Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0002827

Physical Location & Seq

Genomic Coordinates Forward (+)

1123206 .. 1124796

Gene Structure 1591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01860.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGAGTTTTGGAAACTGCTTCTGGCATCTGGGTTCTTCTTGGCTTTCCGGGTTTTGGCTGTGGGAGGCCAGAACTTACCACCCTGTTCTTTCCCGGCAATTTACAACTTCGGGGACTCGAATTCCGACACCGGCGGCATATCGGCCGCGTTCGAGCCAATCAAAGCTCCTTACGGCGAAGCATTCTTCCACAAGCCGGCCGGGAGGGACGCCGATGGCCGCCTTATCATAGACTTCTTAGCTGAGCGCCTGAAGTTGCCATACTTGAGTGCATATTTGAACTCACTCGGAACAAATTACCGGCACGGTGCAAATTTCGCCACCGGAGGATCCACCATCAGGCGGCCGAACGAAACCATTTTCCAGTACGGCATTAGCCCTTTCTCCCTCGATATGCAGACGGCGCAGTTCCTGCAGTTCAAAGCTCGCACTGCCGATCTCTATCGCCAAGCCAAGAACCCTTCTGAGAGAAGCGCTCTGCCAGATCCTCGGGAGTTCGCAGAGGCTCTGTACACCTTTGATATCGGGCAAAACGATCTTTCCATGGGGTTTCGGAAGCTCAGTTTCGACCAGTTTCGTGCAGAACTGCCGGACATTGTCAACCAGTTAGCCATAGCAGTCCATCGGATATATGAAGAAGGGGGGAGGACATTTTGGATACACAACACAGGTCCTGTTGGTTGCTTGCCGGTACAGTTATTCTACAACCTGAATCCGCCAGCCGGTTATCTCGACGACCATGGCTGCGTCAAGGCCCAAAACGACGTTGCCGTAGAGTTCAACACGCAGCTCAGAGACAGAGTCATCAAACTAAGAGCTGAGCTGCCACAAGCTGCAATCACATACGTCGATGTCTATGCCGCCAAGTACGGACTCATCGGCGCTGCAAAGACTGAAGGGTTTGCTGATCCGATGAAGGTTTGTTGCGGTTATCACGTGGGATACGACCACATCTGGTGCGGGAACAAGGGAAGCGTAAATGGAAGCGATGTCTACGGTGCTTCATGTCAAAACCCGTCGGCTTTTATTAGCTGGGATGGAGTTCACTACACCGAGGGAGCGAACCAGTGGGTTGCTAATCGTATACTCACTGGCTCGCCATCGTCAAACCCGGCAATTCCGATTACTCAAGCTTGTCATAGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

383

Amino Acids

42.17

Weight (kDa)

6.36

Isoelectric Point (pI)

