pycom111g01820

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Forward (+)
1112821 .. 1114809
1989 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g01820.2

Sequence Viewer

Length: 1302 bp
ATGCCTGTTTGTTTTTCTCATCACCTCTTTGTACACAGTATAAAGAAACACTCTTCCTCCATATATATAGTAAAGGATTTGGACCTCCCTCATGTATCCTGCTCTTGCGTTTTGAGTTGCAGTATGTTTCGTGTGGTGGAAATGCAGATGGCTAGATTCGTCGTTGCCGGTTGTTTCGCTATGTGTTTACTGAGTGTGGGAGGGGAAGGGGTGATAGACACATCGTCGCGTTGTGATTTTCCGGCAATTTACAACTTTGGAGACTCCAACTCAGATACTGGTGGTAACTCAGCTTCATTTTACCCCATGGTATCACCCTGTGGTGAAACTTTCTTCCACAGACCCGCCGGAAGGGGTTGTGACGGCCGTCTCATCATAGATTTTATTGCAAAGCATTTGGAGTTGCCATACTTGAGTCCATATTTGGACTCACTAGAGAGCAATTTCAGGCACGGTGCCAATTTTGCTAGCGGCGGATCTACCATCCGGCCTTACAAGGAAGCCATGTTTGAAAATGGTGTGAGCCCTTTTTATCTTGAAATCCAGATTGCTCAATACCAGCAGTTCAAGTCACGTACCACCACTCTTTCCAAACAAGCCAAGAAACAATCCGACAGATTCCCAATAGTCGATGACTTCTCAAGGGCGCTCTACACTTTCGATACAGGACAGAATGATCTAGCTGCTGGTTTTCGGACAAAGTTCAGCAGTGAACAATTTGAATCAGAAATCACAGACATGATTAACCAGCATGCTAATGCCGTACGAAATTTGTATGAACAAGGGGCAAGGACATTCTGGATACACAACACGGGTCCGATTGGCTGCTTGGGAGTGACCTTAAGCTACCTCCATAATCCGAACCCCGGCTTCATTGACAGCCAGGGTTGTGACAAGTTTCAGAACGACATGGCTAGGACGTTCAATAGGCAGCTGGAGCAGAAAGTGATTCAGCTAAGGAAGGAGCTCCCCCTTTCTGCCATAACATATGTCGATATCTTCGCTGCAAAGTATGAACTTCTCAGCAACGCAAAGAAGAACGGATTTTTGGATAAGGCAAGCATCTGCTGTGGATATCATGACGAAAACAACCATGTGTGGTGTGGGAATAAGGGCACCATAACTAATGGGACTCAAGTATATGCTGGTTCATGTAAGGATCCTTCCTTGTATATCAGCTGGGATGGAGTACACTACACCGAGGCTGCGAACCGTTGGATTGCAGATCGAATAGTCCACGGTTCGTTCACAGACCCGCCGGTTTCGATCAAAAGTTCATGTCATAGAACTCAACCTGAGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

434

Amino Acids

48.41

Weight (kDa)

