Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002827

Physical Location & Seq

Genomic Coordinates Reverse (-)

79742335 .. 79885276

Gene Structure 142942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG624200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGTGGGAATGGAGATTTGGAAACAACTACGGCTACTGTCTTCTGGGTTGTTCTTGGCTTTGTGCGTTCTGGGTGTGAGCGGTGGTGCGTTACCATCTTGTTCTTTTCCGGCAATCTACAACTTCGGCGACTCGAACTCCGACACCGGCGGGATCTCAGCCGCATTTGAACCGATTCGGGCACCCTACGGCGAGGGGTTCTTTCGTAAACCAGCTGGAAGGGACTCCGATGGTCGTCTCATCATAGACTTCATAGCTGAGCACCTAAAGTTGCCATACTTGAGTGCATACTTGAACTCGCTGGGAACAAATTACGGGCATGGTGCAAATTTTGCCACCGGAGGATCAACCATTAGAAGGCCGAATGAGACCATTTTCGAGTATGGCATAAGCCCCTTTTCGCTTGATATGCAGACGGCTCAGTTCCTGCAGTTCAAAGCTCGAACAGCTGATCTATTTCGACAAGCCAAGAATCCCTCTGATAGAAGCAAACTTCCAAATCCTCAAGACTTTGCAAAGGCACTCTATACGTTTGATATTGGGCAAAATGATCTCTCTGTTGGTTTTCGAAAGCTAAGCTTTGATCAGCTTCGTGCAGAAATTCCAGACATTGTAAACCAGCTGGCCACAGCAGTCCGACGTATATATGAACAAGGGGGGAGGGCATTTTGGATACACAACACAGGTCCGATTGGCTGTTTGCCAGTGAATCTGTTCTACAATCTTAATCCCGCACCAGGTTATGTCGATGAACATGGCTGTGTCAAGGGCCAAAACGACATGGCCATTGAATTCAACAGGCAGCTCAAGGACAGAGTCATCAAACTAAGAGCTGAGCTTCCGCAAGCTGCAATTACATATGTAGATGCCTATGCTGCTAAGTATGGACTCATCAGCAATGCAAAGAATGAAGGGTTTGTGGATCCAGTGAAGGTTTGCTGTGGGTATCATGTGCGATATGACCATGTGTGGTGTGGAAACAAAGCAACTGTAAATGGAAGTCTAGTTATGGTGCTTCATGTGGAAATCTTTCGTCTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

347

Amino Acids

38.4

Weight (kDa)

8.38

Isoelectric Point (pI)