28.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14450
fragaria_vesca	FvH4_6g51890 FvH4_6g51890 FvH4_6g51900 FvH4_6g51910 FvH4_6g51910 FvH4_6g51910
malus_domestica	MD09G1021800.v1.1 MD09G1021900.v1.1 MD09G1022200.v1.1 MD17G1021700.v1.1
prunus_persica	Prupe.3G294400_v2.0.a1 Prupe.3G294400_v2.0.a1 Prupe.3G294500_v2.0.a1 Prupe.3G294500_v2.0.a1
pyrus_communis	pycom111g01820 pycom111g01830 pycom111g01860 pycom17g01880
rosa_chinensis	RchiOBHm_Chr2g0173381 RchiOBHm_Chr2g0173391
rosa_laevigata	RLG00000022184 RLG00000022185
rosa_multiflora	Rmu_co8202706.1_g000001 Rmu_co8257229.1_g000001 Rmu_ssc0000282.1_g000010 Rmu_ssc0000282.1_g000011
rosa_roxburghii	Rroxscaffold_2G00078930 Rroxscaffold_2G00078940
rosa_rugosa	Rorug02G0567700 Rorug02G0567800
rosa_samantha	Rh2AG648300 Rh2AG648400 Rh2BG658900 Rh2BG659000 Rh2CG624200 Rh2CG624300
rosa_wichuraiana	Rw2G053210 Rw2G053220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	993, 1084
AccII	CGCG	1 cut(s)	149
AciI	CCGC	8 cut(s)	135, 147, 220, 343, 716, 861, 927, 960
AclWI	GGATC	4 cut(s)	324, 337, 479, 902
AcoI	YGGCCR	4 cut(s)	144, 198, 217, 344
AcsI	RAATTY	2 cut(s)	121, 313
AcuI	CTGAAG	2 cut(s)	272, 915
AcvI	CACGTG	1 cut(s)	937
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	4 cut(s)	368, 512, 693, 869
AfeI	AGCGCT	1 cut(s)	475
AfiI	CCNNNNNNNGG	5 cut(s)	55, 196, 339, 342, 722
AgsI	TTSAA	3 cut(s)	280, 421, 781
Alw26I	GTCTC	1 cut(s)	789
AlwI	GGATC	4 cut(s)	324, 337, 479, 902
AlwNI	CAGNNNCTG	2 cut(s)	412, 674
Ama87I	CYCGRG	1 cut(s)	489
Aor51HI	AGCGCT	1 cut(s)	475
AoxI	GGCC	6 cut(s)	67, 144, 198, 217, 344, 753
ApeKI	GCWGC	5 cut(s)	744, 787, 823, 833, 884
ApoI	RAATTY	2 cut(s)	121, 313
AspLEI	GCGC	4 cut(s)	249, 406, 476, 884
AspS9I	GGNCC	2 cut(s)	671, 754
AsuC2I	CCSGG	4 cut(s)	50, 95, 202, 1112
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	1 cut(s)	671
BamHI	GGATCC	1 cut(s)	329
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
BbrPI	CACGTG	1 cut(s)	937
BbvI	GCAGC	5 cut(s)	731, 799, 810, 820, 871
BccI	CCATC	5 cut(s)	209, 344, 630, 1031, 1108
BceAI	ACGGC	4 cut(s)	190, 385, 417, 755
BcgI	CGANNNNNNTGC	2 cut(s)	839, 873
BciVI	GTATCC	2 cut(s)	651, 935
BcnI	CCSGG	4 cut(s)	50, 95, 202, 1112
BcoDI	GTCTC	1 cut(s)	789
BfmI	CTRYAG	1 cut(s)	413
BfoI	RGCGCY	3 cut(s)	250, 477, 885
BfuI	GTATCC	2 cut(s)	651, 935
BlpI	GCTNAGC	2 cut(s)	243, 819
Bme1390I	CCNGG	4 cut(s)	50, 95, 202, 1112
Bme18I	GGWCC	1 cut(s)	671
BmeT110I	CYCGRG	1 cut(s)	489
BmgT120I	GGNCC	2 cut(s)	671, 754
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	4 cut(s)	50, 95, 202, 1112
BmsI	GCATC	1 cut(s)	35
BplI	GAGNNNNNCTC	2 cut(s)	460, 492
Bpu1102I	GCTNAGC	2 cut(s)	243, 819
BpuEI	CTTGAG	2 cut(s)	286, 1113
BpuMI	CCSGG	4 cut(s)	50, 95, 202, 1112
BsaAI	YACGTR	1 cut(s)	937
BsaBI	GATNNNNATC	1 cut(s)	441
