Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002678

Physical Location & Seq

Genomic Coordinates Reverse (-)

21177295 .. 21179328

Gene Structure 2034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g18940.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTCCCTCAAACCATCACACAGAAACATCACATGCCAAATTAAGTTTGAGGGAGTTTTTAGACACGATTCATTCATAACCATGGCTAAACATCACACTGATGTTTTGCCAATGGCTTCCTTTGTCGTCGTCTTCTCTCTCTTCACTACTAGTTTCATCGTCGATCTCTCGGAAGGTCAGATGGTTCCGGCCATTTACGTGTTTGGAGACTCGTTAGCGGACGTCGGTAACAACAATTACCTAAAAATTTCTCTAGTCAAGGCAGATTTTCCTCATAATGGGGTTGATTATCCTGACAAAGTAGCAACGGGGAGGTTTGGTAATGGCAAGAATTCTGCAGACTTTCTTGGGTTACCACCGTCGACACCATATCTGGCACTTGTATCCAAGTCCAACAGGCGAAAAGTGTCCTTTGTCGATGGAGCTAGCTTCGCCTCCGGAGGAGCTGGAATCTTCAATGGCTCGGATGAACAATTTGTAAGTCGTCAGTCAATACCTTTGTCATACCAAGTAAACTACTACTCAGAAGTACATCAAAACATAGGGTTACAGTTAGGATCCGAGGGCACCAAAGACCATCTTTCAAAATCTCTGTTTCTTATTGTGATTGGAAGCAATGACATCTTCGACTACATTAAAAAATCCAAGCTCCAAAATGAATACACACCGCATCAGTACGCGGATTTAATGGCGTCGAATCTAAAGGAACAATTACAGAGAATACATGCTCTGGGTGCCCAAAAATTTGTAGTTGTTGGGACTGGGCCGGTTGGATGCTGTCCGTCGCAAAGGGATTCAAATACTGAAGAGTGCAATGATGGCGCAAACTCATTGTCTGTCATGTACAATGAAGCCCTTAAGTCCATGTTGCAGCAATTGAAACCGGCATTGGGCATAAGCTACACCCTCTTCGACACTTACAGCGTCTTGACTAACATTGTACAAAACGCAGCTTCTTACGGATTTACAGAGGTTAAAACTGCTTGCTGTGGGATTGGGCAGCTTAACGCCAAGGGTCCTTGCCTTCCAGTTGCATCCTTGTGCTCCAACAGAAGGGACCATGTCTTCTGGGATTTTTACCATCCAACACAGGCAACTCATGGCATCATAGTGGATAAACTTTTCGATGGCCCTTCAGAATACTCATCCCCAATGACTGTGAAGGAGTTAATTGCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

394

Amino Acids

43.07

Weight (kDa)