29.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	39 - 322	1.3e-36	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14450
fragaria_vesca	FvH4_6g51890 FvH4_6g51890 FvH4_6g51900 FvH4_6g51910 FvH4_6g51910 FvH4_6g51910
malus_domestica	MD09G1021800.v1.1 MD09G1021900.v1.1 MD09G1022200.v1.1 MD17G1021700.v1.1
prunus_persica	Prupe.3G294400_v2.0.a1 Prupe.3G294400_v2.0.a1 Prupe.3G294500_v2.0.a1 Prupe.3G294500_v2.0.a1
pyrus_communis	pycom111g01820 pycom111g01830 pycom111g01860 pycom17g01880
rosa_chinensis	RchiOBHm_Chr2g0173381 RchiOBHm_Chr2g0173391
rosa_laevigata	RLG00000022184 RLG00000022185
rosa_multiflora	Rmu_co8202706.1_g000001 Rmu_co8257229.1_g000001 Rmu_ssc0000282.1_g000010 Rmu_ssc0000282.1_g000011
rosa_roxburghii	Rroxscaffold_2G00078930 Rroxscaffold_2G00078940
rosa_rugosa	Rorug02G0567700 Rorug02G0567800
rosa_samantha	Rh2AG648300 Rh2AG648400 Rh2BG658900 Rh2BG659000 Rh2CG624200 Rh2CG624300
rosa_wichuraiana	Rw2G053210 Rw2G053220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	181
AccBSI	CCGCTC	1 cut(s)	81
AciI	CCGC	5 cut(s)	81, 150, 162, 732, 842
AclWI	GGATC	4 cut(s)	161, 352, 917, 930
AcoI	YGGCCR	2 cut(s)	624, 783
AcsI	RAATTY	3 cut(s)	328, 600, 791
AfiI	CCNNNNNNNGG	2 cut(s)	357, 737
AgsI	TTSAA	5 cut(s)	170, 295, 436, 791, 796
AjnI	CCWGG	1 cut(s)	736
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	2 cut(s)	242, 362
AlwI	GGATC	4 cut(s)	161, 352, 917, 930
AlwNI	CAGNNNCTG	1 cut(s)	427
AoxI	GGCC	4 cut(s)	359, 624, 769, 783
ApeKI	GCWGC	3 cut(s)	802, 848, 875
ApoI	RAATTY	3 cut(s)	328, 600, 791
Asp700I	GAANNNNTTC	3 cut(s)	174, 713, 1029
AspS9I	GGNCC	2 cut(s)	686, 769
AsuII	TTCGAA	1 cut(s)	568
AvaII	GGWCC	1 cut(s)	686
BaeGI	GKGCMC	1 cut(s)	184
BalI	TGGCCA	2 cut(s)	626, 785
BamHI	GGATCC	1 cut(s)	922
BanI	GGYRCC	1 cut(s)	181
BbsI	GAAGAC	2 cut(s)	33, 1028
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	3 cut(s)	814, 835, 862
BccI	CCATC	2 cut(s)	103, 224
BceAI	ACGGC	3 cut(s)	47, 205, 432
BciT130I	CCWGG	1 cut(s)	738
BciVI	GTATCC	1 cut(s)	666
BclI	TGATCA	1 cut(s)	583
BcoDI	GTCTC	2 cut(s)	242, 362
BfaI	CTAG	1 cut(s)	1004
BfmI	CTRYAG	1 cut(s)	428
BfuI	GTATCC	1 cut(s)	666
BisI	GCNGC	4 cut(s)	162, 803, 849, 876
BlpI	GCTNAGC	3 cut(s)	258, 575, 834
BlsI	GCNGC	4 cut(s)	163, 804, 850, 877
Bme1390I	CCNGG	1 cut(s)	738
Bme18I	GGWCC	1 cut(s)	686
BmgT120I	GGNCC	2 cut(s)	686, 769
BmiI	GGNNCC	2 cut(s)	183, 924
BmrFI	CCNGG	1 cut(s)	738
BmsI	GCATC	1 cut(s)	856
BpiI	GAAGAC	2 cut(s)	33, 1028
Bpu1102I	GCTNAGC	3 cut(s)	258, 575, 834
Bpu14I	TTCGAA	1 cut(s)	568
BpuEI	CTTGAG	3 cut(s)	301, 489, 791
BsaI	GGTCTC	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	338
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	2 cut(s)	357, 737
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	704, 926
Bse3DI	GCAATG	1 cut(s)	904
BseBI	CCWGG	1 cut(s)	738
BseLI	CCNNNNNNNGG	2 cut(s)	357, 737
BseMI	GCAATG	1 cut(s)	904
BseMII	CTCAG	4 cut(s)	171, 249, 434, 825
BseNI	ACTGG	2 cut(s)	704, 926
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	3 cut(s)	814, 835, 862
BseYI	CCCAGC	1 cut(s)	301
BsgI	GTGCAG	1 cut(s)	615
BshFI	GGCC	4 cut(s)	361, 626, 771, 785
BshNI	GGYRCC	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	3 cut(s)	110, 147, 339
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	357, 737