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	4 cut(s)	488, 543, 739, 1053
BsaWI	WCCGGW	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 196, 339, 342, 722
Bse118I	RCCGGY	5 cut(s)	131, 196, 300, 688, 722
Bse1I	ACTGG	5 cut(s)	364, 571, 604, 1066, 1096
Bse8I	GATNNNNATC	1 cut(s)	441
BseDI	CCNNGG	4 cut(s)	488, 543, 739, 1053
BseGI	GGATG	1 cut(s)	1042
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	5 cut(s)	55, 196, 339, 342, 722
BseMII	CTCAG	5 cut(s)	234, 456, 574, 805, 810
BseNI	ACTGG	5 cut(s)	364, 571, 604, 1066, 1096
BseX3I	CGGCCG	3 cut(s)	144, 198, 344
BseXI	GCAGC	5 cut(s)	731, 799, 810, 820, 871
BseYI	CCCAGC	1 cut(s)	1032
BsgI	GTGCAG	1 cut(s)	600
Bsh1236I	CGCG	1 cut(s)	149
Bsh1285I	CGRYCG	3 cut(s)	147, 201, 347
BshFI	GGCC	6 cut(s)	69, 146, 200, 219, 346, 755
BsiEI	CGRYCG	3 cut(s)	147, 201, 347
BsiHKCI	CYCGRG	1 cut(s)	489
BslFI	GGGAC	2 cut(s)	128, 221
BslI	CCNNNNNNNGG	5 cut(s)	55, 196, 339, 342, 722
BsmAI	GTCTC	1 cut(s)	789
BsmFI	GGGAC	2 cut(s)	128, 221
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	6 cut(s)	69, 146, 200, 219, 346, 755
BsoBI	CYCGRG	1 cut(s)	489
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	5 cut(s)	329, 436, 484, 535, 907
Bsp1720I	GCTNAGC	2 cut(s)	243, 819
Bsp19I	CCATGG	2 cut(s)	543, 739
BspACI	CCGC	8 cut(s)	135, 147, 220, 343, 716, 861, 927, 960
BspANI	GGCC	6 cut(s)	69, 146, 200, 219, 346, 755
BspCNI	CTCAG	5 cut(s)	235, 457, 573, 804, 811
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	331
BspMAI	CTGCAG	1 cut(s)	417
BspPI	GGATC	4 cut(s)	324, 337, 479, 902
BsrFI	RCCGGY	5 cut(s)	131, 196, 300, 688, 722
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	5 cut(s)	364, 571, 604, 1066, 1096
BssAI	RCCGGY	5 cut(s)	131, 196, 300, 688, 722
BssECI	CCNNGG	4 cut(s)	488, 543, 739, 1053
BssMI	GATC	5 cut(s)	329, 436, 484, 535, 907
BssNAI	GTATAC	1 cut(s)	1085
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	2 cut(s)	543, 739
Bst1107I	GTATAC	1 cut(s)	1085
Bst4CI	ACNGT	3 cut(s)	308, 696, 998
BstACI	GRCGYC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstAUI	TGTACA	1 cut(s)	510
BstBAI	YACGTR	1 cut(s)	937
BstC8I	GCNNGC	5 cut(s)	198, 427, 686, 720, 1097
BstDEI	CTNAG	7 cut(s)	238, 243, 465, 560, 791, 812, 819
BstDSI	CCRYGG	2 cut(s)	543, 739
BstF5I	GGATG	1 cut(s)	1042
BstFNI	CGCG	1 cut(s)	149
BstH2I	RGCGCY	3 cut(s)	250, 477, 885
BstHHI	GCGC	4 cut(s)	249, 406, 476, 884
BstKTI	GATC	5 cut(s)	332, 439, 487, 538, 910
BstMAI	GTCTC	1 cut(s)	789
BstMBI	GATC	5 cut(s)	329, 436, 484, 535, 907
BstMCI	CGRYCG	3 cut(s)	147, 201, 347
BstMWI	GCNNNNNNNGC	4 cut(s)	317, 403, 412, 431
BstSCI	CCNGG	4 cut(s)	48, 93, 200, 1110
BstSFI	CTRYAG	1 cut(s)	413
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	5 cut(s)	731, 799, 810, 820, 871
BstX2I	RGATCY	2 cut(s)	329, 484
