pycom17g01880

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
1190306 .. 1192385
2080 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g01880.2

Sequence Viewer

Length: 1188 bp
ATGAACTTATGTACGGTACACACTGACCCTTTAAGACACGAGATGGGAGGCCAGAACTTACCACCCTGTTCTTTTCCGGCAATTTACAACTTCGGGGACTCAAATTCCGACACCGGCGGCATATCCGCTGCATTTGAGCCAATCAAACCTCCTAACGGCGAAGCATTCTTCCATAAGCCGGCCGGGAGGGCCGCCGATGGCCGCCTTGTCATAGACTTCATAGCTGCCGTACTTGAGTGCATATTTGAACTCACTTGGAACAAATTGCACGGTGCGAATTTCGCCACCGGCGGATCCACCGTCAGAAGGCCGAACGAAACCATCTTTGAGAACGGCATTAGTCCTTTCTCCCTCGACATGCAGACGGCGCAATTCCTGCAGTTCAAGGCCCGCACCGCCGATCTCTACCGCCAAGCCAAGAACCCTTCTCAGAGAAGCGCTCTGCCGAATCCTCAAGATTTCGCAAAGGCTCTCTACACGTTTGATATCGGGCAAAATGATCTATCCGCGGGTTTTCGGAAGCTAAGTTTCGACCAGCTACGTGCACAGCTGCCGGACATTGTCAACCAGTTAGCCATAGCAGTCCATCGGATATATGAAGAAGGAGGGAGGACATTTTGGATACACAACACAGGTCCTGTTGGTTGCTTGCCTATACAGTTATTCTACAATCTGAATCCGCCGCGCGGTTTTCTCGACGACCACGGCTGCGTCAAGGCCCAAAACGACATCGCCGTAGAGTTCAACAGGCAGCTAAGGGACAGAGTCACCAAACTCAGAGCCGAGCTCCCACAAGCTGCGATCACATATGTCGATGTCTTTGCCGCCAAGTATGGACTCATCGGCACGGCAAACACCGAAGGTACCCAATTTCTTCAACTTCATTACCACAAATTATCTTGTTCGATACCGATCAACGTTACAATTTTGTTTACAGGATTTGCCGAACCAATGAAGGTTTGCTGCGGGTATCATGTGAAATACGACCATGTCTGGTGCGGGAATAAAGGAAGTGCGAGCGGAAGGGAAGTGTACGGTGCTTCATGTCAAAACCCGTCGGCTTTTATCAGCTGGGATGGAATTCACTACACTCAGGGTGCGAACCAGTGGGTTGCTAATCGTATACTCAATGGCTCGCCTTCGTCAATCCCGGCAATTCCGATTACTAAGGCTTGTCATAGGCATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

396

Amino Acids

43.65

Weight (kDa)

