Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002678

Physical Location & Seq

Genomic Coordinates Reverse (-)

16383395 .. 16385392

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15010.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCTAAATGTTACACTAATGTTTTGCCTAAGGCTTTCTTCATCATTGTCTTTTCTCTCTTCACTTCTGGTTTCCTCGTCACTCCCTCGGAGGCTCAGATGGTTCCCGCCATATATGTGTTCGGAGACTCGTTAGTCGACGTTGGTAACAACGATTACCTAAAAATCTCTGTTTTCAAGGCAGATTTTCCTCATAATGGGGTTGATTATCCTGGCAAAGTAGCAACTGGGAGGTGGGGTAATGGAAAAAATTCTGCAGATTTTCTTGGGTTACCAACATCGCCACCGTATTTGTCACTTGTATCCAAGTCCAACAAGCGAAAAGCATCCTTCGTCAACGGAGTTAGCTTTGCCTCCGGAGGAGCTGGAATCTTCAACGGCTCAGATGAACAATATCGTCAGGCGATACCTTTGTCATACCAAGTAAACTACTACTCAGAAGTGCATCAAAACATTGGGCTACAACTAGGCTCCAAGGGCGCCAAGGACCATCTTTCAAAATCTCTGTTTCTCATTGTGATTGGAAGCAATGACATCTTCGGCTACTTTAGAAATTCCCAACTCCAAAATGAATACACGCTGCAGCAGTATGCCGATTTGATGGTATCGAATCTAAAGGAACAATTACAGAGAATGCATGCTCTAGGCGCGCAGAAATTTGTAGTTATAGGGACTGGGCCAGTTGGCTGCTGTCCGGCGCAAAGGAATTCAAGTACAGGAGAGTGCAATGATGTTGAAAACTCGATGTCTGTCATGTACAATGAAGCCCTTAAGTCCATGTTGCAGCAATTGAAACCGGCGTTGGGCATAAGCTACACCCTCTTCGACACTTATACTGTATTGACTAACATCGTTCAAAACGCAGCTTCTTATGGATTTACAGAGGTTAGAGCTGCATGCTGTGGGATGGGGAAGCTTAACGCCGAGTTTCCTTGCACGCCAGTTTCATCCTTGTGCTCCAACAGGAGGAACCATGTATTCTGGGATTTTTACCATCCTACACAGGCAACTCATGGCATCATAACGGATAAACTTTTCGATGGCCCTTCAAAATACTCATCCCCAATGACTGTGAAGGAGTTAATTGCTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

365

Amino Acids

39.95

Weight (kDa)