BstYI	RGATCY	2 cut(s)	329, 484
BstZ17I	GTATAC	1 cut(s)	1085
BstZI	CGGCCG	3 cut(s)	144, 198, 344
BsuI	GTATCC	2 cut(s)	651, 935
BsuRI	GGCC	6 cut(s)	69, 146, 200, 219, 346, 755
BtgI	CCRYGG	2 cut(s)	543, 739
BtgZI	GCGATG	1 cut(s)	1002
BtsCI	GGATG	1 cut(s)	1042
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	3 cut(s)	429, 1073, 1089
Cac8I	GCNNGC	5 cut(s)	198, 427, 686, 720, 1097
CaiI	CAGNNNCTG	2 cut(s)	412, 674
CfoI	GCGC	4 cut(s)	249, 406, 476, 884
Cfr10I	RCCGGY	5 cut(s)	131, 196, 300, 688, 722
Cfr13I	GGNCC	2 cut(s)	671, 754
CseI	GACGC	2 cut(s)	218, 736
Csp6I	GTAC	4 cut(s)	367, 511, 692, 868
CviAII	CATG	3 cut(s)	544, 740, 1005
CviQI	GTAC	4 cut(s)	367, 511, 692, 868
DdeI	CTNAG	7 cut(s)	238, 243, 465, 560, 791, 812, 819
DpnI	GATC	5 cut(s)	331, 438, 486, 537, 909
DpnII	GATC	5 cut(s)	329, 436, 484, 535, 907
EaeI	YGGCCR	4 cut(s)	144, 198, 217, 344
EagI	CGGCCG	3 cut(s)	144, 198, 344
EciI	GGCGGA	1 cut(s)	705
EclXI	CGGCCG	3 cut(s)	144, 198, 344
Eco130I	CCWWGG	2 cut(s)	543, 739
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	671
Eco47III	AGCGCT	1 cut(s)	475
Eco52I	CGGCCG	3 cut(s)	144, 198, 344
Eco57I	CTGAAG	2 cut(s)	272, 915
Eco72I	CACGTG	1 cut(s)	937
Eco88I	CYCGRG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	671
EcoRI	GAATTC	1 cut(s)	121
EcoRV	GATATC	1 cut(s)	523
EcoT14I	CCWWGG	2 cut(s)	543, 739
ErhI	CCWWGG	2 cut(s)	543, 739
FaeI	CATG	3 cut(s)	547, 743, 1008
FaqI	GGGAC	2 cut(s)	128, 221
FatI	CATG	3 cut(s)	543, 739, 1004
FauI	CCCGC	1 cut(s)	953
FblI	GTMKAC	2 cut(s)	993, 1084
FokI	GGATG	1 cut(s)	1049
GlaI	GCGC	4 cut(s)	248, 405, 475, 883
GsaI	CCCAGC	1 cut(s)	1036
HaeII	RGCGCY	3 cut(s)	250, 477, 885
HaeIII	GGCC	6 cut(s)	69, 146, 200, 219, 346, 755
HgaI	GACGC	2 cut(s)	218, 736
HhaI	GCGC	4 cut(s)	249, 406, 476, 884
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	3 cut(s)	547, 743, 1008
Hin6I	GCGC	4 cut(s)	247, 404, 474, 882
HinP1I	GCGC	4 cut(s)	247, 404, 474, 882
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	1131
HinfI	GANTC	4 cut(s)	116, 712, 801, 873
Hpy166II	GTNNAC	5 cut(s)	513, 601, 994, 1045, 1085
Hpy188I	TCNGA	8 cut(s)	127, 290, 466, 555, 627, 794, 912, 1122
Hpy188III	TCNNGA	2 cut(s)	491, 731
Hpy8I	GTNNAC	5 cut(s)	513, 601, 994, 1045, 1085
Hpy99I	CGWCG	4 cut(s)	737, 767, 851, 1021
HpyAV	CCTTC	4 cut(s)	471, 632, 890, 910
HpyCH4III	ACNGT	3 cut(s)	308, 696, 998
HpyCH4IV	ACGT	3 cut(s)	765, 846, 936
HpyCH4V	TGCA	7 cut(s)	272, 311, 397, 415, 581, 836, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	317, 403, 412, 431
HpyF3I	CTNAG	7 cut(s)	238, 243, 465, 560, 791, 812, 819
HpySE526I	ACGT	3 cut(s)	765, 846, 936
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	547, 743, 1008
HspAI	GCGC	4 cut(s)	247, 404, 474, 882
KroI	GCCGGC	1 cut(s)	196
KroNI	GCCGGC	1 cut(s)	198
