Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000282.1

Orthogroup ID

OG0002827

Physical Location & Seq

Genomic Coordinates Reverse (-)

59944 .. 61670

Gene Structure 1727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000282.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atggagatggaaagatttttggttgtgagcattttggtaacatgtgtgctagtaatcagtgtgggaggtaaagaagatgcatcgtctccttcggcttcagtttcggcttgtcagtttccagcaatctataactttggagactcgaattcagataccggtggtatatccgctgcattctacgcaatggcatcaccctacggtgaaactttcttccacagaccagctggaagggccagtgatggtcgactgataatagattttatagccgagaagctggggttgccatacctgagttcatatttggactcaattcggagcaacttccgacacggtgccaattttgcttcaggaggagcaaccatcaggcggcagaatgagtcatggtttgagaatggtctaaggatctttctgacatacaagatctacccagagcagaagacttctcaaaggctctttacacaaccagctggaagggccagtgatggtcgactgataatagattttatagccgagaagctggggttgccatacctgagttcatatttggactcaattcggagcaatttccgacacggtgccaattttgcttcaggaggagcaaccatcaggcggcagaatgagtcatggtttgagaatggtgtgagtccttttccccttgacatccagtttgtgcaatatgatcagttcaaggcgcgtaccaccactctttacaaccaagctaaggatctttctgacatacaagatctacccagagcagaagacttctcaaaggctctttacacattcgatataggccaaaatgatctagctgctggttttcggaaaatgagtaccgagcaatttctagcagaaattccagacattgttaaccagttggccacagccatccgaagtttgtatgaccgaggggcaagggcattctggatacacaacactggtccaataggttgcttgggagtgacattacactacatccatgacccgagccctcccggataccttgatcgccacggttgcgtgaagtttcaaaaccacatggcgagacagttcaataggctgctcaaacagaaagtgatccaactaaggaaggaactccctctttctgcaataacttatgtcaatgtctttgctgctaagtataagctcatcagcaatgcaaagaagcttggtaagaatagcttatgctcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

396

Amino Acids

44.24

Weight (kDa)

