Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002827

Physical Location & Seq

Genomic Coordinates Reverse (-)

26267829 .. 26270513

Gene Structure 2685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G294500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAGTTGCATGTTTGGTGTGGTGAAAATGGAGAGGGTAAGATTATTTGTTGTTGTTGCCAGTATTTTGGTTATGTGTGTAGTGAGGAGCGTGGGAGGTGAAGAGGTGGCAGACACATTATCAGCCTGTGATTTTCCAGCAATTTACAACTTTGGAGACTCAAATTCAGACACTGGTGGTATATCTGCTGCATTCTACCCAATGGCATCACCCTGTGGTGAAACTTTCTTCCACAGACCAGCTGGCAGGGGTTGTGATGGCCGTCTGATGATTGATTTTATTGCAAAGCACTTGGGATTGCCATACTTGAGCCCATATTTGGACTCACTTGAGAGCAATTTCAGACATGGTGCCAATTTTGCTACCGGAGGGGCAACCATCATCCGGTATAATGAATCCTGGTTTCAGAATGGTGTGAGCCCCTTTTCTCTTGACATCCAGATTGCTCAGTATCAACAGCTCAAGTCACGTACCACCAGTCTTTACAACCGAGCCAAGAAACAACCCCACAGATTCCCAAGAGTTGATGACTTCTCAAAGGCTCTTTACATTTTTGATATAGGACAAAATGATGTAGCCGCTGGTATTCGGAAAATGAGTGATGAACAATTTCAAGCACAAATCCCAGACATCATTAACCAGTTGGCTACAGCCATCCGAAATTTGTATGATCAAGGCGCAAGAACATTCTGGATACACAACACTGGTCCCATTGGGTGCTTGGCAGTGACCTTACACTACCTCCATAATCCGAGCCCTGACTATGTTGACCGCCGTGGCTGCGTCAAGTTTCAAAACGACATGGCTAGACAGTTCAATAGGGCGCTCAAGCAGAAAGTGTTTCAACTAAGGAAGGAGCTCCTCCTTGCTGCAATAACACATGTCAATGTCTTTGCTGCAAAGTATAAACTTCTCAGCAATGCAAAGAAGCATGGATTTCTGGACAAGACAAGGATCTGCTGTGGATATCATGAAGATAGCAACCATGTGTATTGTGGGAATAAGGGAATCATAAATGGCACTCAAGTATATGCTGGTTCATGTGAAGATCCTTCCTTGTATATTAGCTGGGATGGTGTACACTACACTGAAGCTGCAAATCATTGGATTGCTAATCAATTAATCAGTGGTTCATTCTCAGACCCACCACTTCCAATCACAAATTCATGCCATAGGCTTCAACCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

397

Amino Acids

44.29

Weight (kDa)

