Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006107.1

Orthogroup ID

OG0002678

Physical Location & Seq

Genomic Coordinates Reverse (-)

11802 .. 13724

Gene Structure 1923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006107.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

atgaccatggaagcttgcagtgtttctcctacgattttcttctccattatcgtttctgtgttcatcgctttctcaaatgctcagacggttccggccatttacatatttggagactctctattggatgttggtaacaacaattaccttaccatctctgtggccaaggcaaattttcctcacaacggtatcgattttccgaccaagaaaccaaccgggaggttttgcaatggcaagaattctgcagattttctggctgagaaagtaggattgcctacttccccaccatatctgtcgcttgtatcaaaatctaataagcaaaaggggtccttcgaagctggagtaagcttcgcctctggaggggctggaatcttcaacggcaccgatgatgaatatcgtcagtcactacctttgacaaaacaaataggctactattcacaagtttgtgaagaacttcggcaacaattaggagctcaagctgcccaagaccatctatcgaaatctctacatgtcgttcttattggaagcaatgacgttttcggctacttagattcatccagcacccaaaagcaatacacaccggatcagtatgtggatttgatgctgtctactcttaaacaacacttaaagagaatacacagtcttggtgcacgaaaatttgtaattctcgggactggacccgttggatgttgtccagcacgaagggatgataaaacaggagagtgcaatgaagtaggaaactccatctctgcaaagtatagtgatggcctcaagtcaatgatgcagcaattgaaaccggcactgggcataaactactccttcttcgagacttatggcatcttccgtaacatcgtccagaatccatcaacttacggatttaatgagactaaagctgcatgctgtggcctcgggtttcttaacgcaaaggctccttgtataccagtttcatcctactgctccaatagaaggaaccatatgttctgggatttttaccatcctacagaggcaactcacaaaatcttggtggaacatctttttgagggttccacatacacagtcccaatgaatgtgaagaatttagtttctctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

362

Amino Acids

39.7

Weight (kDa)