6.59

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 455, 1115
AccII CGCG 1 cut(s) 229
AciI CCGC 4 cut(s) 345, 471, 474, 1256
AclWI GGATC 3 cut(s) 484, 1154, 1167
AcoI YGGCCR 1 cut(s) 364
AcsI RAATTY 1 cut(s) 769
AdeI CACNNNGTG 1 cut(s) 320
AfaI GTAC 4 cut(s) 33, 577, 765, 1191
AfiI CCNNNNNNNGG 2 cut(s) 351, 866
AflII CTTAAG 1 cut(s) 841
AgsI TTSAA 5 cut(s) 512, 539, 568, 722, 925
AhdI GACNNNNNGTC 1 cut(s) 223
AjnI CCWGG 1 cut(s) 882
AjuI GAANNNNNNNTTGG 2 cut(s) 1031, 1063
AluBI AGCT 7 cut(s) 293, 683, 846, 934, 955, 967, 1179
AluI AGCT 7 cut(s) 293, 683, 846, 934, 955, 967, 1179
Alw21I GWGCWC 1 cut(s) 969
Alw26I GTCTC 2 cut(s) 255, 374
AlwI GGATC 3 cut(s) 484, 1154, 1167
AlwNI CAGNNNCTG 1 cut(s) 278
AoxI GGCC 2 cut(s) 364, 488
ApeKI GCWGC 5 cut(s) 683, 825, 931, 1004, 1205
ApoI RAATTY 1 cut(s) 769
AspLEI GCGC 1 cut(s) 649
AspS9I GGNCC 2 cut(s) 82, 815
AsuC2I CCSGG 1 cut(s) 867
AsuHPI GGTGA 4 cut(s) 14, 223, 306, 335
AsuNHI GCTAGC 1 cut(s) 467
AvaII GGWCC 2 cut(s) 82, 815
BaeGI GKGCMC 1 cut(s) 1118
BamHI GGATCC 1 cut(s) 1159
BanI GGYRCC 2 cut(s) 455, 1115
BanII GRGCYC 2 cut(s) 527, 969
BarI GAAGNNNNNNTAC 4 cut(s) 277, 309, 1147, 1179
Bbv12I GWGCWC 1 cut(s) 969
BbvI GCAGC 5 cut(s) 670, 812, 943, 991, 1192
BccI CCATC 3 cut(s) 142, 491, 1178
BceAI ACGGC 3 cut(s) 351, 379, 746
BciT130I CCWGG 1 cut(s) 884
BciVI GTATCC 2 cut(s) 106, 795
BcnI CCSGG 1 cut(s) 867
BcoDI GTCTC 2 cut(s) 255, 374
BfaI CTAG 5 cut(s) 153, 434, 468, 680, 915
BfoI RGCGCY 1 cut(s) 650
BfrI CTTAAG 1 cut(s) 841
BfuI GTATCC 2 cut(s) 106, 795
BisI GCNGC 6 cut(s) 472, 684, 826, 932, 1005, 1206
BlsI GCNGC 6 cut(s) 473, 685, 827, 933, 1006, 1207
Bme1390I CCNGG 2 cut(s) 867, 884
Bme18I GGWCC 2 cut(s) 82, 815
BmeRI GACNNNNNGTC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 82, 815
BmiI GGNNCC 4 cut(s) 457, 816, 1117, 1161
BmrFI CCNGG 2 cut(s) 867, 884
BmsI GCATC 1 cut(s) 1071
BmtI GCTAGC 1 cut(s) 471
BoxI GACNNNNGTC 1 cut(s) 366
BpmI CTGGAG 1 cut(s) 956
Bpu10I CCTNAGC 1 cut(s) 956
BpuEI CTTGAG 3 cut(s) 433, 625, 1119
BpuMI CCSGG 1 cut(s) 867
BsaAI YACGTR 1 cut(s) 575
BsaJI CCNNGG 5 cut(s) 306, 865, 883, 1200, 1237
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 866
Bse118I RCCGGY 2 cut(s) 167, 1258
Bse1I ACTGG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 884
BseDI CCNNGG 5 cut(s) 306, 865, 883, 1200, 1237
BseGI GGATG 2 cut(s) 483, 1189
BseLI CCNNNNNNNGG 2 cut(s) 351, 866
BseMII CTCAG 5 cut(s) 182, 285, 303, 1036, 1287
BseNI ACTGG 1 cut(s) 283
BseSI GKGCMC 1 cut(s) 1118
BseX3I CGGCCG 1 cut(s) 364
BseXI GCAGC 5 cut(s) 670, 812, 943, 991, 1192
BseYI CCCAGC 1 cut(s) 1179
Bsh1236I CGCG 1 cut(s) 229
Bsh1285I CGRYCG 1 cut(s) 367
BshFI GGCC 2 cut(s) 366, 490