8.49

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55050
fragaria_vesca	FvH4_3g19741 FvH4_3g19741 FvH4_3g19741 FvH4_3g19750 FvH4_3g19750
malus_domestica	MD03G1198600.v1.1 MD03G1198700.v1.1 MD03G1198800.v1.1 MD11G1214800.v1.1 MD11G1215100.v1.1
prunus_persica	Prupe.4G216200_v2.0.a1 Prupe.4G216300_v2.0.a1
pyrus_communis	pycom03g15010 pycom03g15020 pycom03g15030 pycom11g18920 pycom11g18940
rosa_chinensis	RchiOBHm_Chr5g0033121 RchiOBHm_Chr5g0033141
rosa_laevigata	RLG00000033449 RLG00000033450
rosa_multiflora	Rmu_sc0006107.1_g000006 Rmu_sc0006107.1_g000007
rosa_roxburghii	Rroxscaffold_1G00046830 Rroxscaffold_1G00046840 Rroxscaffold_1G00046950 Rroxscaffold_1G00046960
rosa_rugosa	Rorug05G0136800 Rorug05G0136900
rosa_samantha	Rh5AG228700 Rh5AG228800 Rh5BG229800 Rh5BG229900 Rh5CG257500 Rh5CG257600 Rh5DG234500 Rh5DG234600
rosa_wichuraiana	Rw5G020920 Rw5G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	479
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	650
AccIII	TCCGGA	1 cut(s)	356
AciI	CCGC	1 cut(s)	108
AcsI	RAATTY	4 cut(s)	250, 553, 656, 706
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	2 cut(s)	715, 758
AfiI	CCNNNNNNNGG	3 cut(s)	197, 803, 966
AflII	CTTAAG	1 cut(s)	770
AgsI	TTSAA	8 cut(s)	178, 376, 498, 711, 737, 793, 857, 1050
AjnI	CCWGG	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	785, 817
AluBI	AGCT	6 cut(s)	348, 365, 813, 866, 893, 916
AluI	AGCT	6 cut(s)	348, 365, 813, 866, 893, 916
Alw21I	GWGCWC	1 cut(s)	959
Alw26I	GTCTC	1 cut(s)	120
Aor13HI	TCCGGA	1 cut(s)	356
AoxI	GGCC	2 cut(s)	677, 1042
ApeKI	GCWGC	6 cut(s)	580, 583, 687, 784, 863, 893
ApoI	RAATTY	4 cut(s)	250, 553, 656, 706
Asp700I	GAANNNNTTC	1 cut(s)	250
AspLEI	GCGC	4 cut(s)	482, 650, 652, 700
AspS9I	GGNCC	3 cut(s)	487, 677, 1043
AvaII	GGWCC	1 cut(s)	487
AxyI	CCTNAGG	1 cut(s)	30
BaeI	ACNNNNGTAYC	2 cut(s)	398, 431
BanI	GGYRCC	1 cut(s)	479
Bbv12I	GWGCWC	1 cut(s)	959
BbvI	GCAGC	6 cut(s)	567, 595, 674, 796, 875, 880
BccI	CCATC	6 cut(s)	94, 498, 595, 901, 1002, 1034
BceAI	ACGGC	1 cut(s)	394
BciT130I	CCWGG	1 cut(s)	213
BciVI	GTATCC	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	2 cut(s)	467, 644
BfmI	CTRYAG	2 cut(s)	255, 581
BfoI	RGCGCY	1 cut(s)	483
BfrI	CTTAAG	1 cut(s)	770
BfuI	GTATCC	1 cut(s)	313
BisI	GCNGC	6 cut(s)	581, 584, 688, 785, 864, 894
BlsI	GCNGC	6 cut(s)	582, 585, 689, 786, 865, 895
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	487
BmgT120I	GGNCC	3 cut(s)	487, 677, 1043
BmiI	GGNNCC	4 cut(s)	105, 472, 481, 971
BmrFI	CCNGG	1 cut(s)	213
BmrI	ACTGGG	2 cut(s)	237, 684
BmsI	GCATC	3 cut(s)	335, 454, 1026
BmuI	ACTGGG	2 cut(s)	237, 684
BsaHI	GRCGYC	1 cut(s)	480
BsaJI	CCNNGG	3 cut(s)	87, 474, 483
