Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002678

Physical Location & Seq

Genomic Coordinates Forward (+)

13560044 .. 13562275

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G216300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGATCATGGCTCCTTCCAATGTTTTTCCAATCACTTTCTTCTTCTTCACCTTCTTCTCTGTCTTCATCACTCTCTCAAAAGCTCAGATGGTTCCGGCCATTTACGTGTTTGGCGACTCCTTAGCCGATGTGGGTAACAACAATTACCTAAAGATCTCTCTTCTCAAGGCTAATTTCCCCCACAATGGTGTTGATTTTCCCAACAAGAAAGCAACCGGCAGGTTTGGAAATGGCAAGAATTCTGCCGATTTTCTTGCCGAGAAAGTTGGGTTGCCAACATCACCACCCTATCTCTCACTTGTATCCAAGTCCAACAAGCAAAATTTGTCCTTTGTCGCCGGAGTTAGCTTCGCCTCCGGAGGGGCTGGAATCTTCAATGGCTCCGACGAAAAATTTCGGCAGTCAATTCCTTTGTCATATCAAGTAAACTACTATTCACAAGTGTATGAAGACATCGGGCTAGAATTGGGATCCAACGGTGCCCAGGACCATCTGTCAAAATCTCTGTTTGTCATTGTGATTGGAAGCAACGACATCTTCGCCTACTTTGACTCATCCAAGCTCCGCAAGGAATCAACACCCAACCAGTACGTAGATTCCATGGTCTCGAATCTAAAACAGCAATTAGAGAGAATAAATTCTTTGGGCGCTCGAAAATTTGTAGTTGTCGGGACTGGGCCAGTTGGATGCTGCCCAGCTCAAAGGATTTCAAATGACGGAGATTGCAACGAAGATGCAAACTCCATGTCTATCCGCTACAACGACGGCCTTAAGTCGATGTTACAGCAGTCGGAAGCGGCAGTGCACATAAAATACACCTTCTTCGAGACGTACGGTGTCTTCTCGGACATCATTCAGAACGGAGCTTCTTACGGATTTACCGAGACCGAAGCTGCATGCTGTGGTTTTGGAAAGCTTAACGCCGACTCTTTTTGCCTTCCGATTTCGTCTTTGTGCTCCAACAGAACGGACCATGTCTTCTGGGACAAATTCCATCCCACAGAGGCAACTCATGGTATCTTGGTGGACAAACTTTTCGATGGTCCTTCACAATACACATTCCCAACGAATGTGAAGAAGTTAATTGCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

365

Amino Acids

39.9

Weight (kDa)

6.31

Isoelectric Point (pI)