BshNI GGYRCC 2 cut(s) 455, 1115
BsiEI CGRYCG 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 969
BsiSI CCGG 6 cut(s) 168, 242, 348, 487, 867, 1259
BsiWI CGTACG 1 cut(s) 763
BslFI GGGAC 1 cut(s) 1144
BslI CCNNNNNNNGG 2 cut(s) 351, 866
BsmAI GTCTC 2 cut(s) 255, 374
BsmBI CGTCTC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 1144
BsnI GGCC 2 cut(s) 366, 490
Bsp1286I GDGCHC 3 cut(s) 527, 969, 1118
Bsp1407I TGTACA 1 cut(s) 31
Bsp143I GATC 5 cut(s) 476, 676, 1159, 1225, 1266
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 4 cut(s) 345, 471, 474, 1256
BspANI GGCC 2 cut(s) 366, 490
BspCNI CTCAG 5 cut(s) 183, 284, 302, 1035, 1288
BspFNI CGCG 1 cut(s) 229
BspHI TCATGA 1 cut(s) 1078
BspLI GGNNCC 4 cut(s) 457, 816, 1117, 1161
BspOI GCTAGC 1 cut(s) 471
BspPI GGATC 3 cut(s) 484, 1154, 1167
BspT107I GGYRCC 2 cut(s) 455, 1115
BspTI CTTAAG 1 cut(s) 841
BsrFI RCCGGY 2 cut(s) 167, 1258
BsrGI TGTACA 1 cut(s) 31
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 2 cut(s) 167, 1258
BssECI CCNNGG 5 cut(s) 306, 865, 883, 1200, 1237
BssMI GATC 5 cut(s) 476, 676, 1159, 1225, 1266
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 884
Bst4CI ACNGT 4 cut(s) 38, 455, 1214, 1241
Bst6I CTCTTC 1 cut(s) 58
BstAFI CTTAAG 1 cut(s) 841
BstAUI TGTACA 1 cut(s) 31
BstBAI YACGTR 1 cut(s) 575
BstC8I GCNNGC 3 cut(s) 469, 753, 1060
BstDEI CTNAG 6 cut(s) 191, 271, 289, 956, 1022, 1296
BstDSI CCRYGG 2 cut(s) 306, 1237
BstF5I GGATG 2 cut(s) 483, 1189
BstFNI CGCG 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 650
BstHHI GCGC 1 cut(s) 649
BstKTI GATC 5 cut(s) 479, 679, 1162, 1228, 1269
BstMAI GTCTC 2 cut(s) 255, 374
BstMBI GATC 5 cut(s) 476, 676, 1159, 1225, 1266
BstMCI CGRYCG 1 cut(s) 367
BstMWI GCNNNNNNNGC 2 cut(s) 464, 937
BstNI CCWGG 1 cut(s) 884
BstNSI RCATGY 1 cut(s) 755
BstPAI GACNNNNGTC 1 cut(s) 366
BstSCI CCNGG 2 cut(s) 865, 882
BstSLI GKGCMC 1 cut(s) 1118
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 5 cut(s) 670, 812, 943, 991, 1192
BstX2I RGATCY 2 cut(s) 476, 1159
BstYI RGATCY 2 cut(s) 476, 1159
BstZI CGGCCG 1 cut(s) 364
BsuI GTATCC 2 cut(s) 106, 795
BsuRI GGCC 2 cut(s) 366, 490
BtgI CCRYGG 2 cut(s) 306, 1237
BtsCI GGATG 2 cut(s) 483, 1189
BtsI GCAGTG 1 cut(s) 715
BtsIMutI CAGTG 1 cut(s) 715
Cac8I GCNNGC 3 cut(s) 469, 753, 1060
CaiI CAGNNNCTG 1 cut(s) 278
CciI TCATGA 1 cut(s) 1078
CfoI GCGC 1 cut(s) 649
Cfr10I RCCGGY 2 cut(s) 167, 1258
Cfr13I GGNCC 2 cut(s) 82, 815
Csp6I GTAC 4 cut(s) 32, 576, 764, 1190
CviQI GTAC 4 cut(s) 32, 576, 764, 1190
DdeI CTNAG 6 cut(s) 191, 271, 289, 956, 1022, 1296
DpnI GATC 5 cut(s) 478, 678, 1161, 1227, 1268
DpnII GATC 5 cut(s) 476, 676, 1159, 1225, 1266
DraIII CACNNNGTG 1 cut(s) 320
