Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002678

Physical Location & Seq

Genomic Coordinates Forward (+)

13526596 .. 13534516

Gene Structure 7921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G216200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCTAGCAATTTCCTGTTTCTTCTTCTGCGTTTGTTCTCCTTCTTCTTTTTCTCCACATTCAGAGGCTTCACACTGAGAGTTGCAGAGGCTCGGGTGGTTCCAGCCATGTATGTTTTTGGAGACTCCTTAGTAGATGTGGGCAACAACAACTACCTCCAGTTTTCATTTGCCAAAGCAAATTTTCCTCACAATGGGATCGACTTTCCTACCAAAACACCAACTGGGAGATTTTGTAACGGCAAGAATGCTGCAGATCTTCTTGCTGAGAAAATGGGCTTACCAACCATACCACCATATCTCTCCATGGCATCTAAATCCAACAATCTTACCCTTTTCCTAAACGGTGTTAACTTTGCCTCTGGAGCTGCCAAAATCTTCAAGGACACAAATCAACAACATCCCCAGTCAATATCTTTTGGAGAACAAGTAGACTACTATTTGGCAGTGCAGAAAGAGCTTGTGCAAAAGCTAGGAGCCTCAAAAGCACAAACTCATCTGTCAAAATCTCTCTTCCCCATTGTCATTGGAAGCAATGACATCTACACTTACTTTGGCTCCTCCATTAATAACAGGACCTCACCCCAGCAGTATGTCAACTCCATGGCTGCCGCACTAAAACAGCAAGTGAAGCGCTTATATGATTATGGGGGTCGAAAATTTGTGATTGTTGGGGTTGCGCTTGTGGGATGCACCCCATATGAAAGGAATGAGCAAACAAATCAAGAATGCAATGCAGATGTGAATCAAATGGCTGCTAAGTACAATGGAGTTCTTGTGTCAATGTTGAAGAATTTGAAATCAGAGCTCAAAGGCATAAACTACTCCTACTTTGATGGCTACAGCGTCATGCACAACTTCATACAGAAACCAGCAGCTTATGGATTTGCTGAGGTTAAAGCTGCTTGCTGTGGCCTCGGGAAGCTTAATGCGGATGCTCCTTGCCTGCCATTTGCAACTTATTGCTCCAACAGAAGCGACCATCTTTTCTGGGATAGAACTCATCCTACTGAGGCAGCTCATCGCATCTTTGTGGATCGTATTCTTTATGGTCCTTTACAATACACCTTCCCAATAAACGTGCAAAAGCTAGTTGCCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

368

Amino Acids

40.9

Weight (kDa)

9.21

Isoelectric Point (pI)