BsmAI	GTCTC	2 cut(s)	242, 362
BsmBI	CGTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	4 cut(s)	361, 626, 771, 785
Bso31I	GGTCTC	1 cut(s)	362
Bsp119I	TTCGAA	1 cut(s)	568
Bsp1286I	GDGCHC	2 cut(s)	184, 264
Bsp143I	GATC	6 cut(s)	153, 344, 451, 550, 583, 922
Bsp1720I	GCTNAGC	3 cut(s)	258, 575, 834
BspACI	CCGC	5 cut(s)	81, 150, 162, 732, 842
BspANI	GGCC	4 cut(s)	361, 626, 771, 785
BspCNI	CTCAG	4 cut(s)	170, 250, 433, 826
BspLI	GGNNCC	2 cut(s)	183, 924
BspMAI	CTGCAG	1 cut(s)	432
BspPI	GGATC	4 cut(s)	161, 352, 917, 930
BspT104I	TTCGAA	1 cut(s)	568
BspT107I	GGYRCC	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	362
BsrBI	CCGCTC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	904
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	704, 926
BssAI	RCCGGY	1 cut(s)	146
BssMI	GATC	6 cut(s)	153, 344, 451, 550, 583, 922
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	2 cut(s)	39, 991
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstBI	TTCGAA	1 cut(s)	568
BstC8I	GCNNGC	2 cut(s)	624, 846
BstDEI	CTNAG	7 cut(s)	157, 258, 420, 575, 827, 834, 879
BstKTI	GATC	6 cut(s)	156, 347, 454, 553, 586, 925
BstMAI	GTCTC	2 cut(s)	242, 362
BstMBI	GATC	6 cut(s)	153, 344, 451, 550, 583, 922
BstMWI	GCNNNNNNNGC	4 cut(s)	332, 409, 446, 875
BstNI	CCWGG	1 cut(s)	738
BstSCI	CCNGG	1 cut(s)	736
BstSFI	CTRYAG	1 cut(s)	428
BstSLI	GKGCMC	1 cut(s)	184
BstV1I	GCAGC	3 cut(s)	814, 835, 862
BstV2I	GAAGAC	2 cut(s)	33, 1028
BstX2I	RGATCY	2 cut(s)	153, 922
BstYI	RGATCY	2 cut(s)	153, 922
BsuI	GTATCC	1 cut(s)	666
BsuRI	GGCC	4 cut(s)	361, 626, 771, 785
BtsIMutI	CAGTG	2 cut(s)	711, 933
Cac8I	GCNNGC	2 cut(s)	624, 846
CaiI	CAGNNNCTG	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	686, 769
CsiI	ACCWGGT	1 cut(s)	736
CviAII	CATG	6 cut(s)	320, 755, 781, 950, 965, 1019
DdeI	CTNAG	7 cut(s)	157, 258, 420, 575, 827, 834, 879
DpnI	GATC	6 cut(s)	155, 346, 453, 552, 585, 924
DpnII	GATC	6 cut(s)	153, 344, 451, 550, 583, 922
EaeI	YGGCCR	2 cut(s)	624, 783
Eco31I	GGTCTC	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	686
EcoRI	GAATTC	1 cut(s)	791
EcoRII	CCWGG	1 cut(s)	736
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	6 cut(s)	323, 758, 784, 953, 968, 1022
FalI	AAGNNNNNCTT	2 cut(s)	563, 595
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	6 cut(s)	319, 754, 780, 949, 964, 1018
FauI	CCCGC	2 cut(s)	143, 739
FauNDI	CATATG	1 cut(s)	859
FbaI	TGATCA	1 cut(s)	583
Fnu4HI	GCNGC	4 cut(s)	162, 803, 849, 876
Fsp4HI	GCNGC	4 cut(s)	162, 803, 849, 876
FspBI	CTAG	1 cut(s)	1004
GluI	GCNGC	4 cut(s)	162, 803, 849, 876
GsaI	CCCAGC	1 cut(s)	305
HaeIII	GGCC	4 cut(s)	361, 626, 771, 785
HapII	CCGG	3 cut(s)	110, 147, 339
Hin1II	CATG	6 cut(s)	323, 758, 784, 953, 968, 1022
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	7 cut(s)	131, 175, 224, 472, 709, 816, 888
HpaII	CCGG	3 cut(s)	110, 147, 339
Hpy166II	GTNNAC	2 cut(s)	209, 616
Hpy188I	TCNGA	5 cut(s)	142, 229, 481, 638, 690
Hpy188III	TCNNGA	2 cut(s)	506, 605
Hpy8I	GTNNAC	2 cut(s)	209, 616
Hpy99I	CGWCG	1 cut(s)	642
HpyAV	CCTTC	4 cut(s)	213, 351, 905, 925
HpyCH4III	ACNGT	2 cut(s)	39, 991
HpyCH4IV	ACGT	2 cut(s)	530, 640
HpyCH4V	TGCA	8 cut(s)	287, 326, 412, 430, 515, 596, 851, 902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	332, 409, 446, 875