28.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55050
fragaria_vesca	FvH4_3g19741 FvH4_3g19741 FvH4_3g19741 FvH4_3g19750 FvH4_3g19750
malus_domestica	MD03G1198600.v1.1 MD03G1198700.v1.1 MD03G1198800.v1.1 MD11G1214800.v1.1 MD11G1215100.v1.1
prunus_persica	Prupe.4G216200_v2.0.a1 Prupe.4G216300_v2.0.a1
pyrus_communis	pycom03g15010 pycom03g15020 pycom03g15030 pycom11g18920 pycom11g18940
rosa_chinensis	RchiOBHm_Chr5g0033121 RchiOBHm_Chr5g0033141
rosa_laevigata	RLG00000033449 RLG00000033450
rosa_multiflora	Rmu_sc0006107.1_g000006 Rmu_sc0006107.1_g000007
rosa_roxburghii	Rroxscaffold_1G00046830 Rroxscaffold_1G00046840 Rroxscaffold_1G00046950 Rroxscaffold_1G00046960
rosa_rugosa	Rorug05G0136800 Rorug05G0136900
rosa_samantha	Rh5AG228700 Rh5AG228800 Rh5BG229800 Rh5BG229900 Rh5CG257500 Rh5CG257600 Rh5DG234500 Rh5DG234600
rosa_wichuraiana	Rw5G020920 Rw5G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	479
AccIII	TCCGGA	1 cut(s)	356
AciI	CCGC	3 cut(s)	565, 754, 797
AclWI	GGATC	2 cut(s)	465, 478
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	6 cut(s)	238, 322, 392, 637, 656, 989
AfaI	GTAC	2 cut(s)	590, 833
AfiI	CCNNNNNNNGG	2 cut(s)	185, 360
AflII	CTTAAG	1 cut(s)	770
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	376, 711
AhdI	GACNNNNNGTC	1 cut(s)	493
AjnI	CCWGG	1 cut(s)	483
AleI	CACNNNNGTG	1 cut(s)	186
AluBI	AGCT	7 cut(s)	83, 348, 562, 698, 866, 893, 916
AluI	AGCT	7 cut(s)	83, 348, 562, 698, 866, 893, 916
Alw21I	GWGCWC	2 cut(s)	807, 959
Alw26I	GTCTC	3 cut(s)	610, 821, 878
Alw44I	GTGCAC	1 cut(s)	803
AlwI	GGATC	2 cut(s)	465, 478
Aor13HI	TCCGGA	1 cut(s)	356
AoxI	GGCC	3 cut(s)	96, 677, 766
ApaLI	GTGCAC	1 cut(s)	803
ApeKI	GCWGC	2 cut(s)	690, 893
ApoI	RAATTY	6 cut(s)	238, 322, 392, 637, 656, 989
ArsI	GACNNNNNNTTYG	4 cut(s)	731, 763, 1019, 1051
Asp700I	GAANNNNTTC	2 cut(s)	393, 637
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	4 cut(s)	487, 677, 970, 1043
AsuHPI	GGTGA	2 cut(s)	40, 273
AvaII	GGWCC	3 cut(s)	487, 970, 1043
BaeGI	GKGCMC	2 cut(s)	484, 807
BamHI	GGATCC	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	479
BarI	GAAGNNNNNNTAC	2 cut(s)	824, 856
BbsI	GAAGAC	4 cut(s)	55, 456, 832, 970
Bbv12I	GWGCWC	2 cut(s)	807, 959
BbvI	GCAGC	2 cut(s)	677, 880
BccI	CCATC	4 cut(s)	82, 498, 1002, 1034
BceAI	ACGGC	1 cut(s)	781
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	1 cut(s)	485
BciVI	GTATCC	1 cut(s)	313
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	3 cut(s)	610, 821, 878
BfaI	CTAG	1 cut(s)	461
BfoI	RGCGCY	1 cut(s)	651
BfrI	CTTAAG	1 cut(s)	770
BfuAI	ACCTGC	1 cut(s)	210
BfuI	GTATCC	1 cut(s)	313
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	3 cut(s)	691, 798, 894
