Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002678

Physical Location & Seq

Genomic Coordinates Reverse (-)

21160137 .. 21162128

Gene Structure 1992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g18920.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCTAAATATCACACTGATGGTTTGCCAATGGCTTCCTTCGTCGTCGTCTTCTCTCTCTTCACTTCTAGTTTCATCATCCCTCTTTCGGAAGCTCAGATGGTTCCAGCCATTTACGTGTTCGGAGACTCGTTAGTGGACGTCGGTAACAACAATTACCTAAAAATTTCTCTTGCCAAGGCAAATTTTCCTTATAATGGGATTGATTATCCTGGCAAAGTAGCCACGGGGAGGTTTGGTAATGGCAAGAATTCTGCAGATTTTCTTGCCGAGAAAGTAGGATTACCACCGTCACCACCATACCTGTCACTTGTATCCAAGTTCAACAAGCAAAAGAAGTCATTCGTCAATGGAGTTAGCTTCGCCTCCGGAGGAGCTGGAATCTTCAATGGTTCAGATAAACAATTTCGTCAGTCAATACCTTTGTCATACCAAGTAAACTACTACTCAGAAGTACATCAAAACATTGGACTACAGTTAGGATCCAAGGGCGCCAAAGTCCATCTTTCAAAATCTCTGTTTTTGATCGTGATTGGAAGCAATGACATCTTCGGCTACATCAAAAACTTCAAGCTCCAAAGCGAATACACGCCGCAGCAGTACGCAGTTTTGATGGCGTCAAATCTAAAGGAACAATTACAGAGAATACATGCTCTCGGCGCCCAAAAATTTGTAGTTGTCGGGACTGGGCCGGTTGGATGCTGTCCGGCGCAAAGGGATTTAGATACAGAAGAGTGCAATGATGGCGCAAACTCATTGTCTGTCATGTACAATGAAGCCCTTAAGTCCATGTTGCAGCAATTGAAACCGGCGTTGGGCATAAGCTACACCCTCTTGAACACTTACACTGTCTTGACTAATATCGTGCAAAACGCAGCTTCTTACGGATTTACAGAGGCTAAAGCTGCATGCTGTGGGATTGGGAAGCTTAACGCCCAGGGTCCTTGCCTGCCAGTTGCATCCTTGTGCTCCAACAGAAGGGACCATGTCTTCTGGGATTTTTACCATCCTTCACAGGCAACTCATGGCATCATAGTGGAAAAATTTTTCGATGGCCCTTCAAAATACGCATCCCCAATGACTGTGAAGGAGTTAATCGCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

369

Amino Acids

40.0

Weight (kDa)