9.13

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14450
fragaria_vesca	FvH4_6g51890 FvH4_6g51890 FvH4_6g51900 FvH4_6g51910 FvH4_6g51910 FvH4_6g51910
malus_domestica	MD09G1021800.v1.1 MD09G1021900.v1.1 MD09G1022200.v1.1 MD17G1021700.v1.1
prunus_persica	Prupe.3G294400_v2.0.a1 Prupe.3G294400_v2.0.a1 Prupe.3G294500_v2.0.a1 Prupe.3G294500_v2.0.a1
pyrus_communis	pycom111g01820 pycom111g01830 pycom111g01860 pycom17g01880
rosa_chinensis	RchiOBHm_Chr2g0173381 RchiOBHm_Chr2g0173391
rosa_laevigata	RLG00000022184 RLG00000022185
rosa_multiflora	Rmu_co8202706.1_g000001 Rmu_co8257229.1_g000001 Rmu_ssc0000282.1_g000010 Rmu_ssc0000282.1_g000011
rosa_roxburghii	Rroxscaffold_2G00078930 Rroxscaffold_2G00078940
rosa_rugosa	Rorug02G0567700 Rorug02G0567800
rosa_samantha	Rh2AG648300 Rh2AG648400 Rh2BG658900 Rh2BG659000 Rh2CG624200 Rh2CG624300
rosa_wichuraiana	Rw2G053210 Rw2G053220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	332, 575
AccI	GTMKAC	2 cut(s)	244, 487
AccII	CGCG	1 cut(s)	694
AciI	CCGC	3 cut(s)	168, 367, 610
AclWI	GGATC	3 cut(s)	410, 732, 1069
AcoI	YGGCCR	1 cut(s)	876
AcsI	RAATTY	2 cut(s)	145, 852
AcuI	CTGAAG	3 cut(s)	81, 330, 573
AfaI	GTAC	2 cut(s)	697, 832
AfiI	CCNNNNNNNGG	3 cut(s)	366, 609, 721
AflIII	ACRYGT	1 cut(s)	41
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	688, 1028, 1051
AluBI	AGCT	9 cut(s)	224, 274, 467, 517, 719, 809, 1144, 1165, 1179
AluI	AGCT	9 cut(s)	224, 274, 467, 517, 719, 809, 1144, 1165, 1179
Alw26I	GTCTC	3 cut(s)	90, 132, 1036
AlwI	GGATC	3 cut(s)	410, 732, 1069
Ama87I	CYCGRG	1 cut(s)	982
AoxI	GGCC	4 cut(s)	231, 474, 793, 876
ApeKI	GCWGC	4 cut(s)	170, 809, 1057, 1130
ApoI	RAATTY	2 cut(s)	145, 852
ArsI	GACNNNNNNTTYG	2 cut(s)	650, 682
AsiGI	ACCGGT	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	694
AspS9I	GGNCC	3 cut(s)	231, 474, 938
AsuC2I	CCSGG	1 cut(s)	993
AsuHPI	GGTGA	2 cut(s)	183, 212
AvaI	CYCGRG	1 cut(s)	982
AvaII	GGWCC	1 cut(s)	938
BalI	TGGCCA	1 cut(s)	878
BanI	GGYRCC	2 cut(s)	332, 575
BanII	GRGCYC	1 cut(s)	989
BbsI	GAAGAC	2 cut(s)	443, 765
BbvI	GCAGC	4 cut(s)	157, 796, 1044, 1117
BccI	CCATC	5 cut(s)	233, 368, 476, 611, 893
BciVI	GTATCC	2 cut(s)	918, 989
BclI	TGATCA	1 cut(s)	679
BcnI	CCSGG	1 cut(s)	993
BcoDI	GTCTC	3 cut(s)	90, 132, 1036
BfaI	CTAG	3 cut(s)	50, 806, 845
BfuI	GTATCC	2 cut(s)	918, 989
BglII	AGATCT	2 cut(s)	420, 742
BisI	GCNGC	6 cut(s)	171, 368, 611, 810, 1058, 1131
BlsI	GCNGC	6 cut(s)	172, 369, 612, 811, 1059, 1132
Bme1390I	CCNGG	1 cut(s)	993
Bme18I	GGWCC	1 cut(s)	938
BmeT110I	CYCGRG	1 cut(s)	982
BmgT120I	GGNCC	3 cut(s)	231, 474, 938
BmiI	GGNNCC	2 cut(s)	334, 577