7.99

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 863
AccB1I GGYRCC 1 cut(s) 863
AccBSI CCGCTC 1 cut(s) 1020
AccI GTMKAC 1 cut(s) 1123
AccII CGCG 3 cut(s) 509, 685, 687
AclI AACGTT 1 cut(s) 918
AclWI GGATC 2 cut(s) 288, 301
AcoI YGGCCR 2 cut(s) 180, 199
AcsI RAATTY 3 cut(s) 103, 277, 1080
AfaI GTAC 5 cut(s) 13, 18, 231, 865, 1034
AfeI AGCGCT 1 cut(s) 439
AfiI CCNNNNNNNGG 4 cut(s) 155, 178, 306, 686
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 4 cut(s) 248, 385, 745, 878
AluBI AGCT 8 cut(s) 224, 523, 538, 550, 754, 787, 797, 1071
AluI AGCT 8 cut(s) 224, 523, 538, 550, 754, 787, 797, 1071
Alw21I GWGCWC 2 cut(s) 547, 789
Alw44I GTGCAC 1 cut(s) 543
AlwI GGATC 2 cut(s) 288, 301
AlwNI CAGNNNCTG 1 cut(s) 638
Aor51HI AGCGCT 1 cut(s) 439
AoxI GGCC 7 cut(s) 49, 180, 189, 199, 308, 387, 717
ApaLI GTGCAC 1 cut(s) 543
ApeKI GCWGC 7 cut(s) 128, 224, 550, 708, 751, 797, 963
ApoI RAATTY 3 cut(s) 103, 277, 1080
Asp718I GGTACC 1 cut(s) 863
AspLEI GCGC 3 cut(s) 370, 440, 687
AspS9I GGNCC 4 cut(s) 189, 388, 635, 718
AsuC2I CCSGG 2 cut(s) 184, 1151
AsuHPI GGTGA 1 cut(s) 760
AvaII GGWCC 1 cut(s) 635
BaeGI GKGCMC 1 cut(s) 547
BamHI GGATCC 1 cut(s) 293
BanI GGYRCC 1 cut(s) 863
BanII GRGCYC 1 cut(s) 789
BauI CACGAG 1 cut(s) 38
Bbv12I GWGCWC 2 cut(s) 547, 789
BbvI GCAGC 7 cut(s) 115, 211, 537, 695, 763, 784, 950
BccI CCATC 5 cut(s) 37, 191, 329, 594, 1070
BceAI ACGGC 7 cut(s) 172, 212, 349, 381, 719, 721, 864
BcgI CGANNNNNNTGC 2 cut(s) 803, 837
BciVI GTATCC 1 cut(s) 615
BcnI CCSGG 2 cut(s) 184, 1151
BfmI CTRYAG 1 cut(s) 377
BfoI RGCGCY 1 cut(s) 441
BfuI GTATCC 1 cut(s) 615
BglI GCCNNNNNGGC 1 cut(s) 188
Bme1390I CCNGG 2 cut(s) 184, 1151
Bme18I GGWCC 1 cut(s) 635
BmgT120I GGNCC 4 cut(s) 189, 388, 635, 718
BmiI GGNNCC 2 cut(s) 295, 865
BmrFI CCNGG 2 cut(s) 184, 1151
BplI GAGNNNNNCTC 4 cut(s) 424, 456, 771, 803
Bpu10I CCTNAGC 1 cut(s) 755
BpuEI CTTGAG 2 cut(s) 254, 438
BpuMI CCSGG 2 cut(s) 184, 1151
BsaAI YACGTR 1 cut(s) 542
BsaBI GATNNNNATC 1 cut(s) 911
BsaJI CCNNGG 2 cut(s) 507, 703
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 178, 306, 686
Bse118I RCCGGY 3 cut(s) 113, 178, 287
Bse1I ACTGG 2 cut(s) 568, 1105
Bse8I GATNNNNATC 1 cut(s) 911
BseDI CCNNGG 2 cut(s) 507, 703
BseGI GGATG 1 cut(s) 1081
BseJI GATNNNNATC 1 cut(s) 911
BseLI CCNNNNNNNGG 4 cut(s) 155, 178, 306, 686
BseMII CTCAG 3 cut(s) 443, 790, 1106
BseNI ACTGG 2 cut(s) 568, 1105
BseSI GKGCMC 1 cut(s) 547
BseX3I CGGCCG 1 cut(s) 180
BseXI GCAGC 7 cut(s) 115, 211, 537, 695, 763, 784, 950
BseYI CCCAGC 1 cut(s) 1071
Bsh1236I CGCG 3 cut(s) 509, 685, 687