8.42

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55050
fragaria_vesca	FvH4_3g19741 FvH4_3g19741 FvH4_3g19741 FvH4_3g19750 FvH4_3g19750
malus_domestica	MD03G1198600.v1.1 MD03G1198700.v1.1 MD03G1198800.v1.1 MD11G1214800.v1.1 MD11G1215100.v1.1
prunus_persica	Prupe.4G216200_v2.0.a1 Prupe.4G216300_v2.0.a1
pyrus_communis	pycom03g15010 pycom03g15020 pycom03g15030 pycom11g18920 pycom11g18940
rosa_chinensis	RchiOBHm_Chr5g0033121 RchiOBHm_Chr5g0033141
rosa_laevigata	RLG00000033449 RLG00000033450
rosa_multiflora	Rmu_sc0006107.1_g000006 Rmu_sc0006107.1_g000007
rosa_roxburghii	Rroxscaffold_1G00046830 Rroxscaffold_1G00046840 Rroxscaffold_1G00046950 Rroxscaffold_1G00046960
rosa_rugosa	Rorug05G0136800 Rorug05G0136900
rosa_samantha	Rh5AG228700 Rh5AG228800 Rh5BG229800 Rh5BG229900 Rh5CG257500 Rh5CG257600 Rh5DG234500 Rh5DG234600
rosa_wichuraiana	Rw5G020920 Rw5G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	377
AccI	GTMKAC	2 cut(s)	605, 934
AclWI	GGATC	1 cut(s)	588
AcoI	YGGCCR	2 cut(s)	93, 159
AcsI	RAATTY	4 cut(s)	169, 235, 653, 1072
AfiI	CCNNNNNNNGG	4 cut(s)	182, 357, 800, 963
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	2 cut(s)	373, 790
AluBI	AGCT	6 cut(s)	14, 335, 345, 470, 476, 890
AluI	AGCT	6 cut(s)	14, 335, 345, 470, 476, 890
Alw21I	GWGCWC	2 cut(s)	472, 649
Alw26I	GTCTC	3 cut(s)	105, 818, 875
Alw44I	GTGCAC	1 cut(s)	645
AlwI	GGATC	1 cut(s)	588
Ama87I	CYCGRG	2 cut(s)	665, 905
AoxI	GGCC	4 cut(s)	93, 159, 763, 901
ApaLI	GTGCAC	1 cut(s)	645
ApeKI	GCWGC	3 cut(s)	476, 781, 890
ApoI	RAATTY	4 cut(s)	169, 235, 653, 1072
Asp700I	GAANNNNTTC	1 cut(s)	450
AspS9I	GGNCC	2 cut(s)	324, 674
AsuC2I	CCSGG	1 cut(s)	214
AsuII	TTCGAA	1 cut(s)	330
AvaI	CYCGRG	2 cut(s)	665, 905
AvaII	GGWCC	2 cut(s)	324, 674
BaeGI	GKGCMC	1 cut(s)	649
BaeI	ACNNNNGTAYC	2 cut(s)	169, 202
BalI	TGGCCA	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	472
Bbv12I	GWGCWC	2 cut(s)	472, 649
BbvI	GCAGC	3 cut(s)	463, 793, 877
BccI	CCATC	6 cut(s)	158, 495, 749, 755, 868, 999
BceAI	ACGGC	1 cut(s)	391
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	3 cut(s)	105, 818, 875
BfmI	CTRYAG	2 cut(s)	240, 996
BisI	GCNGC	3 cut(s)	477, 782, 891
BlsI	GCNGC	3 cut(s)	478, 783, 892
Bme1390I	CCNGG	1 cut(s)	214
Bme18I	GGWCC	2 cut(s)	324, 674
BmeT110I	CYCGRG	2 cut(s)	665, 905
BmgT120I	GGNCC	2 cut(s)	324, 674
BmiI	GGNNCC	7 cut(s)	90, 325, 379, 676, 927, 968, 1042
BmrFI	CCNGG	1 cut(s)	214
BmrI	ACTGGG	1 cut(s)	809
BmsI	GCATC	3 cut(s)	588, 768, 843
BmuI	ACTGGG	1 cut(s)	809
BpmI	CTGGAG	2 cut(s)	357, 375
Bpu14I	TTCGAA	1 cut(s)	330
BpuEI	CTTGAG	2 cut(s)	456, 752
BpuMI	CCSGG	1 cut(s)	214
Bsa29I	ATCGAT	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	6, 162, 904
BsaWI	WCCGGW	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	4 cut(s)	182, 357, 800, 963
Bse118I	RCCGGY	1 cut(s)	793
Bse1I	ACTGG	3 cut(s)	676, 804, 938
Bse3DI	GCAATG	3 cut(s)	232, 532, 730
Bse8I	GATNNNNATC	1 cut(s)	390
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	3 cut(s)	6, 162, 904
BseGI	GGATG	6 cut(s)	130, 551, 689, 709, 944, 991
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	4 cut(s)	182, 357, 800, 963
BseMI	GCAATG	3 cut(s)	232, 532, 730
BseMII	CTCAG	2 cut(s)	95, 246
BseNI	ACTGG	3 cut(s)	676, 804, 938
BseSI	GKGCMC	1 cut(s)	649
BseXI	GCAGC	3 cut(s)	463, 793, 877
BshFI	GGCC	4 cut(s)	95, 161, 765, 903
BshNI	GGYRCC	1 cut(s)	377