8.52

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14450
fragaria_vesca	FvH4_6g51890 FvH4_6g51890 FvH4_6g51900 FvH4_6g51910 FvH4_6g51910 FvH4_6g51910
malus_domestica	MD09G1021800.v1.1 MD09G1021900.v1.1 MD09G1022200.v1.1 MD17G1021700.v1.1
prunus_persica	Prupe.3G294400_v2.0.a1 Prupe.3G294400_v2.0.a1 Prupe.3G294500_v2.0.a1 Prupe.3G294500_v2.0.a1
pyrus_communis	pycom111g01820 pycom111g01830 pycom111g01860 pycom17g01880
rosa_chinensis	RchiOBHm_Chr2g0173381 RchiOBHm_Chr2g0173391
rosa_laevigata	RLG00000022184 RLG00000022185
rosa_multiflora	Rmu_co8202706.1_g000001 Rmu_co8257229.1_g000001 Rmu_ssc0000282.1_g000010 Rmu_ssc0000282.1_g000011
rosa_roxburghii	Rroxscaffold_2G00078930 Rroxscaffold_2G00078940
rosa_rugosa	Rorug02G0567700 Rorug02G0567800
rosa_samantha	Rh2AG648300 Rh2AG648400 Rh2BG658900 Rh2BG659000 Rh2CG624200 Rh2CG624300
rosa_wichuraiana	Rw2G053210 Rw2G053220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	350
AciI	CCGC	2 cut(s)	579, 772
AclWI	GGATC	2 cut(s)	962, 1043
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	3 cut(s)	163, 661, 1162
AcuI	CTGAAG	1 cut(s)	1110
AdeI	CACNNNGTG	1 cut(s)	215
AfaI	GTAC	2 cut(s)	472, 1080
AfiI	CCNNNNNNNGG	2 cut(s)	319, 384
AflIII	ACRYGT	1 cut(s)	880
AgsI	TTSAA	5 cut(s)	614, 794, 817, 845, 1181
AjnI	CCWGG	1 cut(s)	398
AjuI	GAANNNNNNNTTGG	2 cut(s)	1147, 1179
AluBI	AGCT	5 cut(s)	242, 460, 859, 1068, 1094
AluI	AGCT	5 cut(s)	242, 460, 859, 1068, 1094
Alw21I	GWGCWC	1 cut(s)	861
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	2 cut(s)	962, 1043
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	5 cut(s)	188, 780, 869, 896, 1094
ApoI	RAATTY	3 cut(s)	163, 661, 1162
AseI	ATTAAT	1 cut(s)	1121
Asp700I	GAANNNNTTC	1 cut(s)	609
AspLEI	GCGC	2 cut(s)	680, 826
AspS9I	GGNCC	1 cut(s)	707
AsuHPI	GGTGA	4 cut(s)	34, 110, 201, 230
AvaII	GGWCC	1 cut(s)	707
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	4 cut(s)	314, 422, 758, 861
Bbv12I	GWGCWC	1 cut(s)	861
BbvI	GCAGC	5 cut(s)	175, 767, 856, 883, 1081
BccI	CCATC	4 cut(s)	251, 386, 662, 1067
BceAI	ACGGC	2 cut(s)	246, 759
BciT130I	CCWGG	1 cut(s)	400
BciVI	GTATCC	1 cut(s)	687
BclI	TGATCA	1 cut(s)	670
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	1 cut(s)	807
BfmI	CTRYAG	2 cut(s)	648, 1187
BfoI	RGCGCY	1 cut(s)	827
BfuI	GTATCC	1 cut(s)	687
BisI	GCNGC	6 cut(s)	189, 579, 781, 870, 897, 1095
BlsI	GCNGC	6 cut(s)	190, 580, 782, 871, 898, 1096
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	1 cut(s)	707
BmgT120I	GGNCC	1 cut(s)	707
BmiI	GGNNCC	2 cut(s)	352, 709
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	1 cut(s)	215
BpuEI	CTTGAG	5 cut(s)	328, 350, 446, 812, 1008
BsaAI	YACGTR	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	775
BsaWI	WCCGGW	2 cut(s)	365, 384
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 384
Bse1I	ACTGG	5 cut(s)	60, 178, 477, 640, 709
Bse3DI	GCAATG	1 cut(s)	925
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	775
BseGI	GGATG	4 cut(s)	381, 435, 654, 1078
BseLI	CCNNNNNNNGG	2 cut(s)	319, 384
BseMI	GCAATG	1 cut(s)	925
BseMII	CTCAG	3 cut(s)	461, 928, 1152
BseNI	ACTGG	5 cut(s)	60, 178, 477, 640, 709
BseRI	GAGGAG	2 cut(s)	100, 851
BseXI	GCAGC	5 cut(s)	175, 767, 856, 883, 1081
BseYI	CCCAGC	1 cut(s)	1068
BshFI	GGCC	1 cut(s)	261
BshNI	GGYRCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	861
BsiSI	CCGG	2 cut(s)	366, 385
BslFI	GGGAC	1 cut(s)	693
BslI	CCNNNNNNNGG	2 cut(s)	319, 384
BsmAI	GTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	693
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	261