BsaWI	WCCGGW	1 cut(s)	356
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 803, 966
Bse118I	RCCGGY	1 cut(s)	796
Bse1I	ACTGG	4 cut(s)	232, 679, 680, 941
Bse21I	CCTNAGG	1 cut(s)	30
Bse3DI	GCAATG	2 cut(s)	535, 733
BseAI	TCCGGA	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	3 cut(s)	87, 474, 483
BseGI	GGATG	5 cut(s)	326, 912, 947, 994, 1058
BseLI	CCNNNNNNNGG	3 cut(s)	197, 803, 966
BseMI	GCAATG	2 cut(s)	535, 733
BseMII	CTCAG	3 cut(s)	110, 396, 450
BseNI	ACTGG	4 cut(s)	232, 679, 680, 941
BsePI	GCGCGC	1 cut(s)	648
BseRI	GAGGAG	1 cut(s)	375
BseXI	GCAGC	6 cut(s)	567, 595, 674, 796, 875, 880
Bsh1236I	CGCG	1 cut(s)	650
BshFI	GGCC	2 cut(s)	679, 1044
BshNI	GGYRCC	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	959
BsiSI	CCGG	3 cut(s)	357, 695, 797
BslFI	GGGAC	1 cut(s)	685
BslI	CCNNNNNNNGG	3 cut(s)	197, 803, 966
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	685
BsmI	GAATGC	1 cut(s)	639
BsnI	GGCC	2 cut(s)	679, 1044
Bsp1286I	GDGCHC	1 cut(s)	959
Bsp13I	TCCGGA	1 cut(s)	356
Bsp1407I	TGTACA	1 cut(s)	756
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	2 cut(s)	679, 1044
BspCNI	CTCAG	3 cut(s)	109, 395, 449
BspEI	TCCGGA	1 cut(s)	356
BspFNI	CGCG	1 cut(s)	650
BspLI	GGNNCC	4 cut(s)	105, 472, 481, 971
BspMAI	CTGCAG	2 cut(s)	259, 585
BspT107I	GGYRCC	1 cut(s)	479
BspTI	CTTAAG	1 cut(s)	770
BsrDI	GCAATG	2 cut(s)	535, 733
BsrFI	RCCGGY	1 cut(s)	796
BsrGI	TGTACA	1 cut(s)	756
BsrI	ACTGG	4 cut(s)	232, 679, 680, 941
BssAI	RCCGGY	1 cut(s)	796
BssECI	CCNNGG	3 cut(s)	87, 474, 483
BssHII	GCGCGC	1 cut(s)	648
BssNI	GRCGYC	1 cut(s)	480
BssT1I	CCWWGG	2 cut(s)	474, 483
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	3 cut(s)	288, 838, 1072
Bst6I	CTCTTC	2 cut(s)	65, 827
BstACI	GRCGYC	1 cut(s)	480
BstAFI	CTTAAG	1 cut(s)	770
BstAUI	TGTACA	1 cut(s)	756
BstC8I	GCNNGC	4 cut(s)	639, 650, 898, 938
BstDEI	CTNAG	4 cut(s)	30, 96, 382, 436
BstEII	GGTNACC	1 cut(s)	270
BstF5I	GGATG	5 cut(s)	326, 912, 947, 994, 1058
BstFNI	CGCG	1 cut(s)	650
BstH2I	RGCGCY	1 cut(s)	483
BstHHI	GCGC	4 cut(s)	482, 650, 652, 700
BstMAI	GTCTC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	2 cut(s)	477, 647
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	2 cut(s)	641, 900
BstPI	GGTNACC	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	2 cut(s)	255, 581
BstUI	CGCG	1 cut(s)	650
BstV1I	GCAGC	6 cut(s)	567, 595, 674, 796, 875, 880
Bsu36I	CCTNAGG	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	679, 1044
BtgZI	GCGATG	1 cut(s)	264
BtsCI	GGATG	5 cut(s)	326, 912, 947, 994, 1058
Cac8I	GCNNGC	4 cut(s)	639, 650, 898, 938
CfoI	GCGC	4 cut(s)	482, 650, 652, 700
Cfr10I	RCCGGY	1 cut(s)	796
Cfr13I	GGNCC	3 cut(s)	487, 677, 1043
Csp6I	GTAC	2 cut(s)	714, 757