BlsI	GCNGC	3 cut(s)	692, 799, 895
Bme1390I	CCNGG	1 cut(s)	485
Bme18I	GGWCC	3 cut(s)	487, 970, 1043
BmeRI	GACNNNNNGTC	1 cut(s)	493
BmgT120I	GGNCC	4 cut(s)	487, 677, 970, 1043
BmiI	GGNNCC	5 cut(s)	12, 93, 382, 472, 481
BmrFI	CCNGG	1 cut(s)	485
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	2 cut(s)	677, 724
BmuI	ACTGGG	1 cut(s)	684
BpiI	GAAGAC	4 cut(s)	55, 456, 832, 970
Bpu10I	CCTNAGC	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	149
BsaAI	YACGTR	2 cut(s)	106, 592
BsaI	GGTCTC	2 cut(s)	610, 878
BsaJI	CCNNGG	2 cut(s)	483, 600
BsaWI	WCCGGW	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 360
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	3 cut(s)	586, 679, 680
BseAI	TCCGGA	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	2 cut(s)	483, 600
BseGI	GGATG	3 cut(s)	554, 692, 994
BseLI	CCNNNNNNNGG	2 cut(s)	185, 360
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	3 cut(s)	586, 679, 680
BseSI	GKGCMC	2 cut(s)	484, 807
BseXI	GCAGC	2 cut(s)	677, 880
BseYI	CCCAGC	1 cut(s)	694
BshFI	GGCC	3 cut(s)	98, 679, 768
BshNI	GGYRCC	1 cut(s)	479
BsiHKAI	GWGCWC	2 cut(s)	807, 959
BsiSI	CCGG	4 cut(s)	95, 216, 339, 357
BsiWI	CGTACG	1 cut(s)	831
BslFI	GGGAC	2 cut(s)	685, 998
BslI	CCNNNNNNNGG	2 cut(s)	185, 360
BsmAI	GTCTC	3 cut(s)	610, 821, 878
BsmBI	CGTCTC	1 cut(s)	821
BsmFI	GGGAC	2 cut(s)	685, 998
BsnI	GGCC	3 cut(s)	98, 679, 768
Bso31I	GGTCTC	2 cut(s)	610, 878
Bsp1286I	GDGCHC	3 cut(s)	484, 807, 959
Bsp13I	TCCGGA	1 cut(s)	356
Bsp143I	GATC	3 cut(s)	3, 153, 470
Bsp19I	CCATGG	1 cut(s)	600
BspACI	CCGC	3 cut(s)	565, 754, 797
BspANI	GGCC	3 cut(s)	98, 679, 768
BspCNI	CTCAG	1 cut(s)	97
BspEI	TCCGGA	1 cut(s)	356
BspLI	GGNNCC	5 cut(s)	12, 93, 382, 472, 481
BspMI	ACCTGC	1 cut(s)	210
BspPI	GGATC	2 cut(s)	465, 478
BspT107I	GGYRCC	1 cut(s)	479
BspTI	CTTAAG	1 cut(s)	770
BspTNI	GGTCTC	2 cut(s)	610, 878
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	3 cut(s)	586, 679, 680
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	2 cut(s)	483, 600
BssMI	GATC	3 cut(s)	3, 153, 470
BssT1I	CCWWGG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	2 cut(s)	479, 836
Bst6I	CTCTTC	1 cut(s)	165
BstAFI	CTTAAG	1 cut(s)	770
BstBAI	YACGTR	2 cut(s)	106, 592
BstC8I	GCNNGC	1 cut(s)	898
BstDEI	CTNAG	2 cut(s)	84, 121
BstDSI	CCRYGG	1 cut(s)	600
BstF5I	GGATG	3 cut(s)	554, 692, 994
BstH2I	RGCGCY	1 cut(s)	651
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	3 cut(s)	6, 156, 473
BstMAI	GTCTC	3 cut(s)	610, 821, 878
BstMBI	GATC	3 cut(s)	3, 153, 470
BstNI	CCWGG	1 cut(s)	485
BstNSI	RCATGY	1 cut(s)	900
BstSCI	CCNGG	1 cut(s)	483
BstSLI	GKGCMC	2 cut(s)	484, 807
BstSNI	TACGTA	1 cut(s)	592
BstV1I	GCAGC	2 cut(s)	677, 880
BstV2I	GAAGAC	4 cut(s)	55, 456, 832, 970