Bsp1286I	GDGCHC	4 cut(s)	314, 422, 758, 861
Bsp1407I	TGTACA	1 cut(s)	1078
Bsp143I	GATC	3 cut(s)	670, 954, 1048
BspACI	CCGC	2 cut(s)	579, 772
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	3 cut(s)	460, 927, 1151
BspHI	TCATGA	1 cut(s)	970
BspLI	GGNNCC	2 cut(s)	352, 709
BspPI	GGATC	2 cut(s)	962, 1043
BspT107I	GGYRCC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	925
BsrGI	TGTACA	1 cut(s)	1078
BsrI	ACTGG	5 cut(s)	60, 178, 477, 640, 709
BssECI	CCNNGG	1 cut(s)	775
BssMI	GATC	3 cut(s)	670, 954, 1048
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	1 cut(s)	813
Bst6I	CTCTTC	1 cut(s)	96
BstAUI	TGTACA	1 cut(s)	1078
BstBAI	YACGTR	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	4 cut(s)	447, 848, 914, 1138
BstDSI	CCRYGG	1 cut(s)	775
BstF5I	GGATG	4 cut(s)	381, 435, 654, 1078
BstH2I	RGCGCY	1 cut(s)	827
BstHHI	GCGC	2 cut(s)	680, 826
BstKTI	GATC	3 cut(s)	673, 957, 1051
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	3 cut(s)	670, 954, 1048
BstMWI	GCNNNNNNNGC	2 cut(s)	359, 780
BstNI	CCWGG	1 cut(s)	400
BstNSI	RCATGY	2 cut(s)	13, 884
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	2 cut(s)	648, 1187
BstV1I	GCAGC	5 cut(s)	175, 767, 856, 883, 1081
BstX2I	RGATCY	2 cut(s)	954, 1048
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	2 cut(s)	954, 1048
BsuI	GTATCC	1 cut(s)	687
BsuRI	GGCC	1 cut(s)	261
BtgI	CCRYGG	1 cut(s)	775
BtsCI	GGATG	4 cut(s)	381, 435, 654, 1078
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	5 cut(s)	171, 702, 732, 1086, 1132
Cac8I	GCNNGC	1 cut(s)	244
CaiI	CAGNNNCTG	1 cut(s)	173
CciI	TCATGA	1 cut(s)	970
CfoI	GCGC	2 cut(s)	680, 826
Cfr13I	GGNCC	1 cut(s)	707
CseI	GACGC	1 cut(s)	772
Csp6I	GTAC	2 cut(s)	471, 1079
CviAII	CATG	9 cut(s)	10, 347, 802, 881, 932, 971, 986, 1041, 1167
CviQI	GTAC	2 cut(s)	471, 1079
DdeI	CTNAG	4 cut(s)	447, 848, 914, 1138
DpnI	GATC	3 cut(s)	672, 956, 1050
DpnII	GATC	3 cut(s)	670, 954, 1048
DraIII	CACNNNGTG	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	859
Eco24I	GRGCYC	4 cut(s)	314, 422, 758, 861
Eco32I	GATATC	1 cut(s)	968
Eco47I	GGWCC	1 cut(s)	707
Eco53kI	GAGCTC	1 cut(s)	859
Eco57I	CTGAAG	1 cut(s)	1110
EcoICRI	GAGCTC	1 cut(s)	859
EcoRII	CCWGG	1 cut(s)	398
EcoRV	GATATC	1 cut(s)	968
EcoT38I	GRGCYC	4 cut(s)	314, 422, 758, 861
FaeI	CATG	9 cut(s)	13, 350, 805, 884, 935, 974, 989, 1044, 1170
FaqI	GGGAC	1 cut(s)	693
FatI	CATG	9 cut(s)	9, 346, 801, 880, 931, 970, 985, 1040, 1166
FbaI	TGATCA	1 cut(s)	670
Fnu4HI	GCNGC	6 cut(s)	189, 579, 781, 870, 897, 1095
FokI	GGATG	4 cut(s)	368, 422, 641, 1085
FriOI	GRGCYC	4 cut(s)	314, 422, 758, 861
Fsp4HI	GCNGC	6 cut(s)	189, 579, 781, 870, 897, 1095
FspBI	CTAG	1 cut(s)	807
GlaI	GCGC	2 cut(s)	679, 825
GluI	GCNGC	6 cut(s)	189, 579, 781, 870, 897, 1095
GsaI	CCCAGC	1 cut(s)	1072
HaeII	RGCGCY	1 cut(s)	827
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	2 cut(s)	366, 385
HgaI	GACGC	1 cut(s)	772
HhaI	GCGC	2 cut(s)	680, 826
Hin1II	CATG	9 cut(s)	13, 350, 805, 884, 935, 974, 989, 1044, 1170
Hin6I	GCGC	2 cut(s)	678, 824
HinP1I	GCGC	2 cut(s)	678, 824
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HinfI	GANTC	5 cut(s)	158, 323, 395, 513, 1008
HpaII	CCGG	2 cut(s)	366, 385
HphI	GGTGA	4 cut(s)	34, 110, 201, 230
Hpy166II	GTNNAC	3 cut(s)	769, 1079, 1081
Hpy188I	TCNGA	8 cut(s)	169, 267, 344, 408, 591, 659, 753, 1141
Hpy188III	TCNNGA	5 cut(s)	431, 439, 691, 941, 971
Hpy8I	GTNNAC	3 cut(s)	769, 1079, 1081
HpyAV	CCTTC	2 cut(s)	847, 1062
HpyCH4III	ACNGT	1 cut(s)	813