6.45

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55050
fragaria_vesca	FvH4_3g19741 FvH4_3g19741 FvH4_3g19741 FvH4_3g19750 FvH4_3g19750
malus_domestica	MD03G1198600.v1.1 MD03G1198700.v1.1 MD03G1198800.v1.1 MD11G1214800.v1.1 MD11G1215100.v1.1
prunus_persica	Prupe.4G216200_v2.0.a1 Prupe.4G216300_v2.0.a1
pyrus_communis	pycom03g15010 pycom03g15020 pycom03g15030 pycom11g18920 pycom11g18940
rosa_chinensis	RchiOBHm_Chr5g0033121 RchiOBHm_Chr5g0033141
rosa_laevigata	RLG00000033449 RLG00000033450
rosa_multiflora	Rmu_sc0006107.1_g000006 Rmu_sc0006107.1_g000007
rosa_roxburghii	Rroxscaffold_1G00046830 Rroxscaffold_1G00046840 Rroxscaffold_1G00046950 Rroxscaffold_1G00046960
rosa_rugosa	Rorug05G0136800 Rorug05G0136900
rosa_samantha	Rh5AG228700 Rh5AG228800 Rh5BG229800 Rh5BG229900 Rh5CG257500 Rh5CG257600 Rh5DG234500 Rh5DG234600
rosa_wichuraiana	Rw5G020920 Rw5G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
AccB1I	GGYRCC	2 cut(s)	566, 734
AccI	GTMKAC	1 cut(s)	362
AccII	CGCG	1 cut(s)	680
AccIII	TCCGGA	1 cut(s)	437
AciI	CCGC	3 cut(s)	218, 668, 680
AclWI	GGATC	2 cut(s)	552, 565
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	3 cut(s)	246, 331, 743
AcuI	CTGAAG	2 cut(s)	825, 1119
AcyI	GRCGYC	2 cut(s)	222, 692
AfaI	GTAC	4 cut(s)	531, 677, 845, 942
AfiI	CCNNNNNNNGG	3 cut(s)	278, 890, 1053
AflII	CTTAAG	1 cut(s)	857
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	4 cut(s)	457, 585, 798, 880
AhlI	ACTAGT	1 cut(s)	149
AjuI	GAANNNNNNNTTGG	2 cut(s)	872, 904
AluBI	AGCT	7 cut(s)	425, 429, 446, 649, 900, 953, 1003
AluI	AGCT	7 cut(s)	425, 429, 446, 649, 900, 953, 1003
Alw21I	GWGCWC	1 cut(s)	1046
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	2 cut(s)	552, 565
Aor13HI	TCCGGA	1 cut(s)	437
AoxI	GGCC	3 cut(s)	189, 764, 1129
ApeKI	GCWGC	3 cut(s)	871, 950, 1000
ApoI	RAATTY	3 cut(s)	246, 331, 743
ArsI	GACNNNNNNTTYG	2 cut(s)	818, 850
AspLEI	GCGC	1 cut(s)	824
AspS9I	GGNCC	4 cut(s)	764, 1016, 1057, 1130
AsuNHI	GCTAGC	1 cut(s)	425
AvaII	GGWCC	2 cut(s)	1016, 1057
BaeGI	GKGCMC	2 cut(s)	569, 739
BamHI	GGATCC	1 cut(s)	557
BanI	GGYRCC	2 cut(s)	566, 734
BbsI	GAAGAC	2 cut(s)	124, 1057
Bbv12I	GWGCWC	1 cut(s)	1046
BbvI	GCAGC	3 cut(s)	883, 962, 1012
BccI	CCATC	7 cut(s)	22, 175, 413, 585, 812, 1089, 1121
BciVI	GTATCC	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	201
BcuI	ACTAGT	1 cut(s)	149
BfaI	CTAG	3 cut(s)	150, 254, 426
BfmI	CTRYAG	1 cut(s)	336
BfrI	CTTAAG	1 cut(s)	857
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	3 cut(s)	872, 951, 1001
BlsI	GCNGC	3 cut(s)	873, 952, 1002
Bme18I	GGWCC	2 cut(s)	1016, 1057