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	6 cut(s)	638, 754, 778, 897, 974, 1013
CviQI	GTAC	2 cut(s)	714, 757
DdeI	CTNAG	4 cut(s)	30, 96, 382, 436
DinI	GGCGCC	1 cut(s)	481
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eam1104I	CTCTTC	2 cut(s)	65, 827
EarI	CTCTTC	2 cut(s)	65, 827
Eco130I	CCWWGG	2 cut(s)	474, 483
Eco47I	GGWCC	1 cut(s)	487
Eco81I	CCTNAGG	1 cut(s)	30
Eco91I	GGTNACC	1 cut(s)	270
EcoO65I	GGTNACC	1 cut(s)	270
EcoRI	GAATTC	1 cut(s)	706
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	2 cut(s)	474, 483
EcoT22I	ATGCAT	1 cut(s)	639
EgeI	GGCGCC	1 cut(s)	481
EheI	GGCGCC	1 cut(s)	481
ErhI	CCWWGG	2 cut(s)	474, 483
FaeI	CATG	6 cut(s)	641, 757, 781, 900, 977, 1016
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	685
FatI	CATG	6 cut(s)	637, 753, 777, 896, 973, 1012
FauI	CCCGC	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	6 cut(s)	581, 584, 688, 785, 864, 894
FokI	GGATG	5 cut(s)	313, 919, 934, 981, 1045
Fsp4HI	GCNGC	6 cut(s)	581, 584, 688, 785, 864, 894
FspBI	CTAG	2 cut(s)	467, 644
GlaI	GCGC	4 cut(s)	481, 649, 651, 699
GluI	GCNGC	6 cut(s)	581, 584, 688, 785, 864, 894
HaeII	RGCGCY	1 cut(s)	483
HaeIII	GGCC	2 cut(s)	679, 1044
HapII	CCGG	3 cut(s)	357, 695, 797
HhaI	GCGC	4 cut(s)	482, 650, 652, 700
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	6 cut(s)	641, 757, 781, 900, 977, 1016
Hin6I	GCGC	4 cut(s)	480, 648, 650, 698
HinP1I	GCGC	4 cut(s)	480, 648, 650, 698
HincII	GTYRAC	2 cut(s)	139, 337
HindII	GTYRAC	2 cut(s)	139, 337
HindIII	AAGCTT	1 cut(s)	914
HinfI	GANTC	3 cut(s)	128, 369, 610
HpaII	CCGG	3 cut(s)	357, 695, 797
Hpy166II	GTNNAC	3 cut(s)	139, 337, 427
Hpy188I	TCNGA	5 cut(s)	91, 99, 125, 385, 439
Hpy188III	TCNNGA	1 cut(s)	357
Hpy8I	GTNNAC	3 cut(s)	139, 337, 427
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	340, 1056, 1069
HpyCH4III	ACNGT	3 cut(s)	288, 838, 1072
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	8 cut(s)	257, 445, 583, 637, 726, 784, 896, 936
HpyF10VI	GCNNNNNNNGC	2 cut(s)	477, 647
HpyF3I	CTNAG	4 cut(s)	30, 96, 382, 436
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	6 cut(s)	641, 757, 781, 900, 977, 1016
HspAI	GCGC	4 cut(s)	480, 648, 650, 698
KasI	GGCGCC	1 cut(s)	479
Kpn2I	TCCGGA	1 cut(s)	356
LmnI	GCTCC	3 cut(s)	362, 476, 962
Lsp1109I	GCAGC	6 cut(s)	567, 595, 674, 796, 875, 880
LweI	GCATC	3 cut(s)	335, 454, 1026
MaeI	CTAG	2 cut(s)	467, 644
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	5 cut(s)	11, 79, 146, 270, 294
MboII	GAAGA	5 cut(s)	31, 52, 364, 529, 814
MfeI	CAATTG	1 cut(s)	788
MhlI	GDGCHC	1 cut(s)	959
MluCI	AATT	7 cut(s)	250, 553, 623, 656, 706, 788, 1083
Mly113I	GGCGCC	1 cut(s)	480
