47, 134
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	2 cut(s)	233, 306
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	2 cut(s)	233, 306
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	2 cut(s)	155, 214
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	338
HpaI	GTTAAC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	168
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	2 cut(s)	32, 97
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	2 cut(s)	188, 222
HpyCH4V	TGCA	2 cut(s)	281, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpyF3I	CTNAG	2 cut(s)	257, 309
Hsp92II	CATG	2 cut(s)	155, 214
KspAI	GTTAAC	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	178, 249
LpnPI	CCDG	5 cut(s)	45, 59, 82, 96, 181
Lsp1109I	GCAGC	2 cut(s)	219, 292
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	180, 251
MboI	GATC	2 cut(s)	178, 249
MhlI	GDGCHC	1 cut(s)	164
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	2 cut(s)	14, 27
MluNI	TGGCCA	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	3 cut(s)	74, 174, 282
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	2 cut(s)	42, 225
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	189
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	2 cut(s)	178, 249
NlaIII	CATG	2 cut(s)	155, 214
NmuCI	GTSAC	1 cut(s)	133
PctI	GAATGC	1 cut(s)	92
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	234, 307
PspPI	GGNCC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SaqAI	TTAA	2 cut(s)	42, 225
SatI	GCNGC	2 cut(s)	233, 306
Sau3AI	GATC	2 cut(s)	178, 249
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	4 cut(s)	124, 177, 321, 342
SinI	GGWCC	1 cut(s)	113
Sse9I	AATT	2 cut(s)	14, 27
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	166
TaaI	ACNGT	2 cut(s)	188, 222
TaqII	GACCGA	1 cut(s)	93
TasI	AATT	2 cut(s)	14, 27
Tru1I	TTAA	2 cut(s)	42, 225
Tru9I	TTAA	2 cut(s)	42, 225
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	232, 305
Tsp45I	GTSAC	1 cut(s)	133
TspRI	CASTG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	27
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.