BmgT120I	GGNCC	4 cut(s)	764, 1016, 1057, 1130
BmiI	GGNNCC	6 cut(s)	186, 559, 568, 736, 1017, 1058
BmrI	ACTGGG	1 cut(s)	771
BmsI	GCATC	4 cut(s)	679, 764, 1043, 1113
BmtI	GCTAGC	1 cut(s)	429
BmuI	ACTGGG	1 cut(s)	771
BpiI	GAAGAC	2 cut(s)	124, 1057
BsaAI	YACGTR	1 cut(s)	199
BsaHI	GRCGYC	2 cut(s)	222, 692
BsaJI	CCNNGG	3 cut(s)	81, 561, 1011
BsaWI	WCCGGW	1 cut(s)	437
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	3 cut(s)	278, 890, 1053
Bse118I	RCCGGY	2 cut(s)	766, 883
Bse1I	ACTGG	2 cut(s)	766, 1028
Bse3DI	GCAATG	2 cut(s)	622, 820
BseAI	TCCGGA	1 cut(s)	437
BseDI	CCNNGG	3 cut(s)	81, 561, 1011
BseGI	GGATG	5 cut(s)	472, 779, 1034, 1081, 1145
BseLI	CCNNNNNNNGG	3 cut(s)	278, 890, 1053
BseMI	GCAATG	2 cut(s)	622, 820
BseMII	CTCAG	1 cut(s)	537
BseNI	ACTGG	2 cut(s)	766, 1028
BseRI	GAGGAG	1 cut(s)	456
BseSI	GKGCMC	2 cut(s)	569, 739
BseXI	GCAGC	3 cut(s)	883, 962, 1012
Bsh1236I	CGCG	1 cut(s)	680
BshFI	GGCC	3 cut(s)	191, 766, 1131
BshNI	GGYRCC	2 cut(s)	566, 734
BsiHKAI	GWGCWC	1 cut(s)	1046
BsiSI	CCGG	4 cut(s)	188, 438, 767, 884
BslFI	GGGAC	2 cut(s)	772, 1070
BslI	CCNNNNNNNGG	3 cut(s)	278, 890, 1053
BsmAI	GTCTC	1 cut(s)	201
BsmFI	GGGAC	2 cut(s)	772, 1070
BsnI	GGCC	3 cut(s)	191, 766, 1131
Bsp1286I	GDGCHC	3 cut(s)	569, 739, 1046
Bsp13I	TCCGGA	1 cut(s)	437
Bsp1407I	TGTACA	2 cut(s)	843, 940
Bsp143I	GATC	2 cut(s)	163, 557
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	3 cut(s)	218, 668, 680
BspANI	GGCC	3 cut(s)	191, 766, 1131
BspCNI	CTCAG	1 cut(s)	536
BspEI	TCCGGA	1 cut(s)	437
BspFNI	CGCG	1 cut(s)	680
BspLI	GGNNCC	6 cut(s)	186, 559, 568, 736, 1017, 1058
BspMAI	CTGCAG	1 cut(s)	340
BspOI	GCTAGC	1 cut(s)	429
BspPI	GGATC	2 cut(s)	552, 565
BspT107I	GGYRCC	2 cut(s)	566, 734
BspTI	CTTAAG	1 cut(s)	857
BsrDI	GCAATG	2 cut(s)	622, 820
BsrFI	RCCGGY	2 cut(s)	766, 883
BsrGI	TGTACA	2 cut(s)	843, 940
BsrI	ACTGG	2 cut(s)	766, 1028
BssAI	RCCGGY	2 cut(s)	766, 883
BssECI	CCNNGG	3 cut(s)	81, 561, 1011
BssMI	GATC	2 cut(s)	163, 557
BssNI	GRCGYC	2 cut(s)	222, 692
BssT1I	CCWWGG	2 cut(s)	81, 1011
Bst4CI	ACNGT	3 cut(s)	360, 552, 1159
Bst6I	CTCTTC	3 cut(s)	146, 801, 914
BstACI	GRCGYC	2 cut(s)	222, 692
BstAFI	CTTAAG	1 cut(s)	857
BstAUI	TGTACA	2 cut(s)	843, 940
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	2 cut(s)	427, 985
BstDEI	CTNAG	1 cut(s)	523
BstDSI	CCRYGG	1 cut(s)	81
BstEII	GGTNACC	1 cut(s)	351
BstF5I	GGATG	5 cut(s)	472, 779, 1034, 1081, 1145
BstFNI	CGCG	1 cut(s)	680
BstHHI	GCGC	1 cut(s)	824
BstKTI	GATC	2 cut(s)	166, 560
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	2 cut(s)	163, 557
BstMWI	GCNNNNNNNGC	3 cut(s)	431, 734, 819