8.88

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55050
fragaria_vesca	FvH4_3g19741 FvH4_3g19741 FvH4_3g19741 FvH4_3g19750 FvH4_3g19750
malus_domestica	MD03G1198600.v1.1 MD03G1198700.v1.1 MD03G1198800.v1.1 MD11G1214800.v1.1 MD11G1215100.v1.1
prunus_persica	Prupe.4G216200_v2.0.a1 Prupe.4G216300_v2.0.a1
pyrus_communis	pycom03g15010 pycom03g15020 pycom03g15030 pycom11g18920 pycom11g18940
rosa_chinensis	RchiOBHm_Chr5g0033121 RchiOBHm_Chr5g0033141
rosa_laevigata	RLG00000033449 RLG00000033450
rosa_multiflora	Rmu_sc0006107.1_g000006 Rmu_sc0006107.1_g000007
rosa_roxburghii	Rroxscaffold_1G00046830 Rroxscaffold_1G00046840 Rroxscaffold_1G00046950 Rroxscaffold_1G00046960
rosa_rugosa	Rorug05G0136800 Rorug05G0136900
rosa_samantha	Rh5AG228700 Rh5AG228800 Rh5BG229800 Rh5BG229900 Rh5CG257500 Rh5CG257600 Rh5DG234500 Rh5DG234600
rosa_wichuraiana	Rw5G020920 Rw5G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AatII	GACGTC	1 cut(s)	144
AccB1I	GGYRCC	2 cut(s)	491, 659
AccIII	TCCGGA	1 cut(s)	368
AciI	CCGC	1 cut(s)	593
AclWI	GGATC	2 cut(s)	477, 490
AcsI	RAATTY	5 cut(s)	165, 184, 250, 668, 1043
AcyI	GRCGYC	4 cut(s)	141, 492, 617, 660
AfaI	GTAC	3 cut(s)	456, 602, 770
AfiI	CCNNNNNNNGG	5 cut(s)	88, 197, 231, 815, 978
AflII	CTTAAG	1 cut(s)	782
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	7 cut(s)	325, 388, 510, 571, 805, 838, 1062
AjnI	CCWGG	2 cut(s)	211, 936
AjuI	GAANNNNNNNTTGG	2 cut(s)	797, 829
AluBI	AGCT	8 cut(s)	95, 360, 377, 574, 825, 878, 905, 928
AluI	AGCT	8 cut(s)	95, 360, 377, 574, 825, 878, 905, 928
Alw21I	GWGCWC	1 cut(s)	971
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	2 cut(s)	477, 490
Aor13HI	TCCGGA	1 cut(s)	368
AoxI	GGCC	2 cut(s)	689, 1054
ApeKI	GCWGC	4 cut(s)	595, 796, 875, 905
ApoI	RAATTY	5 cut(s)	165, 184, 250, 668, 1043
ArsI	GACNNNNNNTTYG	2 cut(s)	743, 775
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	4 cut(s)	494, 662, 712, 749
AspS9I	GGNCC	4 cut(s)	689, 941, 982, 1055
AsuHPI	GGTGA	1 cut(s)	285
AvaII	GGWCC	2 cut(s)	941, 982
BamHI	GGATCC	1 cut(s)	482
BanI	GGYRCC	2 cut(s)	491, 659
BbsI	GAAGAC	2 cut(s)	43, 982
Bbv12I	GWGCWC	1 cut(s)	971
BbvI	GCAGC	4 cut(s)	607, 808, 887, 892
BccI	CCATC	7 cut(s)	14, 94, 510, 607, 737, 1014, 1046
BciT130I	CCWGG	2 cut(s)	213, 938
BciVI	GTATCC	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	2 cut(s)	255, 473
BfoI	RGCGCY	2 cut(s)	495, 663
BfrI	CTTAAG	1 cut(s)	782
BfuI	GTATCC	1 cut(s)	325
BisI	GCNGC	5 cut(s)	593, 596, 797, 876, 906
BlsI	GCNGC	5 cut(s)	594, 597, 798, 877, 907
Bme1390I	CCNGG	2 cut(s)	213, 938
Bme18I	GGWCC	2 cut(s)	941, 982
BmgT120I	GGNCC	4 cut(s)	689, 941, 982, 1055
BmiI	GGNNCC	6 cut(s)	105, 484, 493, 661, 942, 983
BmrFI	CCNGG	2 cut(s)	213, 938
BmrI	ACTGGG	1 cut(s)	696
BmsI	GCATC	4 cut(s)	689, 968, 1038, 1079
BmuI	ACTGGG	1 cut(s)	696
BpiI	GAAGAC	2 cut(s)	43, 982
BsaAI	YACGTR	1 cut(s)	118
BsaHI	GRCGYC	4 cut(s)	141, 492, 617, 660