Kzo9I	GATC	5 cut(s)	329, 436, 484, 535, 907
LmnI	GCTCC	2 cut(s)	172, 1058
Lsp1109I	GCAGC	5 cut(s)	731, 799, 810, 820, 871
LweI	GCATC	1 cut(s)	35
MaeII	ACGT	3 cut(s)	765, 846, 936
MalI	GATC	5 cut(s)	331, 438, 486, 537, 909
MboI	GATC	5 cut(s)	329, 436, 484, 535, 907
MboII	GAAGA	3 cut(s)	28, 178, 647
MflI	RGATCY	2 cut(s)	329, 484
MluCI	AATT	5 cut(s)	99, 121, 295, 313, 1116
MlyI	GAGTC	3 cut(s)	110, 810, 867
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	8 cut(s)	59, 198, 320, 398, 496, 498, 639, 1048
MroNI	GCCGGC	1 cut(s)	196
MspR9I	CCNGG	4 cut(s)	50, 95, 202, 1112
Mva1269I	GAATGC	1 cut(s)	182
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	4 cut(s)	317, 403, 412, 431
NaeI	GCCGGC	1 cut(s)	198
NciI	CCSGG	4 cut(s)	50, 95, 202, 1112
NcoI	CCATGG	2 cut(s)	543, 739
NdeII	GATC	5 cut(s)	329, 436, 484, 535, 907
NgoMIV	GCCGGC	1 cut(s)	196
NlaIII	CATG	3 cut(s)	547, 743, 1008
NlaIV	GGNNCC	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	3 cut(s)	531, 768, 942
PctI	GAATGC	1 cut(s)	182
PdiI	GCCGGC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	712
PflFI	GACNNNGTC	2 cut(s)	596, 800
PleI	GAGTC	3 cut(s)	110, 809, 867
PmaCI	CACGTG	1 cut(s)	937
PmlI	CACGTG	1 cut(s)	937
PpsI	GAGTC	3 cut(s)	110, 809, 867
Ppu21I	YACGTR	1 cut(s)	937
PpuMI	RGGWCCY	1 cut(s)	671
Psp5II	RGGWCCY	1 cut(s)	671
PspCI	CACGTG	1 cut(s)	937
PspFI	CCCAGC	1 cut(s)	1032
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	2 cut(s)	671, 754
PspPPI	RGGWCCY	1 cut(s)	671
PstI	CTGCAG	1 cut(s)	417
PstNI	CAGNNNCTG	2 cut(s)	412, 674
PsuI	RGATCY	2 cut(s)	329, 484
PsyI	GACNNNGTC	2 cut(s)	596, 800
RsaI	GTAC	4 cut(s)	368, 512, 693, 869
RsaNI	GTAC	4 cut(s)	367, 511, 692, 868
Sau3AI	GATC	5 cut(s)	329, 436, 484, 535, 907
Sau96I	GGNCC	2 cut(s)	671, 754
SchI	GAGTC	3 cut(s)	110, 810, 867
ScrFI	CCNGG	4 cut(s)	50, 95, 202, 1112
SfaNI	GCATC	1 cut(s)	35
SfcI	CTRYAG	1 cut(s)	413
SgrAI	CRCCGGYG	1 cut(s)	131
SinI	GGWCC	1 cut(s)	671
SmlI	CTYRAG	2 cut(s)	265, 1128
SmoI	CTYRAG	2 cut(s)	265, 1128
Sse9I	AATT	5 cut(s)	99, 121, 295, 313, 1116
SsiI	CCGC	8 cut(s)	135, 147, 220, 343, 716, 861, 927, 960
StyD4I	CCNGG	4 cut(s)	48, 93, 200, 1110
StyI	CCWWGG	2 cut(s)	543, 739
TaaI	ACNGT	3 cut(s)	308, 696, 998
TaiI	ACGT	3 cut(s)	768, 849, 939
TaqI	TCGA	6 cut(s)	119, 153, 390, 567, 732, 849
TasI	AATT	5 cut(s)	99, 121, 295, 313, 1116
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	5 cut(s)	138, 149, 222, 346, 863
TfiI	GAWTC	1 cut(s)	712
TscAI	CASTG	3 cut(s)	436, 1073, 1096
TseI	GCWGC	5 cut(s)	744, 787, 823, 833, 884
TspDTI	ATGAA	3 cut(s)	648, 929, 993
TspGWI	ACGGA	1 cut(s)	885
TspRI	CASTG	3 cut(s)	436, 1073, 1096
Tth111I	GACNNNGTC	2 cut(s)	596, 800
VpaK11BI	GGWCC	1 cut(s)	671
XapI	RAATTY	2 cut(s)	121, 313
XmiI	GTMKAC	2 cut(s)	993, 1084

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.