Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002827

Physical Location & Seq

Genomic Coordinates Forward (+)

69303428 .. 69313087

Gene Structure 9660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0567800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGGAAATATCACAATGTACAAGACCCAGATTAGCACGAAGGTGAAGGGTAGTTTCAGATATTTTGACCCTGATTACTACTGGCGTCAACAATTAACTGAGAAGTCCGACGTGTACTCATTTGGTGCTAAAAAGTGTCATCGCAACGGGAACTTGATCAGATTGTTTGATCCAAACGTGAAGAGTGAAATTGCAGTCAGATGCTTGCATAAATTTGCTTCCATTGCAATGAGTTACATGGATAATAATGGGATCAATCGGCTGTCAATGGATGATGTTGTGAGAGGGCTTCAGTTTGCATTGCATATGCAGGAAAACAACGAGGATTATATTGATCACATTGAAAGGACGATTCAAGATGAGATTTCATTGGTCAAGGACAATGAAGGGTCTTGTTCTAGTGAGCAAAGTAGTGGGGCGAACGAAACCATTAAAGAGTTGACCAGGACAATTTTCTTTGAGATTATTGATCCGGTTGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

161

Amino Acids

18.62

Weight (kDa)

5.81

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14450
fragaria_vesca	FvH4_6g51890 FvH4_6g51890 FvH4_6g51900 FvH4_6g51910 FvH4_6g51910 FvH4_6g51910
malus_domestica	MD09G1021800.v1.1 MD09G1021900.v1.1 MD09G1022200.v1.1 MD17G1021700.v1.1
prunus_persica	Prupe.3G294400_v2.0.a1 Prupe.3G294400_v2.0.a1 Prupe.3G294500_v2.0.a1 Prupe.3G294500_v2.0.a1
pyrus_communis	pycom111g01820 pycom111g01830 pycom111g01860 pycom17g01880
rosa_chinensis	RchiOBHm_Chr2g0173381 RchiOBHm_Chr2g0173391
rosa_laevigata	RLG00000022184 RLG00000022185
rosa_multiflora	Rmu_co8202706.1_g000001 Rmu_co8257229.1_g000001 Rmu_ssc0000282.1_g000010 Rmu_ssc0000282.1_g000011
rosa_roxburghii	Rroxscaffold_2G00078930 Rroxscaffold_2G00078940
rosa_rugosa	Rorug02G0567700 Rorug02G0567800
rosa_samantha	Rh2AG648300 Rh2AG648400 Rh2BG658900 Rh2BG659000 Rh2CG624200 Rh2CG624300
rosa_wichuraiana	Rw2G053210 Rw2G053220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	164, 260, 464
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	85
AfaI	GTAC	2 cut(s)	20, 116
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	2 cut(s)	344, 356
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	443
AleI	CACNNNNGTG	1 cut(s)	41
AlwI	GGATC	3 cut(s)	164, 260, 464
ApoI	RAATTY	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	445
BclI	TGATCA	2 cut(s)	156, 334
BfaI	CTAG	1 cut(s)	399
Bme1390I	CCNGG	1 cut(s)	445
BmgBI	CACGTC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	445
BmsI	GCATC	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	472
Bse1I	ACTGG	1 cut(s)	86
Bse3DI	GCAATG	3 cut(s)	222, 234, 299
BseBI	CCWGG	1 cut(s)	445
BseGI	GGATG	1 cut(s)	277
BseMI	GCAATG	3 cut(s)	222, 234, 299
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	473
Bsp1407I	TGTACA	1 cut(s)	18
Bsp143I	GATC	5 cut(s)	156, 169, 252, 334, 469
BspCNI	CTCAG	1 cut(s)	91
BspPI	GGATC	3 cut(s)	164, 260, 464
BsrDI	GCAATG	3 cut(s)	222, 234, 299
BsrGI	TGTACA	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	86
BssMI	GATC	5 cut(s)	156, 169, 252, 334, 469
BssNI	GRCGYC	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	176
BstACI	GRCGYC	1 cut(s)	85
BstAUI	TGTACA	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	5 cut(s)	159, 172, 255, 337, 472