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 7 cut(s) 51, 182, 191, 201, 310, 389, 719
BshNI GGYRCC 1 cut(s) 863
BsiEI CGRYCG 1 cut(s) 183
BsiHKAI GWGCWC 2 cut(s) 547, 789
BsiSI CCGG 7 cut(s) 77, 114, 179, 183, 288, 554, 1151
BslFI GGGAC 2 cut(s) 110, 773
BslI CCNNNNNNNGG 4 cut(s) 155, 178, 306, 686
BsmFI GGGAC 2 cut(s) 110, 773
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 7 cut(s) 51, 182, 191, 201, 310, 389, 719
Bsp1286I GDGCHC 2 cut(s) 547, 789
Bsp143I GATC 5 cut(s) 293, 400, 499, 801, 912
BspANI GGCC 7 cut(s) 51, 182, 191, 201, 310, 389, 719
BspCNI CTCAG 3 cut(s) 442, 789, 1105
BspFNI CGCG 3 cut(s) 509, 685, 687
BspLI GGNNCC 2 cut(s) 295, 865
BspMAI CTGCAG 1 cut(s) 381
BspPI GGATC 2 cut(s) 288, 301
BspT107I GGYRCC 1 cut(s) 863
BsrBI CCGCTC 1 cut(s) 1020
BsrFI RCCGGY 3 cut(s) 113, 178, 287
BsrI ACTGG 2 cut(s) 568, 1105
BssAI RCCGGY 3 cut(s) 113, 178, 287
BssECI CCNNGG 2 cut(s) 507, 703
BssMI GATC 5 cut(s) 293, 400, 499, 801, 912
BssNAI GTATAC 1 cut(s) 1124
BssSI CACGAG 1 cut(s) 38
Bst1107I GTATAC 1 cut(s) 1124
Bst2BI CACGAG 1 cut(s) 38
Bst4CI ACNGT 5 cut(s) 16, 272, 301, 660, 1037
BstAPI GCANNNNNTGC 1 cut(s) 376
BstBAI YACGTR 1 cut(s) 542
BstC8I GCNNGC 5 cut(s) 180, 391, 650, 1018, 1136
BstDEI CTNAG 6 cut(s) 429, 524, 755, 776, 1092, 1167
BstDSI CCRYGG 2 cut(s) 507, 703
BstF5I GGATG 1 cut(s) 1081
BstFNI CGCG 3 cut(s) 509, 685, 687
BstH2I RGCGCY 1 cut(s) 441
BstHHI GCGC 3 cut(s) 370, 440, 687
BstKTI GATC 5 cut(s) 296, 403, 502, 804, 915
BstMBI GATC 5 cut(s) 293, 400, 499, 801, 912
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 5 cut(s) 188, 281, 367, 376, 395
BstNSI RCATGY 1 cut(s) 361
BstSCI CCNGG 2 cut(s) 182, 1149
BstSFI CTRYAG 1 cut(s) 377
BstSLI GKGCMC 1 cut(s) 547
BstUI CGCG 3 cut(s) 509, 685, 687
BstV1I GCAGC 7 cut(s) 115, 211, 537, 695, 763, 784, 950
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BstZ17I GTATAC 1 cut(s) 1124
BstZI CGGCCG 1 cut(s) 180
BsuI GTATCC 1 cut(s) 615
BsuRI GGCC 7 cut(s) 51, 182, 191, 201, 310, 389, 719
BtgI CCRYGG 2 cut(s) 507, 703
BtgZI GCGATG 1 cut(s) 715
BtsCI GGATG 1 cut(s) 1081
BtsIMutI CAGTG 2 cut(s) 21, 1112
Cac8I GCNNGC 5 cut(s) 180, 391, 650, 1018, 1136
CaiI CAGNNNCTG 1 cut(s) 638
CfoI GCGC 3 cut(s) 370, 440, 687
Cfr10I RCCGGY 3 cut(s) 113, 178, 287
Cfr13I GGNCC 4 cut(s) 189, 388, 635, 718
Cfr42I CCGCGG 1 cut(s) 510
CseI GACGC 1 cut(s) 700
Csp6I GTAC 5 cut(s) 12, 17, 230, 864, 1033
CviAII CATG 4 cut(s) 358, 974, 989, 1044
CviQI GTAC 5 cut(s) 12, 17, 230, 864, 1033
DdeI CTNAG 6 cut(s) 429, 524, 755, 776, 1092, 1167
DpnI GATC 5 cut(s) 295, 402, 501, 803, 914