BsaJI	CCNNGG	5 cut(s)	177, 225, 486, 936, 937
BsaWI	WCCGGW	1 cut(s)	368
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 197, 231, 815, 978
Bse118I	RCCGGY	2 cut(s)	691, 808
Bse1I	ACTGG	2 cut(s)	691, 953
Bse3DI	GCAATG	2 cut(s)	547, 745
BseAI	TCCGGA	1 cut(s)	368
BseBI	CCWGG	2 cut(s)	213, 938
BseDI	CCNNGG	5 cut(s)	177, 225, 486, 936, 937
BseGI	GGATG	5 cut(s)	78, 704, 959, 1006, 1070
BseLI	CCNNNNNNNGG	5 cut(s)	88, 197, 231, 815, 978
BseMI	GCAATG	2 cut(s)	547, 745
BseMII	CTCAG	2 cut(s)	110, 462
BseNI	ACTGG	2 cut(s)	691, 953
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	4 cut(s)	607, 808, 887, 892
BshFI	GGCC	2 cut(s)	691, 1056
BshNI	GGYRCC	2 cut(s)	491, 659
BsiHKAI	GWGCWC	1 cut(s)	971
BsiSI	CCGG	4 cut(s)	369, 692, 707, 809
BslFI	GGGAC	2 cut(s)	697, 995
BslI	CCNNNNNNNGG	5 cut(s)	88, 197, 231, 815, 978
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	2 cut(s)	697, 995
BsnI	GGCC	2 cut(s)	691, 1056
Bsp1286I	GDGCHC	1 cut(s)	971
Bsp13I	TCCGGA	1 cut(s)	368
Bsp1407I	TGTACA	1 cut(s)	768
Bsp143I	GATC	2 cut(s)	482, 525
BspACI	CCGC	1 cut(s)	593
BspANI	GGCC	2 cut(s)	691, 1056
BspCNI	CTCAG	2 cut(s)	109, 461
BspEI	TCCGGA	1 cut(s)	368
BspLI	GGNNCC	6 cut(s)	105, 484, 493, 661, 942, 983
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	2 cut(s)	477, 490
BspT107I	GGYRCC	2 cut(s)	491, 659
BspTI	CTTAAG	1 cut(s)	782
BsrDI	GCAATG	2 cut(s)	547, 745
BsrFI	RCCGGY	2 cut(s)	691, 808
BsrGI	TGTACA	1 cut(s)	768
BsrI	ACTGG	2 cut(s)	691, 953
BssAI	RCCGGY	2 cut(s)	691, 808
BssECI	CCNNGG	5 cut(s)	177, 225, 486, 936, 937
BssMI	GATC	2 cut(s)	482, 525
BssNI	GRCGYC	4 cut(s)	141, 492, 617, 660
BssT1I	CCWWGG	2 cut(s)	177, 486
Bst2UI	CCWGG	2 cut(s)	213, 938
Bst4CI	ACNGT	4 cut(s)	291, 477, 850, 1084
Bst6I	CTCTTC	2 cut(s)	65, 726
BstACI	GRCGYC	4 cut(s)	141, 492, 617, 660
BstAFI	CTTAAG	1 cut(s)	782
BstAUI	TGTACA	1 cut(s)	768
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	910, 950
BstDEI	CTNAG	2 cut(s)	96, 448
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	5 cut(s)	78, 704, 959, 1006, 1070
BstH2I	RGCGCY	2 cut(s)	495, 663
BstHHI	GCGC	4 cut(s)	494, 662, 712, 749
BstKTI	GATC	2 cut(s)	485, 528
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	2 cut(s)	482, 525
BstMWI	GCNNNNNNNGC	3 cut(s)	659, 744, 905
BstNI	CCWGG	2 cut(s)	213, 938
BstNSI	RCATGY	2 cut(s)	653, 912
BstSCI	CCNGG	2 cut(s)	211, 936
BstSFI	CTRYAG	2 cut(s)	255, 473
BstV1I	GCAGC	4 cut(s)	607, 808, 887, 892
BstV2I	GAAGAC	2 cut(s)	43, 982
BstX2I	RGATCY	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	482
BsuI	GTATCC	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	691, 1056
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	5 cut(s)	78, 704, 959, 1006, 1070
BtsIMutI	CAGTG	2 cut(s)	15, 846
Cac8I	GCNNGC	2 cut(s)	910, 950
CfoI	GCGC	4 cut(s)	494, 662, 712, 749
Cfr10I	RCCGGY	2 cut(s)	691, 808
Cfr13I	GGNCC	4 cut(s)	689, 941, 982, 1055
CseI	GACGC	1 cut(s)	606
Csp6I	GTAC	3 cut(s)	455, 601, 769