BstX2I	RGATCY	2 cut(s)	153, 470
BstYI	RGATCY	2 cut(s)	153, 470
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	3 cut(s)	98, 679, 768
BtgI	CCRYGG	1 cut(s)	600
BtsCI	GGATG	3 cut(s)	554, 692, 994
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	1 cut(s)	807
BveI	ACCTGC	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	898
CfoI	GCGC	1 cut(s)	650
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	4 cut(s)	487, 677, 970, 1043
Csp6I	GTAC	2 cut(s)	589, 832
CviAII	CATG	6 cut(s)	7, 601, 745, 897, 974, 1013
CviQI	GTAC	2 cut(s)	589, 832
DdeI	CTNAG	2 cut(s)	84, 121
DpnI	GATC	3 cut(s)	5, 155, 472
DpnII	GATC	3 cut(s)	3, 153, 470
DriI	GACNNNNNGTC	1 cut(s)	493
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	165
Eam1105I	GACNNNNNGTC	1 cut(s)	493
EarI	CTCTTC	1 cut(s)	165
Eco105I	TACGTA	1 cut(s)	592
Eco130I	CCWWGG	1 cut(s)	600
Eco31I	GGTCTC	2 cut(s)	610, 878
Eco47I	GGWCC	3 cut(s)	487, 970, 1043
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	600
Esp3I	CGTCTC	1 cut(s)	821
FaeI	CATG	6 cut(s)	10, 604, 748, 900, 977, 1016
FaqI	GGGAC	2 cut(s)	685, 998
FatI	CATG	6 cut(s)	6, 600, 744, 896, 973, 1012
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	691, 798, 894
FokI	GGATG	3 cut(s)	541, 699, 981
Fsp4HI	GCNGC	3 cut(s)	691, 798, 894
FspBI	CTAG	1 cut(s)	461
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	3 cut(s)	691, 798, 894
GsaI	CCCAGC	1 cut(s)	698
HaeII	RGCGCY	1 cut(s)	651
HaeIII	GGCC	3 cut(s)	98, 679, 768
HapII	CCGG	4 cut(s)	95, 216, 339, 357
HhaI	GCGC	1 cut(s)	650
Hin1II	CATG	6 cut(s)	10, 604, 748, 900, 977, 1016
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HindIII	AAGCTT	1 cut(s)	914
HinfI	GANTC	7 cut(s)	116, 369, 551, 572, 596, 610, 926
HpaII	CCGG	4 cut(s)	95, 216, 339, 357
HphI	GGTGA	2 cut(s)	40, 273
Hpy166II	GTNNAC	3 cut(s)	427, 805, 1027
Hpy188I	TCNGA	6 cut(s)	87, 385, 793, 847, 858, 942
Hpy188III	TCNNGA	4 cut(s)	357, 607, 670, 826
Hpy8I	GTNNAC	3 cut(s)	427, 805, 1027
Hpy99I	CGWCG	2 cut(s)	389, 767
HpyAV	CCTTC	5 cut(s)	24, 61, 829, 947, 1056
HpyCH4III	ACNGT	2 cut(s)	479, 836
HpyCH4IV	ACGT	3 cut(s)	105, 591, 830
HpyCH4V	TGCA	4 cut(s)	726, 737, 805, 896
HpyF3I	CTNAG	2 cut(s)	84, 121
HpySE526I	ACGT	3 cut(s)	105, 591, 830
Hsp92II	CATG	6 cut(s)	10, 604, 748, 900, 977, 1016
HspAI	GCGC	1 cut(s)	648
Kpn2I	TCCGGA	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 153, 470
LmnI	GCTCC	5 cut(s)	16, 386, 567, 863, 962
Lsp1109I	GCAGC	2 cut(s)	677, 880
LweI	GCATC	2 cut(s)	677, 724
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	3 cut(s)	105, 591, 830
MaeIII	GTNAC	2 cut(s)	134, 780
MalI	GATC	3 cut(s)	5, 155, 472
MboI	GATC	3 cut(s)	3, 153, 470
MflI	RGATCY	2 cut(s)	153, 470