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	2 cut(s)	336, 984
Mph1103I	ATGCAT	1 cut(s)	639
MroI	TCCGGA	1 cut(s)	356
MroXI	GAANNNNTTC	1 cut(s)	250
MseI	TTAA	3 cut(s)	771, 918, 1082
MslI	CAYNNNNRTG	2 cut(s)	116, 952
MspCI	CTTAAG	1 cut(s)	770
MspI	CCGG	3 cut(s)	357, 695, 797
MspR9I	CCNGG	1 cut(s)	213
MunI	CAATTG	1 cut(s)	788
Mva1269I	GAATGC	1 cut(s)	639
MvaI	CCWGG	1 cut(s)	213
MvnI	CGCG	1 cut(s)	650
MwoI	GCNNNNNNNGC	2 cut(s)	477, 647
NarI	GGCGCC	1 cut(s)	480
NlaIII	CATG	6 cut(s)	641, 757, 781, 900, 977, 1016
NlaIV	GGNNCC	4 cut(s)	105, 472, 481, 971
NmeAIII	GCCGAG	1 cut(s)	949
NmuCI	GTSAC	2 cut(s)	79, 294
NsiI	ATGCAT	1 cut(s)	639
NspI	RCATGY	2 cut(s)	641, 900
PaeI	GCATGC	2 cut(s)	641, 900
PauI	GCGCGC	1 cut(s)	648
PctI	GAATGC	1 cut(s)	639
PdmI	GAANNNNTTC	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	369, 610
PkrI	GCNGC	6 cut(s)	582, 585, 689, 786, 865, 895
PleI	GAGTC	1 cut(s)	122
PluTI	GGCGCC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	211
PspEI	GGTNACC	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	4 cut(s)	105, 472, 481, 971
PspPI	GGNCC	3 cut(s)	487, 677, 1043
PstI	CTGCAG	2 cut(s)	259, 585
PteI	GCGCGC	1 cut(s)	648
RsaI	GTAC	2 cut(s)	715, 758
RsaNI	GTAC	2 cut(s)	714, 757
RseI	CAYNNNNRTG	2 cut(s)	116, 952
SalI	GTCGAC	1 cut(s)	137
SaqAI	TTAA	3 cut(s)	771, 918, 1082
SatI	GCNGC	6 cut(s)	581, 584, 688, 785, 864, 894
Sau96I	GGNCC	3 cut(s)	487, 677, 1043
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	959
SfaNI	GCATC	3 cut(s)	335, 454, 1026
SfcI	CTRYAG	2 cut(s)	255, 581
SfoI	GGCGCC	1 cut(s)	481
SinI	GGWCC	1 cut(s)	487
SmiMI	CAYNNNNRTG	2 cut(s)	116, 952
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
SphI	GCATGC	2 cut(s)	641, 900
Sse9I	AATT	7 cut(s)	250, 553, 623, 656, 706, 788, 1083
SsiI	CCGC	1 cut(s)	108
SspDI	GGCGCC	1 cut(s)	479
SspMI	CTAG	2 cut(s)	467, 644
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	2 cut(s)	474, 483
TaaI	ACNGT	3 cut(s)	288, 838, 1072
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	6 cut(s)	138, 608, 743, 825, 1038, 1090
TasI	AATT	7 cut(s)	250, 553, 623, 656, 706, 788, 1083
TatI	WGTACW	2 cut(s)	713, 756
TfiI	GAWTC	2 cut(s)	369, 610
Tru1I	TTAA	3 cut(s)	771, 918, 1082
Tru9I	TTAA	3 cut(s)	771, 918, 1082
TseFI	GTSAC	2 cut(s)	79, 294
TseI	GCWGC	6 cut(s)	580, 583, 687, 784, 863, 893
Tsp45I	GTSAC	2 cut(s)	79, 294
TspDTI	ATGAA	5 cut(s)	31, 402, 585, 777, 936
TspGWI	ACGGA	2 cut(s)	354, 1040
Vha464I	CTTAAG	1 cut(s)	770
VpaK11BI	GGWCC	1 cut(s)	487
XapI	RAATTY	4 cut(s)	250, 553, 656, 706
XceI	RCATGY	2 cut(s)	641, 900
XmiI	GTMKAC	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	250
XspI	CTAG	2 cut(s)	467, 644
Zsp2I	ATGCAT	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.