DriI GACNNNNNGTC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 364
EagI CGGCCG 1 cut(s) 364
Eam1104I CTCTTC 1 cut(s) 58
Eam1105I GACNNNNNGTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 58
EciI GGCGGA 1 cut(s) 489
Ecl136II GAGCTC 1 cut(s) 967
EclXI CGGCCG 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 527, 969
Eco32I GATATC 2 cut(s) 997, 1076
Eco47I GGWCC 2 cut(s) 82, 815
Eco52I CGGCCG 1 cut(s) 364
Eco53kI GAGCTC 1 cut(s) 967
EcoICRI GAGCTC 1 cut(s) 967
EcoRII CCWGG 1 cut(s) 882
EcoRV GATATC 2 cut(s) 997, 1076
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 527, 969
ErhI CCWWGG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 374
FaqI GGGAC 1 cut(s) 1144
FauI CCCGC 2 cut(s) 352, 1263
FauNDI CATATG 1 cut(s) 988
Fnu4HI GCNGC 6 cut(s) 472, 684, 826, 932, 1005, 1206
FokI GGATG 2 cut(s) 470, 1196
FriOI GRGCYC 2 cut(s) 527, 969
Fsp4HI GCNGC 6 cut(s) 472, 684, 826, 932, 1005, 1206
FspBI CTAG 5 cut(s) 153, 434, 468, 680, 915
GlaI GCGC 1 cut(s) 648
GluI GCNGC 6 cut(s) 472, 684, 826, 932, 1005, 1206
GsaI CCCAGC 1 cut(s) 1183
GsuI CTGGAG 1 cut(s) 956
HaeII RGCGCY 1 cut(s) 650
HaeIII GGCC 2 cut(s) 366, 490
HapII CCGG 6 cut(s) 168, 242, 348, 487, 867, 1259
HhaI GCGC 1 cut(s) 649
Hin6I GCGC 1 cut(s) 647
HinP1I GCGC 1 cut(s) 647
HinfI GANTC 8 cut(s) 156, 263, 415, 428, 618, 722, 949, 1132
HpaII CCGG 6 cut(s) 168, 242, 348, 487, 867, 1259
HphI GGTGA 4 cut(s) 14, 223, 306, 335
Hpy166II GTNNAC 6 cut(s) 34, 188, 713, 1192, 1237, 1248
Hpy188I TCNGA 7 cut(s) 274, 613, 696, 727, 819, 861, 903
Hpy188III TCNNGA 4 cut(s) 536, 544, 799, 1079
Hpy8I GTNNAC 6 cut(s) 34, 188, 713, 1192, 1237, 1248
Hpy99I CGWCG 2 cut(s) 164, 229
HpyAV CCTTC 4 cut(s) 200, 345, 955, 1173
HpyCH4III ACNGT 4 cut(s) 38, 455, 1214, 1241
HpyCH4IV ACGT 2 cut(s) 574, 920
HpyCH4V TGCA 5 cut(s) 120, 145, 389, 1007, 1223
HpyF10VI GCNNNNNNNGC 2 cut(s) 464, 937
HpyF3I CTNAG 6 cut(s) 191, 271, 289, 956, 1022, 1296
HpySE526I ACGT 2 cut(s) 574, 920
HspAI GCGC 1 cut(s) 647
Kzo9I GATC 5 cut(s) 476, 676, 1159, 1225, 1266
LmnI GCTCC 3 cut(s) 937, 964, 972
Lsp1109I GCAGC 5 cut(s) 670, 812, 943, 991, 1192
LweI GCATC 1 cut(s) 1071
MaeI CTAG 5 cut(s) 153, 434, 468, 680, 915
MaeII ACGT 2 cut(s) 574, 920
MaeIII GTNAC 5 cut(s) 284, 359, 570, 835, 890
MalI GATC 5 cut(s) 478, 678, 1161, 1227, 1268
MboI GATC 5 cut(s) 476, 676, 1159, 1225, 1266
MboII GAAGA 4 cut(s) 45, 325, 991, 1048
MflI RGATCY 2 cut(s) 476, 1159
MhlI GDGCHC 3 cut(s) 527, 969, 1118
MluCI AATT 5 cut(s) 246, 442, 460, 716, 769
MlyI GAGTC 4 cut(s) 257, 422, 424, 1126
MmeI TCCRAC 3 cut(s) 291, 636, 1196
MnlI CCTC 7 cut(s) 35, 67, 95, 99, 194, 860, 1195
MseI TTAA 2 cut(s) 744, 842
MslI CAYNNNNRTG 2 cut(s) 737, 756
MspA1I CMGCKG 2 cut(s) 934, 1179