MhlI	GDGCHC	3 cut(s)	484, 807, 959
MlyI	GAGTC	3 cut(s)	110, 545, 920
MmeI	TCCRAC	6 cut(s)	336, 408, 498, 664, 771, 984
MnlI	CCTC	3 cut(s)	353, 364, 997
MroI	TCCGGA	1 cut(s)	356
MroXI	GAANNNNTTC	2 cut(s)	393, 637
MseI	TTAA	3 cut(s)	771, 918, 1082
MslI	CAYNNNNRTG	2 cut(s)	104, 186
MspCI	CTTAAG	1 cut(s)	770
MspI	CCGG	4 cut(s)	95, 216, 339, 357
MspR9I	CCNGG	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	485
NcoI	CCATGG	1 cut(s)	600
NdeII	GATC	3 cut(s)	3, 153, 470
NlaIII	CATG	6 cut(s)	10, 604, 748, 900, 977, 1016
NlaIV	GGNNCC	5 cut(s)	12, 93, 382, 472, 481
NmeAIII	GCCGAG	1 cut(s)	283
NspI	RCATGY	1 cut(s)	900
OliI	CACNNNNGTG	1 cut(s)	186
PaeI	GCATGC	1 cut(s)	900
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 879
PdmI	GAANNNNTTC	2 cut(s)	393, 637
PfeI	GAWTC	4 cut(s)	369, 572, 596, 610
Pfl23II	CGTACG	1 cut(s)	831
PflFI	GACNNNGTC	1 cut(s)	974
PkrI	GCNGC	3 cut(s)	692, 799, 895
PleI	GAGTC	3 cut(s)	110, 545, 920
PpsI	GAGTC	3 cut(s)	110, 545, 920
Ppu21I	YACGTR	2 cut(s)	106, 592
Psp6I	CCWGG	1 cut(s)	483
PspFI	CCCAGC	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	483
PspLI	CGTACG	1 cut(s)	831
PspN4I	GGNNCC	5 cut(s)	12, 93, 382, 472, 481
PspPI	GGNCC	4 cut(s)	487, 677, 970, 1043
PsuI	RGATCY	2 cut(s)	153, 470
PsyI	GACNNNGTC	1 cut(s)	974
RsaI	GTAC	2 cut(s)	590, 833
RsaNI	GTAC	2 cut(s)	589, 832
RseI	CAYNNNNRTG	2 cut(s)	104, 186
SaqAI	TTAA	3 cut(s)	771, 918, 1082
SatI	GCNGC	3 cut(s)	691, 798, 894
Sau3AI	GATC	3 cut(s)	3, 153, 470
Sau96I	GGNCC	4 cut(s)	487, 677, 970, 1043
SchI	GAGTC	3 cut(s)	110, 545, 920
ScrFI	CCNGG	1 cut(s)	485
SduI	GDGCHC	3 cut(s)	484, 807, 959
SfaNI	GCATC	2 cut(s)	677, 724
SinI	GGWCC	3 cut(s)	487, 970, 1043
SmiMI	CAYNNNNRTG	2 cut(s)	104, 186
SmlI	CTYRAG	2 cut(s)	164, 770
SmoI	CTYRAG	2 cut(s)	164, 770
SnaBI	TACGTA	1 cut(s)	592
SphI	GCATGC	1 cut(s)	900
SsiI	CCGC	3 cut(s)	565, 754, 797
SspMI	CTAG	1 cut(s)	461
StyD4I	CCNGG	1 cut(s)	483
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	2 cut(s)	479, 836
TaiI	ACGT	3 cut(s)	108, 594, 833
TaqI	TCGA	5 cut(s)	608, 652, 776, 825, 1038
TaqII	GACCGA	1 cut(s)	902
TauI	GCSGC	1 cut(s)	800
TfiI	GAWTC	4 cut(s)	369, 572, 596, 610
Tru1I	TTAA	3 cut(s)	771, 918, 1082
Tru9I	TTAA	3 cut(s)	771, 918, 1082
TscAI	CASTG	1 cut(s)	807
TseI	GCWGC	2 cut(s)	690, 893
TspDTI	ATGAA	2 cut(s)	55, 462
TspGWI	ACGGA	4 cut(s)	732, 876, 888, 983
TspRI	CASTG	1 cut(s)	807
Tth111I	GACNNNGTC	1 cut(s)	974
Vha464I	CTTAAG	1 cut(s)	770
VneI	GTGCAC	1 cut(s)	803
VpaK11BI	GGWCC	3 cut(s)	487, 970, 1043
XapI	RAATTY	6 cut(s)	238, 322, 392, 637, 656, 989
XceI	RCATGY	1 cut(s)	900
XmnI	GAANNNNTTC	2 cut(s)	393, 637
XspI	CTAG	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.