CviAII	CATG	6 cut(s)	650, 766, 790, 909, 986, 1025
CviQI	GTAC	3 cut(s)	455, 601, 769
DdeI	CTNAG	2 cut(s)	96, 448
DinI	GGCGCC	2 cut(s)	493, 661
DpnI	GATC	2 cut(s)	484, 527
DpnII	GATC	2 cut(s)	482, 525
Eam1104I	CTCTTC	2 cut(s)	65, 726
EarI	CTCTTC	2 cut(s)	65, 726
Eco130I	CCWWGG	2 cut(s)	177, 486
Eco47I	GGWCC	2 cut(s)	941, 982
EcoO109I	RGGNCCY	1 cut(s)	941
EcoRI	GAATTC	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	211, 936
EcoT14I	CCWWGG	2 cut(s)	177, 486
EgeI	GGCGCC	2 cut(s)	493, 661
EheI	GGCGCC	2 cut(s)	493, 661
ErhI	CCWWGG	2 cut(s)	177, 486
FaeI	CATG	6 cut(s)	653, 769, 793, 912, 989, 1028
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FaqI	GGGAC	2 cut(s)	697, 995
FatI	CATG	6 cut(s)	649, 765, 789, 908, 985, 1024
Fnu4HI	GCNGC	5 cut(s)	593, 596, 797, 876, 906
FokI	GGATG	5 cut(s)	65, 711, 946, 993, 1057
Fsp4HI	GCNGC	5 cut(s)	593, 596, 797, 876, 906
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	4 cut(s)	493, 661, 711, 748
GluI	GCNGC	5 cut(s)	593, 596, 797, 876, 906
HaeII	RGCGCY	2 cut(s)	495, 663
HaeIII	GGCC	2 cut(s)	691, 1056
HapII	CCGG	4 cut(s)	369, 692, 707, 809
HgaI	GACGC	1 cut(s)	606
HhaI	GCGC	4 cut(s)	494, 662, 712, 749
Hin1I	GRCGYC	4 cut(s)	141, 492, 617, 660
Hin1II	CATG	6 cut(s)	653, 769, 793, 912, 989, 1028
Hin6I	GCGC	4 cut(s)	492, 660, 710, 747
HinP1I	GCGC	4 cut(s)	492, 660, 710, 747
HindIII	AAGCTT	1 cut(s)	926
HinfI	GANTC	2 cut(s)	128, 381
HpaII	CCGG	4 cut(s)	369, 692, 707, 809
HphI	GGTGA	1 cut(s)	285
Hpy166II	GTNNAC	2 cut(s)	139, 439
Hpy188I	TCNGA	5 cut(s)	91, 99, 125, 397, 451
Hpy188III	TCNNGA	5 cut(s)	369, 529, 682, 835, 853
Hpy8I	GTNNAC	2 cut(s)	139, 439
Hpy99I	CGWCG	3 cut(s)	47, 50, 146
HpyAV	CCTTC	5 cut(s)	49, 972, 1020, 1068, 1081
HpyCH4III	ACNGT	4 cut(s)	291, 477, 850, 1084
HpyCH4IV	ACGT	2 cut(s)	117, 141
HpyCH4V	TGCA	6 cut(s)	257, 738, 796, 868, 908, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	659, 744, 905
HpyF3I	CTNAG	2 cut(s)	96, 448
HpySE526I	ACGT	2 cut(s)	117, 141
Hsp92I	GRCGYC	4 cut(s)	141, 492, 617, 660
Hsp92II	CATG	6 cut(s)	653, 769, 793, 912, 989, 1028
HspAI	GCGC	4 cut(s)	492, 660, 710, 747
KasI	GGCGCC	2 cut(s)	491, 659
Kpn2I	TCCGGA	1 cut(s)	368
Kzo9I	GATC	2 cut(s)	482, 525
LmnI	GCTCC	3 cut(s)	374, 579, 974
Lsp1109I	GCAGC	4 cut(s)	607, 808, 887, 892
LweI	GCATC	4 cut(s)	689, 968, 1038, 1079
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	2 cut(s)	117, 141
MaeIII	GTNAC	3 cut(s)	146, 291, 306
MalI	GATC	2 cut(s)	484, 527
MboI	GATC	2 cut(s)	482, 525
MboII	GAAGA	6 cut(s)	43, 52, 376, 541, 743, 982
MfeI	CAATTG	1 cut(s)	800
MflI	RGATCY	1 cut(s)	482
MhlI	GDGCHC	1 cut(s)	971
MluCI	AATT	9 cut(s)	154, 165, 184, 250, 404, 635, 668, 800, 1043
Mly113I	GGCGCC	2 cut(s)	492, 660
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	2 cut(s)	676, 996
MnlI	CCTC	6 cut(s)	93, 225, 365, 376, 842, 889
MroI	TCCGGA	1 cut(s)	368