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	7 cut(s)	9, 191, 284, 872, 899, 923, 1097
HpyF10VI	GCNNNNNNNGC	2 cut(s)	359, 780
HpyF3I	CTNAG	4 cut(s)	447, 848, 914, 1138
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	9 cut(s)	13, 350, 805, 884, 935, 974, 989, 1044, 1170
HspAI	GCGC	2 cut(s)	678, 824
Ksp22I	TGATCA	1 cut(s)	670
Kzo9I	GATC	3 cut(s)	670, 954, 1048
LmnI	GCTCC	3 cut(s)	87, 856, 864
Lsp1109I	GCAGC	5 cut(s)	175, 767, 856, 883, 1081
LweI	GCATC	1 cut(s)	215
MaeI	CTAG	1 cut(s)	807
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	2 cut(s)	465, 727
MalI	GATC	3 cut(s)	672, 956, 1050
MboI	GATC	3 cut(s)	670, 954, 1048
MboII	GAAGA	4 cut(s)	113, 220, 986, 1058
MflI	RGATCY	2 cut(s)	954, 1048
MhlI	GDGCHC	4 cut(s)	314, 422, 758, 861
MluCI	AATT	8 cut(s)	141, 163, 337, 355, 608, 661, 1118, 1162
MlyI	GAGTC	2 cut(s)	152, 317
MnlI	CCTC	7 cut(s)	27, 78, 89, 97, 362, 752, 872
MroXI	GAANNNNTTC	1 cut(s)	609
MseI	TTAA	2 cut(s)	636, 1121
MslI	CAYNNNNRTG	1 cut(s)	885
MspA1I	CMGCKG	2 cut(s)	242, 581
MspI	CCGG	2 cut(s)	366, 385
MspR9I	CCNGG	1 cut(s)	400
Mva1269I	GAATGC	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	2 cut(s)	359, 780
NdeII	GATC	3 cut(s)	670, 954, 1048
NlaIII	CATG	9 cut(s)	13, 350, 805, 884, 935, 974, 989, 1044, 1170
NlaIV	GGNNCC	2 cut(s)	352, 709
NmuCI	GTSAC	2 cut(s)	465, 727
NspI	RCATGY	2 cut(s)	13, 884
PagI	TCATGA	1 cut(s)	970
PciI	ACATGT	1 cut(s)	880
PctI	GAATGC	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	609
PfeI	GAWTC	3 cut(s)	395, 513, 1008
PkrI	GCNGC	6 cut(s)	190, 580, 782, 871, 898, 1096
PleI	GAGTC	2 cut(s)	152, 317
PpsI	GAGTC	2 cut(s)	152, 317
Ppu21I	YACGTR	1 cut(s)	470
PscI	ACATGT	1 cut(s)	880
PshBI	ATTAAT	1 cut(s)	1121
Psp124BI	GAGCTC	1 cut(s)	861
Psp6I	CCWGG	1 cut(s)	398
PspFI	CCCAGC	1 cut(s)	1068
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	2 cut(s)	352, 709
PspPI	GGNCC	1 cut(s)	707
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	2 cut(s)	954, 1048
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	2 cut(s)	472, 1080
RsaNI	GTAC	2 cut(s)	471, 1079
RseI	CAYNNNNRTG	1 cut(s)	885
SacI	GAGCTC	1 cut(s)	861
SaqAI	TTAA	2 cut(s)	636, 1121
SatI	GCNGC	6 cut(s)	189, 579, 781, 870, 897, 1095
Sau3AI	GATC	3 cut(s)	670, 954, 1048
Sau96I	GGNCC	1 cut(s)	707
SchI	GAGTC	2 cut(s)	152, 317
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	4 cut(s)	314, 422, 758, 861
SfaNI	GCATC	1 cut(s)	215
SfcI	CTRYAG	2 cut(s)	648, 1187
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	885
SmlI	CTYRAG	5 cut(s)	307, 329, 461, 827, 1023
SmoI	CTYRAG	5 cut(s)	307, 329, 461, 827, 1023
Sse9I	AATT	8 cut(s)	141, 163, 337, 355, 608, 661, 1118, 1162
SsiI	CCGC	2 cut(s)	579, 772
SspMI	CTAG	1 cut(s)	807
SstI	GAGCTC	1 cut(s)	861
StyD4I	CCNGG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	813
TaiI	ACGT	1 cut(s)	472
TasI	AATT	8 cut(s)	141, 163, 337, 355, 608, 661, 1118, 1162
TatI	WGTACW	1 cut(s)	1078
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	3 cut(s)	395, 513, 1008
Tru1I	TTAA	2 cut(s)	636, 1121
Tru9I	TTAA	2 cut(s)	636, 1121
TscAI	CASTG	5 cut(s)	178, 709, 732, 1093, 1132
TseFI	GTSAC	2 cut(s)	465, 727
TseI	GCWGC	5 cut(s)	188, 780, 869, 896, 1094
Tsp45I	GTSAC	2 cut(s)	465, 727
TspDTI	ATGAA	6 cut(s)	408, 618, 987, 1029, 1122, 1155
TspRI	CASTG	5 cut(s)	178, 709, 732, 1093, 1132
VpaK11BI	GGWCC	1 cut(s)	707
VspI	ATTAAT	1 cut(s)	1121
XapI	RAATTY	3 cut(s)	163, 661, 1162
XceI	RCATGY	2 cut(s)	13, 884
XcmI	CCANNNNNNNNNTGG	3 cut(s)	239, 718, 992
XmnI	GAANNNNTTC	1 cut(s)	609
XspI	CTAG	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.