BmrFI	CCNGG	1 cut(s)	993
BmsI	GCATC	3 cut(s)	67, 89, 197
BpiI	GAAGAC	2 cut(s)	443, 765
Bpu10I	CCTNAGC	1 cut(s)	720
BpuMI	CCSGG	1 cut(s)	993
BsaJI	CCNNGG	2 cut(s)	904, 1009
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	3 cut(s)	366, 609, 721
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	5 cut(s)	234, 477, 664, 871, 940
Bse3DI	GCAATG	2 cut(s)	189, 1159
BseDI	CCNNGG	2 cut(s)	904, 1009
BseGI	GGATG	3 cut(s)	660, 885, 972
BseLI	CCNNNNNNNGG	3 cut(s)	366, 609, 721
BseMI	GCAATG	2 cut(s)	189, 1159
BseMII	CTCAG	2 cut(s)	281, 524
BseNI	ACTGG	5 cut(s)	234, 477, 664, 871, 940
BseRI	GAGGAG	2 cut(s)	366, 609
BseXI	GCAGC	4 cut(s)	157, 796, 1044, 1117
BseYI	CCCAGC	2 cut(s)	274, 517
Bsh1236I	CGCG	1 cut(s)	694
BshFI	GGCC	4 cut(s)	233, 476, 795, 878
BshNI	GGYRCC	2 cut(s)	332, 575
BshTI	ACCGGT	1 cut(s)	155
BsiHKCI	CYCGRG	1 cut(s)	982
BsiSI	CCGG	2 cut(s)	156, 993
BslI	CCNNNNNNNGG	3 cut(s)	366, 609, 721
BsmAI	GTCTC	3 cut(s)	90, 132, 1036
BsmBI	CGTCTC	1 cut(s)	90
BsmI	GAATGC	2 cut(s)	173, 917
BsnI	GGCC	4 cut(s)	233, 476, 795, 878
BsoBI	CYCGRG	1 cut(s)	982
Bsp1286I	GDGCHC	1 cut(s)	989
Bsp143I	GATC	8 cut(s)	402, 420, 679, 724, 742, 802, 1003, 1074
BspACI	CCGC	3 cut(s)	168, 367, 610
BspANI	GGCC	4 cut(s)	233, 476, 795, 878
BspCNI	CTCAG	2 cut(s)	282, 525
BspFNI	CGCG	1 cut(s)	694
BspLI	GGNNCC	2 cut(s)	334, 577
BspPI	GGATC	3 cut(s)	410, 732, 1069
BspT107I	GGYRCC	2 cut(s)	332, 575
BsrDI	GCAATG	2 cut(s)	189, 1159
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	5 cut(s)	234, 477, 664, 871, 940
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	904, 1009
BssMI	GATC	8 cut(s)	402, 420, 679, 724, 742, 802, 1003, 1074
Bst4CI	ACNGT	5 cut(s)	200, 332, 575, 1013, 1047
BstDEI	CTNAG	6 cut(s)	290, 398, 533, 720, 1082, 1134
BstDSI	CCRYGG	1 cut(s)	1009
BstF5I	GGATG	3 cut(s)	660, 885, 972
BstFNI	CGCG	1 cut(s)	694
BstHHI	GCGC	1 cut(s)	694
BstKTI	GATC	8 cut(s)	405, 423, 682, 727, 745, 805, 1006, 1077
BstMAI	GTCTC	3 cut(s)	90, 132, 1036
BstMBI	GATC	8 cut(s)	402, 420, 679, 724, 742, 802, 1003, 1074
BstMWI	GCNNNNNNNGC	8 cut(s)	179, 230, 280, 341, 473, 523, 584, 1014
BstNSI	RCATGY	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	991
BstUI	CGCG	1 cut(s)	694
BstV1I	GCAGC	4 cut(s)	157, 796, 1044, 1117
BstV2I	GAAGAC	2 cut(s)	443, 765
BstX2I	RGATCY	4 cut(s)	402, 420, 724, 742
BstYI	RGATCY	4 cut(s)	402, 420, 724, 742
BsuI	GTATCC	2 cut(s)	918, 989
BsuRI	GGCC	4 cut(s)	233, 476, 795, 878
BtgI	CCRYGG	1 cut(s)	1009
BtsCI	GGATG	3 cut(s)	660, 885, 972
BtsIMutI	CAGTG	4 cut(s)	64, 241, 484, 933
CfoI	GCGC	1 cut(s)	694
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	3 cut(s)	231, 474, 938