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	4 cut(s)	783, 930, 1094, 1105
MslI	CAYNNNNRTG	4 cut(s)	18, 116, 964, 1034
MspCI	CTTAAG	1 cut(s)	782
MspI	CCGG	4 cut(s)	369, 692, 707, 809
MspR9I	CCNGG	2 cut(s)	213, 938
MunI	CAATTG	1 cut(s)	800
MvaI	CCWGG	2 cut(s)	213, 938
MwoI	GCNNNNNNNGC	3 cut(s)	659, 744, 905
NarI	GGCGCC	2 cut(s)	492, 660
NdeII	GATC	2 cut(s)	482, 525
NlaIII	CATG	6 cut(s)	653, 769, 793, 912, 989, 1028
NlaIV	GGNNCC	6 cut(s)	105, 484, 493, 661, 942, 983
NmeAIII	GCCGAG	2 cut(s)	295, 636
NmuCI	GTSAC	2 cut(s)	291, 306
NspI	RCATGY	2 cut(s)	653, 912
PaeI	GCATGC	1 cut(s)	912
PasI	CCCWGGG	1 cut(s)	937
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	381
PflFI	GACNNNGTC	1 cut(s)	986
PkrI	GCNGC	5 cut(s)	594, 597, 798, 877, 907
PleI	GAGTC	1 cut(s)	122
PluTI	GGCGCC	2 cut(s)	495, 663
PpsI	GAGTC	1 cut(s)	122
Ppu21I	YACGTR	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	941
PsiI	TTATAA	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	941
Psp6I	CCWGG	2 cut(s)	211, 936
PspGI	CCWGG	2 cut(s)	211, 936
PspN4I	GGNNCC	6 cut(s)	105, 484, 493, 661, 942, 983
PspPI	GGNCC	4 cut(s)	689, 941, 982, 1055
PspPPI	RGGWCCY	1 cut(s)	941
PstI	CTGCAG	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	482
PsyI	GACNNNGTC	1 cut(s)	986
RsaI	GTAC	3 cut(s)	456, 602, 770
RsaNI	GTAC	3 cut(s)	455, 601, 769
RseI	CAYNNNNRTG	4 cut(s)	18, 116, 964, 1034
SaqAI	TTAA	4 cut(s)	783, 930, 1094, 1105
SatI	GCNGC	5 cut(s)	593, 596, 797, 876, 906
Sau3AI	GATC	2 cut(s)	482, 525
Sau96I	GGNCC	4 cut(s)	689, 941, 982, 1055
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	213, 938
SduI	GDGCHC	1 cut(s)	971
SfaNI	GCATC	4 cut(s)	689, 968, 1038, 1079
SfcI	CTRYAG	2 cut(s)	255, 473
SfoI	GGCGCC	2 cut(s)	493, 661
SinI	GGWCC	2 cut(s)	941, 982
SmiMI	CAYNNNNRTG	4 cut(s)	18, 116, 964, 1034
SmlI	CTYRAG	1 cut(s)	782
SmoI	CTYRAG	1 cut(s)	782
SphI	GCATGC	1 cut(s)	912
Sse9I	AATT	9 cut(s)	154, 165, 184, 250, 404, 635, 668, 800, 1043
SsiI	CCGC	1 cut(s)	593
SspDI	GGCGCC	2 cut(s)	491, 659
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	211, 936
StyI	CCWWGG	2 cut(s)	177, 486
TaaI	ACNGT	4 cut(s)	291, 477, 850, 1084
TaiI	ACGT	2 cut(s)	120, 144
TaqI	TCGA	1 cut(s)	1050
TasI	AATT	9 cut(s)	154, 165, 184, 250, 404, 635, 668, 800, 1043
TatI	WGTACW	2 cut(s)	454, 768
TauI	GCSGC	1 cut(s)	595
TfiI	GAWTC	1 cut(s)	381
Tru1I	TTAA	4 cut(s)	783, 930, 1094, 1105
Tru9I	TTAA	4 cut(s)	783, 930, 1094, 1105
TscAI	CASTG	2 cut(s)	22, 853
TseFI	GTSAC	2 cut(s)	291, 306
TseI	GCWGC	4 cut(s)	595, 796, 875, 905
Tsp45I	GTSAC	2 cut(s)	291, 306
TspDTI	ATGAA	2 cut(s)	64, 789
TspGWI	ACGGA	1 cut(s)	900
TspRI	CASTG	2 cut(s)	22, 853
Tth111I	GACNNNGTC	1 cut(s)	986
Vha464I	CTTAAG	1 cut(s)	782
VpaK11BI	GGWCC	2 cut(s)	941, 982
XapI	RAATTY	5 cut(s)	165, 184, 250, 668, 1043
XceI	RCATGY	2 cut(s)	653, 912
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	1 cut(s)	69
ZraI	GACGTC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.