25.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55050
fragaria_vesca	FvH4_3g19741 FvH4_3g19741 FvH4_3g19741 FvH4_3g19750 FvH4_3g19750
malus_domestica	MD03G1198600.v1.1 MD03G1198700.v1.1 MD03G1198800.v1.1 MD11G1214800.v1.1 MD11G1215100.v1.1
prunus_persica	Prupe.4G216200_v2.0.a1 Prupe.4G216300_v2.0.a1
pyrus_communis	pycom03g15010 pycom03g15020 pycom03g15030 pycom11g18920 pycom11g18940
rosa_chinensis	RchiOBHm_Chr5g0033121 RchiOBHm_Chr5g0033141
rosa_laevigata	RLG00000033449 RLG00000033450
rosa_multiflora	Rmu_sc0006107.1_g000006 Rmu_sc0006107.1_g000007
rosa_roxburghii	Rroxscaffold_1G00046830 Rroxscaffold_1G00046840 Rroxscaffold_1G00046950 Rroxscaffold_1G00046960
rosa_rugosa	Rorug05G0136800 Rorug05G0136900
rosa_samantha	Rh5AG228700 Rh5AG228800 Rh5BG229800 Rh5BG229900 Rh5CG257500 Rh5CG257600 Rh5DG234500 Rh5DG234600
rosa_wichuraiana	Rw5G020920 Rw5G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	2 cut(s)	612, 932
AclWI	GGATC	2 cut(s)	206, 1044
AcsI	RAATTY	3 cut(s)	181, 659, 793
AfaI	GTAC	1 cut(s)	764
AfeI	AGCGCT	1 cut(s)	635
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	3 cut(s)	382, 790, 799
AluBI	AGCT	9 cut(s)	368, 460, 472, 808, 878, 902, 925, 1019, 1090
AluI	AGCT	9 cut(s)	368, 460, 472, 808, 878, 902, 925, 1019, 1090
Alw21I	GWGCWC	1 cut(s)	810
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	206, 1044
Ama87I	CYCGRG	2 cut(s)	93, 917
Aor51HI	AGCGCT	1 cut(s)	635
AoxI	GGCC	1 cut(s)	913
ApeKI	GCWGC	7 cut(s)	251, 368, 608, 755, 875, 902, 1016
ApoI	RAATTY	3 cut(s)	181, 659, 793
AseI	ATTAAT	1 cut(s)	567
AspLEI	GCGC	2 cut(s)	636, 682
AspS9I	GGNCC	2 cut(s)	576, 1052
AsuHPI	GGTGA	1 cut(s)	573
AsuNHI	GCTAGC	1 cut(s)	5
AvaI	CYCGRG	2 cut(s)	93, 917
AvaII	GGWCC	2 cut(s)	576, 1052
BanII	GRGCYC	1 cut(s)	810
Bbv12I	GWGCWC	1 cut(s)	810
BbvCI	CCTCAGC	1 cut(s)	891
BbvI	GCAGC	7 cut(s)	238, 355, 595, 742, 887, 889, 1028
BccI	CCATC	2 cut(s)	830, 990
BceAI	ACGGC	2 cut(s)	256, 1082
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	3 cut(s)	6, 473, 1091
BfmI	CTRYAG	2 cut(s)	252, 841
BfoI	RGCGCY	1 cut(s)	637
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	8 cut(s)	252, 369, 609, 612, 756, 876, 903, 1017
BlsI	GCNGC	8 cut(s)	253, 370, 610, 613, 757, 877, 904, 1018
Bme18I	GGWCC	2 cut(s)	576, 1052
BmeT110I	CYCGRG	2 cut(s)	93, 917
BmgT120I	GGNCC	2 cut(s)	576, 1052
BmiI	GGNNCC	3 cut(s)	102, 478, 559
BmrI	ACTGGG	2 cut(s)	234, 400
BmsI	GCATC	4 cut(s)	320, 680, 925, 1035
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	2 cut(s)	234, 400
BpmI	CTGGAG	2 cut(s)	143, 384
Bpu10I	CCTNAGC	1 cut(s)	891
BsaBI	GATNNNNATC	1 cut(s)	744
BsaJI	CCNNGG	3 cut(s)	306, 603, 916
BsaXI	ACNNNNNCTCC	8 cut(s)	220, 250, 414, 444, 542, 572, 762, 792
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	3 cut(s)	160, 229, 406
Bse3DI	GCAATG	2 cut(s)	541, 739
Bse8I	GATNNNNATC	1 cut(s)	744
BseDI	CCNNGG	3 cut(s)	306, 603, 916
BseGI	GGATG	4 cut(s)	400, 695, 940, 1003
BseJI	GATNNNNATC	1 cut(s)	744
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	2 cut(s)	541, 739
BseMII	CTCAG	4 cut(s)	68, 258, 882, 1002
BseNI	ACTGG	3 cut(s)	160, 229, 406
BseRI	GAGGAG	1 cut(s)	550
BseXI	GCAGC	7 cut(s)	238, 355, 595, 742, 887, 889, 1028
BseYI	CCCAGC	1 cut(s)	585