Csp6I	GTAC	2 cut(s)	696, 831
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	5 cut(s)	42, 381, 624, 977, 1036
CviQI	GTAC	2 cut(s)	696, 831
DdeI	CTNAG	6 cut(s)	290, 398, 533, 720, 1082, 1134
DpnI	GATC	8 cut(s)	404, 422, 681, 726, 744, 804, 1005, 1076
DpnII	GATC	8 cut(s)	402, 420, 679, 724, 742, 802, 1003, 1074
EaeI	YGGCCR	1 cut(s)	876
Eco24I	GRGCYC	1 cut(s)	989
Eco47I	GGWCC	1 cut(s)	938
Eco57I	CTGAAG	3 cut(s)	81, 330, 573
Eco88I	CYCGRG	1 cut(s)	982
EcoRI	GAATTC	1 cut(s)	145
EcoT22I	ATGCAT	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	989
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	5 cut(s)	45, 384, 627, 980, 1039
FalI	AAGNNNNNCTT	1 cut(s)	1163
FatI	CATG	5 cut(s)	41, 380, 623, 976, 1035
FbaI	TGATCA	1 cut(s)	679
FblI	GTMKAC	2 cut(s)	244, 487
Fnu4HI	GCNGC	6 cut(s)	171, 368, 611, 810, 1058, 1131
FokI	GGATG	3 cut(s)	647, 872, 959
FriOI	GRGCYC	1 cut(s)	989
Fsp4HI	GCNGC	6 cut(s)	171, 368, 611, 810, 1058, 1131
FspBI	CTAG	3 cut(s)	50, 806, 845
GlaI	GCGC	1 cut(s)	693
GluI	GCNGC	6 cut(s)	171, 368, 611, 810, 1058, 1131
GsaI	CCCAGC	2 cut(s)	278, 521
HaeIII	GGCC	4 cut(s)	233, 476, 795, 878
HapII	CCGG	2 cut(s)	156, 993
HhaI	GCGC	1 cut(s)	694
Hin1II	CATG	5 cut(s)	45, 384, 627, 980, 1039
Hin6I	GCGC	1 cut(s)	692
HinP1I	GCGC	1 cut(s)	692
HincII	GTYRAC	3 cut(s)	245, 488, 868
HindII	GTYRAC	3 cut(s)	245, 488, 868
HindIII	AAGCTT	1 cut(s)	1163
HinfI	GANTC	6 cut(s)	140, 305, 377, 548, 620, 643
HpaI	GTTAAC	1 cut(s)	868
HpaII	CCGG	2 cut(s)	156, 993
HphI	GGTGA	2 cut(s)	183, 212
Hpy166II	GTNNAC	3 cut(s)	245, 488, 868
Hpy188I	TCNGA	9 cut(s)	151, 315, 326, 411, 558, 569, 733, 822, 890
Hpy188III	TCNNGA	4 cut(s)	348, 591, 857, 922
Hpy8I	GTNNAC	3 cut(s)	245, 488, 868
HpyAV	CCTTC	4 cut(s)	99, 222, 465, 1081
HpyCH4III	ACNGT	5 cut(s)	200, 332, 575, 1013, 1047
HpyCH4V	TGCA	5 cut(s)	80, 173, 673, 1106, 1157
HpyF10VI	GCNNNNNNNGC	8 cut(s)	179, 230, 280, 341, 473, 523, 584, 1014
HpyF3I	CTNAG	6 cut(s)	290, 398, 533, 720, 1082, 1134
Hsp92II	CATG	5 cut(s)	45, 384, 627, 980, 1039
HspAI	GCGC	1 cut(s)	692
Ksp22I	TGATCA	1 cut(s)	679
KspAI	GTTAAC	1 cut(s)	868
Kzo9I	GATC	8 cut(s)	402, 420, 679, 724, 742, 802, 1003, 1074
LmnI	GCTCC	4 cut(s)	315, 353, 558, 596
Lsp1109I	GCAGC	4 cut(s)	157, 796, 1044, 1117
LweI	GCATC	3 cut(s)	67, 89, 197
MaeI	CTAG	3 cut(s)	50, 806, 845
MaeIII	GTNAC	2 cut(s)	37, 958
MalI	GATC	8 cut(s)	404, 422, 681, 726, 744, 804, 1005, 1076
MboI	GATC	8 cut(s)	402, 420, 679, 724, 742, 802, 1003, 1074
MboII	GAAGA	4 cut(s)	86, 202, 448, 770
MflI	RGATCY	4 cut(s)	402, 420, 724, 742
MhlI	GDGCHC	1 cut(s)	989
MlsI	TGGCCA	1 cut(s)	878