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	2 cut(s)	472, 649
BsiHKCI	CYCGRG	2 cut(s)	665, 905
BsiSI	CCGG	4 cut(s)	92, 213, 578, 794
BslFI	GGGAC	2 cut(s)	682, 1040
BslI	CCNNNNNNNGG	4 cut(s)	182, 357, 800, 963
BsmAI	GTCTC	3 cut(s)	105, 818, 875
BsmFI	GGGAC	2 cut(s)	682, 1040
BsnI	GGCC	4 cut(s)	95, 161, 765, 903
BsoBI	CYCGRG	2 cut(s)	665, 905
Bsp119I	TTCGAA	1 cut(s)	330
Bsp1286I	GDGCHC	2 cut(s)	472, 649
Bsp143I	GATC	1 cut(s)	580
Bsp19I	CCATGG	1 cut(s)	6
BspANI	GGCC	4 cut(s)	95, 161, 765, 903
BspCNI	CTCAG	2 cut(s)	94, 247
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	7 cut(s)	90, 325, 379, 676, 927, 968, 1042
BspMAI	CTGCAG	1 cut(s)	244
BspPI	GGATC	1 cut(s)	588
BspT104I	TTCGAA	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	377
BsrDI	GCAATG	3 cut(s)	232, 532, 730
BsrFI	RCCGGY	1 cut(s)	793
BsrI	ACTGG	3 cut(s)	676, 804, 938
BssAI	RCCGGY	1 cut(s)	793
BssECI	CCNNGG	3 cut(s)	6, 162, 904
BssMI	GATC	1 cut(s)	580
BssNAI	GTATAC	1 cut(s)	935
BssT1I	CCWWGG	2 cut(s)	6, 162
Bst1107I	GTATAC	1 cut(s)	935
Bst4CI	ACNGT	4 cut(s)	88, 185, 638, 1054
BstBI	TTCGAA	1 cut(s)	330
BstC8I	GCNNGC	2 cut(s)	16, 895
BstDEI	CTNAG	3 cut(s)	81, 255, 544
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	6 cut(s)	130, 551, 689, 709, 944, 991
BstKTI	GATC	1 cut(s)	583
BstMAI	GTCTC	3 cut(s)	105, 818, 875
BstMBI	GATC	1 cut(s)	580
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstNSI	RCATGY	2 cut(s)	509, 897
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	2 cut(s)	240, 996
BstSLI	GKGCMC	1 cut(s)	649
BstV1I	GCAGC	3 cut(s)	463, 793, 877
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstZ17I	GTATAC	1 cut(s)	935
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	4 cut(s)	95, 161, 765, 903
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	6
BtgZI	GCGATG	1 cut(s)	49
BtsCI	GGATG	6 cut(s)	130, 551, 689, 709, 944, 991
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 797
Cac8I	GCNNGC	2 cut(s)	16, 895
Cfr10I	RCCGGY	1 cut(s)	793
Cfr13I	GGNCC	2 cut(s)	324, 674
ClaI	ATCGAT	1 cut(s)	189
CviAII	CATG	3 cut(s)	7, 506, 894
DdeI	CTNAG	3 cut(s)	81, 255, 544
DpnI	GATC	1 cut(s)	582
DpnII	GATC	1 cut(s)	580
EaeI	YGGCCR	2 cut(s)	93, 159
Ecl136II	GAGCTC	1 cut(s)	470
Eco130I	CCWWGG	2 cut(s)	6, 162
Eco24I	GRGCYC	1 cut(s)	472
Eco47I	GGWCC	2 cut(s)	324, 674
Eco53kI	GAGCTC	1 cut(s)	470
Eco88I	CYCGRG	2 cut(s)	665, 905
EcoICRI	GAGCTC	1 cut(s)	470
EcoO109I	RGGNCCY	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	235
EcoT14I	CCWWGG	2 cut(s)	6, 162
EcoT38I	GRGCYC	1 cut(s)	472
ErhI	CCWWGG	2 cut(s)	6, 162
FaeI	CATG	3 cut(s)	10, 509, 897
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	2 cut(s)	682, 1040
FatI	CATG	3 cut(s)	6, 505, 893
FauNDI	CATATG	1 cut(s)	972
FblI	GTMKAC	2 cut(s)	605, 934
Fnu4HI	GCNGC	3 cut(s)	477, 782, 891
FokI	GGATG	6 cut(s)	137, 538, 696, 716, 931, 978
FriOI	GRGCYC	1 cut(s)	472
Fsp4HI	GCNGC	3 cut(s)	477, 782, 891
GluI	GCNGC	3 cut(s)	477, 782, 891
GsuI	CTGGAG	2 cut(s)	357, 375
HaeIII	GGCC	4 cut(s)	95, 161, 765, 903
HapII	CCGG	4 cut(s)	92, 213, 578, 794
Hin1II	CATG	3 cut(s)	10, 509, 897
HindIII	AAGCTT	2 cut(s)	12, 343
HinfI	GANTC	4 cut(s)	113, 366, 548, 856
HpaII	CCGG	4 cut(s)	92, 213, 578, 794
Hpy166II	GTNNAC	3 cut(s)	606, 647, 935
Hpy188I	TCNGA	3 cut(s)	84, 198, 1088
Hpy188III	TCNNGA	4 cut(s)	354, 667, 823, 853
Hpy8I	GTNNAC	3 cut(s)	606, 647, 935
HpyAV	CCTTC	4 cut(s)	337, 693, 826, 957