BsgI	GTGCAG	1 cut(s)	470
BshFI	GGCC	1 cut(s)	915
BsiHKAI	GWGCWC	1 cut(s)	810
BsiHKCI	CYCGRG	2 cut(s)	93, 917
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	117
BsmI	GAATGC	2 cut(s)	253, 734
BsnI	GGCC	1 cut(s)	915
BsoBI	CYCGRG	2 cut(s)	93, 917
Bsp1286I	GDGCHC	1 cut(s)	810
Bsp143I	GATC	3 cut(s)	198, 256, 1036
Bsp19I	CCATGG	2 cut(s)	306, 603
BspACI	CCGC	2 cut(s)	612, 932
BspANI	GGCC	1 cut(s)	915
BspCNI	CTCAG	4 cut(s)	69, 259, 883, 1003
BspLI	GGNNCC	3 cut(s)	102, 478, 559
BspMAI	CTGCAG	1 cut(s)	256
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	2 cut(s)	206, 1044
BsrDI	GCAATG	2 cut(s)	541, 739
BsrI	ACTGG	3 cut(s)	160, 229, 406
BssECI	CCNNGG	3 cut(s)	306, 603, 916
BssMI	GATC	3 cut(s)	198, 256, 1036
BssT1I	CCWWGG	2 cut(s)	306, 603
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	1 cut(s)	518
BstC8I	GCNNGC	3 cut(s)	7, 907, 947
BstDEI	CTNAG	6 cut(s)	77, 130, 267, 759, 891, 1011
BstDSI	CCRYGG	2 cut(s)	306, 603
BstF5I	GGATG	4 cut(s)	400, 695, 940, 1003
BstH2I	RGCGCY	1 cut(s)	637
BstHHI	GCGC	2 cut(s)	636, 682
BstKTI	GATC	3 cut(s)	201, 259, 1039
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	3 cut(s)	198, 256, 1036
BstMWI	GCNNNNNNNGC	4 cut(s)	365, 457, 485, 631
BstSFI	CTRYAG	2 cut(s)	252, 841
BstV1I	GCAGC	7 cut(s)	238, 355, 595, 742, 887, 889, 1028
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	915
BtgI	CCRYGG	2 cut(s)	306, 603
BtgZI	GCGATG	1 cut(s)	1007
BtsCI	GGATG	4 cut(s)	400, 695, 940, 1003
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	2 cut(s)	74, 453
Cac8I	GCNNGC	3 cut(s)	7, 907, 947
CfoI	GCGC	2 cut(s)	636, 682
Cfr13I	GGNCC	2 cut(s)	576, 1052
CseI	GACGC	1 cut(s)	835
Csp6I	GTAC	1 cut(s)	763
CviAII	CATG	4 cut(s)	109, 307, 604, 850
CviQI	GTAC	1 cut(s)	763
DdeI	CTNAG	6 cut(s)	77, 130, 267, 759, 891, 1011
DpnI	GATC	3 cut(s)	200, 258, 1038
DpnII	GATC	3 cut(s)	198, 256, 1036
Eam1104I	CTCTTC	1 cut(s)	518
EarI	CTCTTC	1 cut(s)	518
Ecl136II	GAGCTC	1 cut(s)	808
Eco130I	CCWWGG	2 cut(s)	306, 603
Eco24I	GRGCYC	1 cut(s)	810
Eco47I	GGWCC	2 cut(s)	576, 1052
Eco47III	AGCGCT	1 cut(s)	635
Eco53kI	GAGCTC	1 cut(s)	808
Eco88I	CYCGRG	2 cut(s)	93, 917
EcoICRI	GAGCTC	1 cut(s)	808
EcoO109I	RGGNCCY	1 cut(s)	576
EcoT14I	CCWWGG	2 cut(s)	306, 603
EcoT38I	GRGCYC	1 cut(s)	810
ErhI	CCWWGG	2 cut(s)	306, 603
FaeI	CATG	4 cut(s)	112, 310, 607, 853
FatI	CATG	4 cut(s)	108, 306, 603, 849
FauNDI	CATATG	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	8 cut(s)	252, 369, 609, 612, 756, 876, 903, 1017
FokI	GGATG	4 cut(s)	387, 702, 947, 990
FriOI	GRGCYC	1 cut(s)	810
Fsp4HI	GCNGC	8 cut(s)	252, 369, 609, 612, 756, 876, 903, 1017
FspBI	CTAG	3 cut(s)	6, 473, 1091
GlaI	GCGC	2 cut(s)	635, 681
GluI	GCNGC	8 cut(s)	252, 369, 609, 612, 756, 876, 903, 1017
GsaI	CCCAGC	1 cut(s)	589
GsuI	CTGGAG	2 cut(s)	143, 384
HaeII	RGCGCY	1 cut(s)	637
HaeIII	GGCC	1 cut(s)	915
HgaI	GACGC	1 cut(s)	835
HhaI	GCGC	2 cut(s)	636, 682
Hin1II	CATG	4 cut(s)	112, 310, 607, 853
Hin6I	GCGC	2 cut(s)	634, 680
HinP1I	GCGC	2 cut(s)	634, 680
HincII	GTYRAC	2 cut(s)	352, 598
HindII	GTYRAC	2 cut(s)	352, 598
HindIII	AAGCTT	1 cut(s)	923
HinfI	GANTC	2 cut(s)	125, 745
HpaI	GTTAAC	1 cut(s)	352
HphI	GGTGA	1 cut(s)	573
Hpy166II	GTNNAC	3 cut(s)	352, 433, 598