DpnII GATC 5 cut(s) 293, 400, 499, 801, 912
EaeI YGGCCR 2 cut(s) 180, 199
EagI CGGCCG 1 cut(s) 180
EciI GGCGGA 2 cut(s) 306, 669
Ecl136II GAGCTC 1 cut(s) 787
EclXI CGGCCG 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 789
Eco32I GATATC 1 cut(s) 487
Eco47I GGWCC 1 cut(s) 635
Eco47III AGCGCT 1 cut(s) 439
Eco52I CGGCCG 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 787
EcoICRI GAGCTC 1 cut(s) 787
EcoO109I RGGNCCY 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 1080
EcoRV GATATC 1 cut(s) 487
EcoT38I GRGCYC 1 cut(s) 789
FaeI CATG 4 cut(s) 361, 977, 992, 1047
FaqI GGGAC 2 cut(s) 110, 773
FatI CATG 4 cut(s) 357, 973, 988, 1043
FauI CCCGC 4 cut(s) 398, 502, 959, 992
FauNDI CATATG 1 cut(s) 808
FblI GTMKAC 1 cut(s) 1123
FokI GGATG 1 cut(s) 1088
FriOI GRGCYC 1 cut(s) 789
GlaI GCGC 3 cut(s) 369, 439, 686
GsaI CCCAGC 1 cut(s) 1075
HaeII RGCGCY 1 cut(s) 441
HaeIII GGCC 7 cut(s) 51, 182, 191, 201, 310, 389, 719
HapII CCGG 7 cut(s) 77, 114, 179, 183, 288, 554, 1151
HgaI GACGC 1 cut(s) 700
HhaI GCGC 3 cut(s) 370, 440, 687
Hin1II CATG 4 cut(s) 361, 977, 992, 1047
Hin6I GCGC 3 cut(s) 368, 438, 685
HinP1I GCGC 3 cut(s) 368, 438, 685
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 5 cut(s) 98, 448, 676, 765, 837
HpaII CCGG 7 cut(s) 77, 114, 179, 183, 288, 554, 1151
HphI GGTGA 1 cut(s) 760
Hpy166II GTNNAC 6 cut(s) 19, 545, 565, 933, 1033, 1124
Hpy188I TCNGA 8 cut(s) 109, 305, 432, 519, 591, 675, 779, 1161
Hpy188III TCNNGA 2 cut(s) 455, 695
Hpy8I GTNNAC 6 cut(s) 19, 545, 565, 933, 1033, 1124
Hpy99I CGWCG 2 cut(s) 701, 1060
HpyAV CCTTC 7 cut(s) 300, 435, 596, 854, 949, 1017, 1149
HpyCH4III ACNGT 5 cut(s) 16, 272, 301, 660, 1037
HpyCH4IV ACGT 3 cut(s) 479, 541, 918
HpyCH4V TGCA 6 cut(s) 131, 240, 268, 361, 379, 545
HpyF10VI GCNNNNNNNGC 5 cut(s) 188, 281, 367, 376, 395
HpyF3I CTNAG 6 cut(s) 429, 524, 755, 776, 1092, 1167
HpySE526I ACGT 3 cut(s) 479, 541, 918
Hsp92II CATG 4 cut(s) 361, 977, 992, 1047
HspAI GCGC 3 cut(s) 368, 438, 685
KpnI GGTACC 1 cut(s) 867
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
KspI CCGCGG 1 cut(s) 510
Kzo9I GATC 5 cut(s) 293, 400, 499, 801, 912
LmnI GCTCC 1 cut(s) 792
Lsp1109I GCAGC 7 cut(s) 115, 211, 537, 695, 763, 784, 950
MaeII ACGT 3 cut(s) 479, 541, 918
MaeIII GTNAC 2 cut(s) 766, 919
MalI GATC 5 cut(s) 295, 402, 501, 803, 914
MbiI CCGCTC 1 cut(s) 1020
MboI GATC 5 cut(s) 293, 400, 499, 801, 912
MboII GAAGA 3 cut(s) 160, 611, 866
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 2 cut(s) 547, 789
MlyI GAGTC 3 cut(s) 92, 774, 831