MluCI	AATT	8 cut(s)	145, 309, 337, 552, 562, 580, 839, 852
MluNI	TGGCCA	1 cut(s)	878
MlyI	GAGTC	6 cut(s)	134, 299, 386, 542, 629, 652
MmeI	TCCRAC	3 cut(s)	349, 592, 1102
MnlI	CCTC	6 cut(s)	59, 344, 587, 899, 999, 1107
Mox20I	TGGCCA	1 cut(s)	878
Mph1103I	ATGCAT	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	878
MseI	TTAA	1 cut(s)	867
Msp20I	TGGCCA	1 cut(s)	878
MspA1I	CMGCKG	3 cut(s)	170, 224, 467
MspI	CCGG	2 cut(s)	156, 993
MspR9I	CCNGG	1 cut(s)	993
Mva1269I	GAATGC	2 cut(s)	173, 917
MvnI	CGCG	1 cut(s)	694
MwoI	GCNNNNNNNGC	8 cut(s)	179, 230, 280, 341, 473, 523, 584, 1014
NciI	CCSGG	1 cut(s)	993
NdeII	GATC	8 cut(s)	402, 420, 679, 724, 742, 802, 1003, 1074
NlaIII	CATG	5 cut(s)	45, 384, 627, 980, 1039
NlaIV	GGNNCC	2 cut(s)	334, 577
NmeAIII	GCCGAG	2 cut(s)	292, 535
NmuCI	GTSAC	1 cut(s)	958
NsiI	ATGCAT	1 cut(s)	82
NspI	RCATGY	1 cut(s)	45
PciI	ACATGT	1 cut(s)	41
PctI	GAATGC	2 cut(s)	173, 917
PfoI	TCCNGGA	1 cut(s)	991
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	6 cut(s)	172, 369, 612, 811, 1059, 1132
PleI	GAGTC	6 cut(s)	134, 299, 385, 542, 628, 651
PpsI	GAGTC	6 cut(s)	134, 299, 385, 542, 628, 651
PscI	ACATGT	1 cut(s)	41
PspFI	CCCAGC	2 cut(s)	274, 517
PspN4I	GGNNCC	2 cut(s)	334, 577
PspPI	GGNCC	3 cut(s)	231, 474, 938
PsuI	RGATCY	4 cut(s)	402, 420, 724, 742
PvuII	CAGCTG	2 cut(s)	224, 467
RsaI	GTAC	2 cut(s)	697, 832
RsaNI	GTAC	2 cut(s)	696, 831
SalI	GTCGAC	2 cut(s)	243, 486
SaqAI	TTAA	1 cut(s)	867
SatI	GCNGC	6 cut(s)	171, 368, 611, 810, 1058, 1131
Sau3AI	GATC	8 cut(s)	402, 420, 679, 724, 742, 802, 1003, 1074
Sau96I	GGNCC	3 cut(s)	231, 474, 938
SchI	GAGTC	6 cut(s)	134, 299, 386, 542, 629, 652
ScrFI	CCNGG	1 cut(s)	993
SduI	GDGCHC	1 cut(s)	989
SfaNI	GCATC	3 cut(s)	67, 89, 197
SinI	GGWCC	1 cut(s)	938
Sse9I	AATT	8 cut(s)	145, 309, 337, 552, 562, 580, 839, 852
SsiI	CCGC	3 cut(s)	168, 367, 610
SspMI	CTAG	3 cut(s)	50, 806, 845
StyD4I	CCNGG	1 cut(s)	991
TaaI	ACNGT	5 cut(s)	200, 332, 575, 1013, 1047
TaqI	TCGA	4 cut(s)	143, 244, 487, 786
TaqII	GACCGA	1 cut(s)	918
TasI	AATT	8 cut(s)	145, 309, 337, 552, 562, 580, 839, 852
TauI	GCSGC	2 cut(s)	370, 613
Tru1I	TTAA	1 cut(s)	867
Tru9I	TTAA	1 cut(s)	867
TscAI	CASTG	4 cut(s)	64, 241, 484, 940
TseFI	GTSAC	1 cut(s)	958
TseI	GCWGC	4 cut(s)	170, 809, 1057, 1130
Tsp45I	GTSAC	1 cut(s)	958
TspDTI	ATGAA	2 cut(s)	285, 528
TspRI	CASTG	4 cut(s)	64, 241, 484, 940
VpaK11BI	GGWCC	1 cut(s)	938
XapI	RAATTY	2 cut(s)	145, 852
XceI	RCATGY	1 cut(s)	45
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XmiI	GTMKAC	2 cut(s)	244, 487
XspI	CTAG	3 cut(s)	50, 806, 845
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.