HpyF3I	CTNAG	7 cut(s)	157, 258, 420, 575, 827, 834, 879
HpySE526I	ACGT	2 cut(s)	530, 640
Hsp92II	CATG	6 cut(s)	323, 758, 784, 953, 968, 1022
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	6 cut(s)	153, 344, 451, 550, 583, 922
Lsp1109I	GCAGC	3 cut(s)	814, 835, 862
LweI	GCATC	1 cut(s)	856
MabI	ACCWGGT	1 cut(s)	736
MaeI	CTAG	1 cut(s)	1004
MaeII	ACGT	2 cut(s)	530, 640
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	6 cut(s)	155, 346, 453, 552, 585, 924
MbiI	CCGCTC	1 cut(s)	81
MboI	GATC	6 cut(s)	153, 344, 451, 550, 583, 922
MboII	GAAGA	2 cut(s)	33, 1028
MflI	RGATCY	2 cut(s)	153, 922
MhlI	GDGCHC	2 cut(s)	184, 264
MlsI	TGGCCA	2 cut(s)	626, 785
MluCI	AATT	5 cut(s)	310, 328, 600, 791, 852
MluNI	TGGCCA	2 cut(s)	626, 785
MlyI	GAGTC	4 cut(s)	125, 218, 825, 882
MmeI	TCCRAC	2 cut(s)	165, 661
MnlI	CCTC	5 cut(s)	187, 335, 487, 513, 654
Mox20I	TGGCCA	2 cut(s)	626, 785
MroXI	GAANNNNTTC	3 cut(s)	174, 713, 1029
MscI	TGGCCA	2 cut(s)	626, 785
MseI	TTAA	1 cut(s)	726
MslI	CAYNNNNRTG	1 cut(s)	759
Msp20I	TGGCCA	2 cut(s)	626, 785
MspA1I	CMGCKG	3 cut(s)	215, 449, 622
MspI	CCGG	3 cut(s)	110, 147, 339
MspR9I	CCNGG	1 cut(s)	738
MvaI	CCWGG	1 cut(s)	738
MwoI	GCNNNNNNNGC	4 cut(s)	332, 409, 446, 875
NdeI	CATATG	1 cut(s)	859
NdeII	GATC	6 cut(s)	153, 344, 451, 550, 583, 922
NlaIII	CATG	6 cut(s)	323, 758, 784, 953, 968, 1022
NlaIV	GGNNCC	2 cut(s)	183, 924
NspV	TTCGAA	1 cut(s)	568
PdmI	GAANNNNTTC	3 cut(s)	174, 713, 1029
PfeI	GAWTC	3 cut(s)	175, 472, 709
PflFI	GACNNNGTC	1 cut(s)	815
PkrI	GCNGC	4 cut(s)	163, 804, 850, 877
PleI	GAGTC	4 cut(s)	125, 218, 824, 882
PpsI	GAGTC	4 cut(s)	125, 218, 824, 882
Psp6I	CCWGG	1 cut(s)	736
PspFI	CCCAGC	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	736
PspN4I	GGNNCC	2 cut(s)	183, 924
PspPI	GGNCC	2 cut(s)	686, 769
PstI	CTGCAG	1 cut(s)	432
PstNI	CAGNNNCTG	1 cut(s)	427
PsuI	RGATCY	2 cut(s)	153, 922
PsyI	GACNNNGTC	1 cut(s)	815
PvuII	CAGCTG	3 cut(s)	215, 449, 622
RseI	CAYNNNNRTG	1 cut(s)	759
SaqAI	TTAA	1 cut(s)	726
SatI	GCNGC	4 cut(s)	162, 803, 849, 876
Sau3AI	GATC	6 cut(s)	153, 344, 451, 550, 583, 922
Sau96I	GGNCC	2 cut(s)	686, 769
SchI	GAGTC	4 cut(s)	125, 218, 825, 882
ScrFI	CCNGG	1 cut(s)	738
SduI	GDGCHC	2 cut(s)	184, 264
SexAI	ACCWGGT	1 cut(s)	736
SfaNI	GCATC	1 cut(s)	856
SfcI	CTRYAG	1 cut(s)	428
SfuI	TTCGAA	1 cut(s)	568
SgrAI	CRCCGGYG	1 cut(s)	146
SinI	GGWCC	1 cut(s)	686
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	3 cut(s)	280, 504, 806
SmoI	CTYRAG	3 cut(s)	280, 504, 806
Sse9I	AATT	5 cut(s)	310, 328, 600, 791, 852
SsiI	CCGC	5 cut(s)	81, 150, 162, 732, 842
SspMI	CTAG	1 cut(s)	1004
StyD4I	CCNGG	1 cut(s)	736
TaaI	ACNGT	2 cut(s)	39, 991
TaiI	ACGT	2 cut(s)	533, 643
TaqI	TCGA	6 cut(s)	134, 378, 442, 460, 568, 747
TasI	AATT	5 cut(s)	310, 328, 600, 791, 852
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	3 cut(s)	175, 472, 709
Tru1I	TTAA	1 cut(s)	726
Tru9I	TTAA	1 cut(s)	726
TscAI	CASTG	2 cut(s)	711, 933
TseI	GCWGC	3 cut(s)	802, 848, 875
TspDTI	ATGAA	5 cut(s)	241, 663, 765, 924, 1007
TspRI	CASTG	2 cut(s)	711, 933
Tth111I	GACNNNGTC	1 cut(s)	815
VpaK11BI	GGWCC	1 cut(s)	686
XapI	RAATTY	3 cut(s)	328, 600, 791
XcmI	CCANNNNNNNNNTGG	1 cut(s)	971
XmnI	GAANNNNTTC	3 cut(s)	174, 713, 1029
XspI	CTAG	1 cut(s)	1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.