BstMBI	GATC	5 cut(s)	156, 169, 252, 334, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	445
BstSCI	CCNGG	1 cut(s)	443
BtgZI	GCGATG	1 cut(s)	125
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	206
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	19, 115
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	2 cut(s)	262, 289
CviKI_1	RGCY	2 cut(s)	262, 289
CviQI	GTAC	2 cut(s)	19, 115
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	5 cut(s)	158, 171, 254, 336, 471
DpnII	GATC	5 cut(s)	156, 169, 252, 334, 469
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	443
FaeI	CATG	1 cut(s)	241
FaiI	YATR	5 cut(s)	210, 239, 306, 308, 330
FatI	CATG	1 cut(s)	237
FauNDI	CATATG	1 cut(s)	306
FbaI	TGATCA	2 cut(s)	156, 334
FokI	GGATG	1 cut(s)	284
FspBI	CTAG	1 cut(s)	399
HapII	CCGG	1 cut(s)	473
HgaI	GACGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	241
HincII	GTYRAC	2 cut(s)	89, 441
HindII	GTYRAC	2 cut(s)	89, 441
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	3 cut(s)	89, 115, 441
Hpy188I	TCNGA	4 cut(s)	59, 109, 161, 200
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	3 cut(s)	89, 115, 441
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	3 cut(s)	34, 40, 380
HpyCH4IV	ACGT	2 cut(s)	111, 177
HpyCH4V	TGCA	6 cut(s)	194, 208, 227, 299, 304, 310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	2 cut(s)	111, 177
Hsp92I	GRCGYC	1 cut(s)	85
Hsp92II	CATG	1 cut(s)	241
Ksp22I	TGATCA	2 cut(s)	156, 334
Kzo9I	GATC	5 cut(s)	156, 169, 252, 334, 469
LpnPI	CCDG	6 cut(s)	41, 67, 84, 296, 430, 457
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	2 cut(s)	111, 177
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	5 cut(s)	158, 171, 254, 336, 471
MboI	GATC	5 cut(s)	156, 169, 252, 334, 469
MboII	GAAGA	1 cut(s)	193
MluCI	AATT	4 cut(s)	92, 189, 212, 450
MmeI	TCCRAC	2 cut(s)	132, 457
MnlI	CCTC	2 cut(s)	278, 316
MseI	TTAA	2 cut(s)	95, 432
MslI	CAYNNNNRTG	2 cut(s)	41, 227
MspI	CCGG	1 cut(s)	473
MspR9I	CCNGG	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	445
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeI	CATATG	1 cut(s)	306
NdeII	GATC	5 cut(s)	156, 169, 252, 334, 469
NlaIII	CATG	1 cut(s)	241
OliI	CACNNNNGTG	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	352
Psp6I	CCWGG	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	443
RsaI	GTAC	2 cut(s)	20, 116
RsaNI	GTAC	2 cut(s)	19, 115
RseI	CAYNNNNRTG	2 cut(s)	41, 227
SaqAI	TTAA	2 cut(s)	95, 432
Sau3AI	GATC	5 cut(s)	156, 169, 252, 334, 469
ScrFI	CCNGG	1 cut(s)	445
SetI	ASST	3 cut(s)	45, 114, 180
SfaNI	GCATC	1 cut(s)	191
SmiMI	CAYNNNNRTG	2 cut(s)	41, 227
Sse9I	AATT	4 cut(s)	92, 189, 212, 450
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	443
TaiI	ACGT	2 cut(s)	114, 180
TasI	AATT	4 cut(s)	92, 189, 212, 450
TatI	WGTACW	2 cut(s)	18, 114
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	2 cut(s)	95, 432
Tru9I	TTAA	2 cut(s)	95, 432
TspDTI	ATGAA	2 cut(s)	357, 399
XapI	RAATTY	1 cut(s)	212
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.