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 7 cut(s) 41, 159, 180, 362, 462, 599, 603
MroNI GCCGGC 1 cut(s) 178
MseI TTAA 1 cut(s) 32
MspA1I CMGCKG 4 cut(s) 128, 509, 550, 1071
MspI CCGG 7 cut(s) 77, 114, 179, 183, 288, 554, 1151
MspR9I CCNGG 2 cut(s) 184, 1151
Mva1269I GAATGC 1 cut(s) 164
MvnI CGCG 3 cut(s) 509, 685, 687
MwoI GCNNNNNNNGC 5 cut(s) 188, 281, 367, 376, 395
NaeI GCCGGC 1 cut(s) 180
NciI CCSGG 2 cut(s) 184, 1151
NdeI CATATG 1 cut(s) 808
NdeII GATC 5 cut(s) 293, 400, 499, 801, 912
NgoMIV GCCGGC 1 cut(s) 178
NlaIII CATG 4 cut(s) 361, 977, 992, 1047
NlaIV GGNNCC 2 cut(s) 295, 865
NmeAIII GCCGAG 1 cut(s) 808
NmuCI GTSAC 1 cut(s) 766
NspI RCATGY 1 cut(s) 361
PcsI WCGNNNNNNNCGW 1 cut(s) 732
PctI GAATGC 1 cut(s) 164
PdiI GCCGGC 1 cut(s) 180
PfeI GAWTC 2 cut(s) 448, 676
PflFI GACNNNGTC 3 cut(s) 560, 764, 989
PleI GAGTC 3 cut(s) 92, 773, 831
PpsI GAGTC 3 cut(s) 92, 773, 831
Ppu21I YACGTR 1 cut(s) 542
PpuMI RGGWCCY 1 cut(s) 635
Psp124BI GAGCTC 1 cut(s) 789
Psp1406I AACGTT 1 cut(s) 918
Psp5II RGGWCCY 1 cut(s) 635
PspFI CCCAGC 1 cut(s) 1071
PspN4I GGNNCC 2 cut(s) 295, 865
PspPI GGNCC 4 cut(s) 189, 388, 635, 718
PspPPI RGGWCCY 1 cut(s) 635
PstI CTGCAG 1 cut(s) 381
PstNI CAGNNNCTG 1 cut(s) 638
PsuI RGATCY 1 cut(s) 293
PsyI GACNNNGTC 3 cut(s) 560, 764, 989
PvuII CAGCTG 2 cut(s) 550, 1071
RsaI GTAC 5 cut(s) 13, 18, 231, 865, 1034
RsaNI GTAC 5 cut(s) 12, 17, 230, 864, 1033
SacI GAGCTC 1 cut(s) 789
SacII CCGCGG 1 cut(s) 510
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 5 cut(s) 293, 400, 499, 801, 912
Sau96I GGNCC 4 cut(s) 189, 388, 635, 718
SchI GAGTC 3 cut(s) 92, 774, 831
ScrFI CCNGG 2 cut(s) 184, 1151
SduI GDGCHC 2 cut(s) 547, 789
SfcI CTRYAG 1 cut(s) 377
SfiI GGCCNNNNNGGCC 1 cut(s) 188
Sfr303I CCGCGG 1 cut(s) 510
SgrAI CRCCGGYG 2 cut(s) 113, 287
SgrBI CCGCGG 1 cut(s) 510
SinI GGWCC 1 cut(s) 635
SmlI CTYRAG 2 cut(s) 233, 453
SmoI CTYRAG 2 cut(s) 233, 453
SstI GAGCTC 1 cut(s) 789
StyD4I CCNGG 2 cut(s) 182, 1149
TaaI ACNGT 5 cut(s) 16, 272, 301, 660, 1037
TaiI ACGT 3 cut(s) 482, 544, 921
TaqI TCGA 5 cut(s) 354, 531, 696, 813, 905
TauI GCSGC 5 cut(s) 120, 194, 204, 685, 827
TfiI GAWTC 2 cut(s) 448, 676
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 2 cut(s) 28, 1112
TseFI GTSAC 1 cut(s) 766
TseI GCWGC 7 cut(s) 128, 224, 550, 708, 751, 797, 963
Tsp45I GTSAC 1 cut(s) 766
TspDTI ATGAA 6 cut(s) 17, 208, 612, 872, 968, 1032
TspRI CASTG 2 cut(s) 28, 1112
Tth111I GACNNNGTC 3 cut(s) 560, 764, 989
VneI GTGCAC 1 cut(s) 543
VpaK11BI GGWCC 1 cut(s) 635
XapI RAATTY 3 cut(s) 103, 277, 1080
XceI RCATGY 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.