HpyCH4III	ACNGT	4 cut(s)	88, 185, 638, 1054
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	8 cut(s)	18, 225, 242, 647, 723, 749, 781, 893
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	3 cut(s)	81, 255, 544
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	3 cut(s)	10, 509, 897
Kzo9I	GATC	1 cut(s)	580
LmnI	GCTCC	3 cut(s)	467, 931, 959
Lsp1109I	GCAGC	3 cut(s)	463, 793, 877
LweI	GCATC	3 cut(s)	588, 768, 843
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	3 cut(s)	131, 399, 842
MalI	GATC	1 cut(s)	582
MboI	GATC	1 cut(s)	580
MboII	GAAGA	6 cut(s)	31, 361, 458, 811, 829, 1081
MfeI	CAATTG	1 cut(s)	785
MhlI	GDGCHC	2 cut(s)	472, 649
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	8 cut(s)	139, 169, 235, 461, 653, 660, 785, 1072
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	2 cut(s)	221, 661
MnlI	CCTC	8 cut(s)	186, 210, 350, 361, 776, 914, 994, 1030
Mox20I	TGGCCA	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	4 cut(s)	612, 623, 876, 915
MslI	CAYNNNNRTG	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	161
MspI	CCGG	4 cut(s)	92, 213, 578, 794
MspR9I	CCNGG	1 cut(s)	214
MunI	CAATTG	1 cut(s)	785
MwoI	GCNNNNNNNGC	1 cut(s)	476
NciI	CCSGG	1 cut(s)	214
NcoI	CCATGG	1 cut(s)	6
NdeI	CATATG	1 cut(s)	972
NdeII	GATC	1 cut(s)	580
NlaIII	CATG	3 cut(s)	10, 509, 897
NlaIV	GGNNCC	7 cut(s)	90, 325, 379, 676, 927, 968, 1042
NmuCI	GTSAC	1 cut(s)	399
NspI	RCATGY	2 cut(s)	509, 897
NspV	TTCGAA	1 cut(s)	330
PaeI	GCATGC	1 cut(s)	897
PciI	ACATGT	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	3 cut(s)	366, 548, 856
PkrI	GCNGC	3 cut(s)	478, 783, 892
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PpuMI	RGGWCCY	1 cut(s)	324
PscI	ACATGT	1 cut(s)	505
Psp124BI	GAGCTC	1 cut(s)	472
Psp5II	RGGWCCY	1 cut(s)	324
PspN4I	GGNNCC	7 cut(s)	90, 325, 379, 676, 927, 968, 1042
PspPI	GGNCC	2 cut(s)	324, 674
PspPPI	RGGWCCY	1 cut(s)	324
PstI	CTGCAG	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	155
SacI	GAGCTC	1 cut(s)	472
SaqAI	TTAA	4 cut(s)	612, 623, 876, 915
SatI	GCNGC	3 cut(s)	477, 782, 891
Sau3AI	GATC	1 cut(s)	580
Sau96I	GGNCC	2 cut(s)	324, 674
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	214
SduI	GDGCHC	2 cut(s)	472, 649
SfaNI	GCATC	3 cut(s)	588, 768, 843
SfcI	CTRYAG	2 cut(s)	240, 996
SfuI	TTCGAA	1 cut(s)	330
SinI	GGWCC	2 cut(s)	324, 674
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	2 cut(s)	471, 767
SmoI	CTYRAG	2 cut(s)	471, 767
SphI	GCATGC	1 cut(s)	897
Sse9I	AATT	8 cut(s)	139, 169, 235, 461, 653, 660, 785, 1072
SstI	GAGCTC	1 cut(s)	472
StyD4I	CCNGG	1 cut(s)	212
StyI	CCWWGG	2 cut(s)	6, 162
TaaI	ACNGT	4 cut(s)	88, 185, 638, 1054
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	4 cut(s)	189, 330, 494, 822
TasI	AATT	8 cut(s)	139, 169, 235, 461, 653, 660, 785, 1072
TfiI	GAWTC	3 cut(s)	366, 548, 856
Tru1I	TTAA	4 cut(s)	612, 623, 876, 915
Tru9I	TTAA	4 cut(s)	612, 623, 876, 915
TscAI	CASTG	2 cut(s)	25, 804
TseFI	GTSAC	1 cut(s)	399
TseI	GCWGC	3 cut(s)	476, 781, 890
Tsp45I	GTSAC	1 cut(s)	399
TspDTI	ATGAA	6 cut(s)	52, 402, 540, 741, 933, 1076
TspGWI	ACGGA	2 cut(s)	830, 885
TspRI	CASTG	2 cut(s)	25, 804
VneI	GTGCAC	1 cut(s)	645
VpaK11BI	GGWCC	2 cut(s)	324, 674
XapI	RAATTY	4 cut(s)	169, 235, 653, 1072
XceI	RCATGY	2 cut(s)	509, 897
XmiI	GTMKAC	2 cut(s)	605, 934
XmnI	GAANNNNTTC	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.