Hpy188I	TCNGA	2 cut(s)	65, 805
Hpy188III	TCNNGA	3 cut(s)	363, 725, 919
Hpy8I	GTNNAC	3 cut(s)	352, 433, 598
HpyAV	CCTTC	2 cut(s)	52, 1078
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	1080
HpyF10VI	GCNNNNNNNGC	4 cut(s)	365, 457, 485, 631
HpyF3I	CTNAG	6 cut(s)	77, 130, 267, 759, 891, 1011
HpySE526I	ACGT	1 cut(s)	1080
Hsp92II	CATG	4 cut(s)	112, 310, 607, 853
HspAI	GCGC	2 cut(s)	634, 680
KspAI	GTTAAC	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	198, 256, 1036
LmnI	GCTCC	5 cut(s)	365, 476, 563, 943, 971
Lsp1109I	GCAGC	7 cut(s)	238, 355, 595, 742, 887, 889, 1028
LweI	GCATC	4 cut(s)	320, 680, 925, 1035
MaeI	CTAG	3 cut(s)	6, 473, 1091
MaeII	ACGT	1 cut(s)	1080
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	3 cut(s)	200, 258, 1038
MboI	GATC	3 cut(s)	198, 256, 1036
MboII	GAAGA	7 cut(s)	14, 17, 37, 251, 370, 505, 802
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	810
MluCI	AATT	4 cut(s)	10, 181, 659, 793
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	2 cut(s)	345, 993
MseI	TTAA	5 cut(s)	351, 567, 897, 927, 1102
MslI	CAYNNNNRTG	1 cut(s)	1031
Mva1269I	GAATGC	2 cut(s)	253, 734
MwoI	GCNNNNNNNGC	4 cut(s)	365, 457, 485, 631
NcoI	CCATGG	2 cut(s)	306, 603
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	3 cut(s)	198, 256, 1036
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	112, 310, 607, 853
NlaIV	GGNNCC	3 cut(s)	102, 478, 559
PctI	GAATGC	2 cut(s)	253, 734
PfeI	GAWTC	1 cut(s)	745
PkrI	GCNGC	8 cut(s)	253, 370, 610, 613, 757, 877, 904, 1018
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	576
PshBI	ATTAAT	1 cut(s)	567
Psp124BI	GAGCTC	1 cut(s)	810
Psp5II	RGGWCCY	1 cut(s)	576
PspFI	CCCAGC	1 cut(s)	585
PspN4I	GGNNCC	3 cut(s)	102, 478, 559
PspPI	GGNCC	2 cut(s)	576, 1052
PspPPI	RGGWCCY	1 cut(s)	576
PsrI	GAACNNNNNNTAC	2 cut(s)	991, 1023
PstI	CTGCAG	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	1 cut(s)	764
RsaNI	GTAC	1 cut(s)	763
RseI	CAYNNNNRTG	1 cut(s)	1031
SacI	GAGCTC	1 cut(s)	810
SaqAI	TTAA	5 cut(s)	351, 567, 897, 927, 1102
SatI	GCNGC	8 cut(s)	252, 369, 609, 612, 756, 876, 903, 1017
Sau3AI	GATC	3 cut(s)	198, 256, 1036
Sau96I	GGNCC	2 cut(s)	576, 1052
SchI	GAGTC	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	810
SfaNI	GCATC	4 cut(s)	320, 680, 925, 1035
SfcI	CTRYAG	2 cut(s)	252, 841
SinI	GGWCC	2 cut(s)	576, 1052
SmiMI	CAYNNNNRTG	1 cut(s)	1031
Sse9I	AATT	4 cut(s)	10, 181, 659, 793
SsiI	CCGC	2 cut(s)	612, 932
SspMI	CTAG	3 cut(s)	6, 473, 1091
SstI	GAGCTC	1 cut(s)	810
StyI	CCWWGG	2 cut(s)	306, 603
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	1 cut(s)	1083
TaqI	TCGA	2 cut(s)	201, 655
TasI	AATT	4 cut(s)	10, 181, 659, 793
TatI	WGTACW	1 cut(s)	762
TauI	GCSGC	1 cut(s)	614
TfiI	GAWTC	1 cut(s)	745
Tru1I	TTAA	5 cut(s)	351, 567, 897, 927, 1102
Tru9I	TTAA	5 cut(s)	351, 567, 897, 927, 1102
TscAI	CASTG	2 cut(s)	81, 453
TseI	GCWGC	7 cut(s)	251, 368, 608, 755, 875, 902, 1016
TspDTI	ATGAA	3 cut(s)	156, 717, 850
TspRI	CASTG	2 cut(s)	81, 453
VpaK11BI	GGWCC	2 cut(s)	576, 1052
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	3 cut(s)	181, 659, 793
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	3 cut(s)	6, 473, 1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.