MspCI CTTAAG 1 cut(s) 841
MspI CCGG 6 cut(s) 168, 242, 348, 487, 867, 1259
MspR9I CCNGG 2 cut(s) 867, 884
MvaI CCWGG 1 cut(s) 884
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 2 cut(s) 464, 937
NciI CCSGG 1 cut(s) 867
NcoI CCATGG 1 cut(s) 306
NdeI CATATG 1 cut(s) 988
NdeII GATC 5 cut(s) 476, 676, 1159, 1225, 1266
NheI GCTAGC 1 cut(s) 467
NlaIV GGNNCC 4 cut(s) 457, 816, 1117, 1161
NmuCI GTSAC 4 cut(s) 359, 570, 835, 890
NspI RCATGY 1 cut(s) 755
PaeI GCATGC 1 cut(s) 755
PagI TCATGA 1 cut(s) 1078
PfeI GAWTC 4 cut(s) 156, 618, 722, 949
Pfl23II CGTACG 1 cut(s) 763
PkrI GCNGC 6 cut(s) 473, 685, 827, 933, 1006, 1207
PleI GAGTC 4 cut(s) 257, 422, 423, 1126
PpsI GAGTC 4 cut(s) 257, 422, 423, 1126
Ppu21I YACGTR 1 cut(s) 575
PshAI GACNNNNGTC 1 cut(s) 366
Psp124BI GAGCTC 1 cut(s) 969
Psp6I CCWGG 1 cut(s) 882
PspFI CCCAGC 1 cut(s) 1179
PspGI CCWGG 1 cut(s) 882
PspLI CGTACG 1 cut(s) 763
PspN4I GGNNCC 4 cut(s) 457, 816, 1117, 1161
PspPI GGNCC 2 cut(s) 82, 815
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 2 cut(s) 476, 1159
PvuII CAGCTG 2 cut(s) 934, 1179
RsaI GTAC 4 cut(s) 33, 577, 765, 1191
RsaNI GTAC 4 cut(s) 32, 576, 764, 1190
RseI CAYNNNNRTG 2 cut(s) 737, 756
SacI GAGCTC 1 cut(s) 969
SaqAI TTAA 2 cut(s) 744, 842
SatI GCNGC 6 cut(s) 472, 684, 826, 932, 1005, 1206
Sau3AI GATC 5 cut(s) 476, 676, 1159, 1225, 1266
Sau96I GGNCC 2 cut(s) 82, 815
SchI GAGTC 4 cut(s) 257, 422, 424, 1126
ScrFI CCNGG 2 cut(s) 867, 884
SduI GDGCHC 3 cut(s) 527, 969, 1118
SfaNI GCATC 1 cut(s) 1071
SinI GGWCC 2 cut(s) 82, 815
SmiMI CAYNNNNRTG 2 cut(s) 737, 756
SmlI CTYRAG 4 cut(s) 412, 640, 841, 1134
SmoI CTYRAG 4 cut(s) 412, 640, 841, 1134
SphI GCATGC 1 cut(s) 755
Sse9I AATT 5 cut(s) 246, 442, 460, 716, 769
SsiI CCGC 4 cut(s) 345, 471, 474, 1256
SspMI CTAG 5 cut(s) 153, 434, 468, 680, 915
SstI GAGCTC 1 cut(s) 969
StyD4I CCNGG 2 cut(s) 865, 882
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 4 cut(s) 38, 455, 1214, 1241
TaiI ACGT 2 cut(s) 577, 923
TaqI TCGA 5 cut(s) 630, 660, 993, 1228, 1265
TasI AATT 5 cut(s) 246, 442, 460, 716, 769
TatI WGTACW 2 cut(s) 31, 1189
TauI GCSGC 1 cut(s) 474
TfiI GAWTC 4 cut(s) 156, 618, 722, 949
Tru1I TTAA 2 cut(s) 744, 842
Tru9I TTAA 2 cut(s) 744, 842
TscAI CASTG 1 cut(s) 715
TseFI GTSAC 4 cut(s) 359, 570, 835, 890
TseI GCWGC 5 cut(s) 683, 825, 931, 1004, 1205
Tsp45I GTSAC 4 cut(s) 359, 570, 835, 890
TspDTI ATGAA 6 cut(s) 285, 792, 862, 1029, 1140, 1266
TspGWI ACGGA 1 cut(s) 1056
TspRI CASTG 1 cut(s) 715
Vha464I CTTAAG 1 cut(s) 841
VpaK11BI GGWCC 2 cut(s) 82, 815
XapI RAATTY 1 cut(s) 769
XceI RCATGY 1 cut(s) 755
XcmI CCANNNNNNNNNTGG 1 cut(s) 1100
XspI CTAG 5 cut(s) 153, 434, 468, 680, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.