BstNSI	RCATGY	2 cut(s)	36, 728
BstPI	GGTNACC	1 cut(s)	351
BstSFI	CTRYAG	1 cut(s)	336
BstSLI	GKGCMC	2 cut(s)	569, 739
BstUI	CGCG	1 cut(s)	680
BstV1I	GCAGC	3 cut(s)	883, 962, 1012
BstV2I	GAAGAC	2 cut(s)	124, 1057
BstX2I	RGATCY	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	557
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	3 cut(s)	191, 766, 1131
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	5 cut(s)	472, 779, 1034, 1081, 1145
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	2 cut(s)	427, 985
CfoI	GCGC	1 cut(s)	824
Cfr10I	RCCGGY	2 cut(s)	766, 883
Cfr13I	GGNCC	4 cut(s)	764, 1016, 1057, 1130
CseI	GACGC	2 cut(s)	681, 913
Csp6I	GTAC	4 cut(s)	530, 676, 844, 941
CviAII	CATG	7 cut(s)	33, 82, 725, 841, 865, 1061, 1100
CviQI	GTAC	4 cut(s)	530, 676, 844, 941
DdeI	CTNAG	1 cut(s)	523
DpnI	GATC	2 cut(s)	165, 559
DpnII	GATC	2 cut(s)	163, 557
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	3 cut(s)	146, 801, 914
EarI	CTCTTC	3 cut(s)	146, 801, 914
Eco130I	CCWWGG	2 cut(s)	81, 1011
Eco47I	GGWCC	2 cut(s)	1016, 1057
Eco57I	CTGAAG	2 cut(s)	825, 1119
Eco91I	GGTNACC	1 cut(s)	351
EcoO109I	RGGNCCY	1 cut(s)	1016
EcoO65I	GGTNACC	1 cut(s)	351
EcoRI	GAATTC	1 cut(s)	331
EcoT14I	CCWWGG	2 cut(s)	81, 1011
ErhI	CCWWGG	2 cut(s)	81, 1011
FaeI	CATG	7 cut(s)	36, 85, 728, 844, 868, 1064, 1103
FalI	AAGNNNNNCTT	2 cut(s)	564, 596
FaqI	GGGAC	2 cut(s)	772, 1070
FatI	CATG	7 cut(s)	32, 81, 724, 840, 864, 1060, 1099
FblI	GTMKAC	1 cut(s)	362
Fnu4HI	GCNGC	3 cut(s)	872, 951, 1001
FokI	GGATG	5 cut(s)	479, 786, 1021, 1068, 1132
Fsp4HI	GCNGC	3 cut(s)	872, 951, 1001
FspBI	CTAG	3 cut(s)	150, 254, 426
GlaI	GCGC	1 cut(s)	823
GluI	GCNGC	3 cut(s)	872, 951, 1001
HaeIII	GGCC	3 cut(s)	191, 766, 1131
HapII	CCGG	4 cut(s)	188, 438, 767, 884
HgaI	GACGC	2 cut(s)	681, 913
HhaI	GCGC	1 cut(s)	824
Hin1I	GRCGYC	2 cut(s)	222, 692
Hin1II	CATG	7 cut(s)	36, 85, 728, 844, 868, 1064, 1103
Hin6I	GCGC	1 cut(s)	822
HinP1I	GCGC	1 cut(s)	822
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HinfI	GANTC	5 cut(s)	68, 209, 450, 697, 794
HpaII	CCGG	4 cut(s)	188, 438, 767, 884
Hpy166II	GTNNAC	2 cut(s)	363, 514
Hpy188I	TCNGA	6 cut(s)	172, 180, 466, 526, 562, 1138
Hpy188III	TCNNGA	3 cut(s)	293, 438, 928
Hpy8I	GTNNAC	2 cut(s)	363, 514
Hpy99I	CGWCG	6 cut(s)	131, 164, 227, 364, 697, 787
HpyAV	CCTTC	5 cut(s)	167, 1034, 1047, 1143, 1156
HpyCH4III	ACNGT	3 cut(s)	360, 552, 1159
HpyCH4IV	ACGT	2 cut(s)	198, 222
HpyCH4V	TGCA	4 cut(s)	338, 813, 871, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	431, 734, 819
HpyF3I	CTNAG	1 cut(s)	523
HpySE526I	ACGT	2 cut(s)	198, 222
Hsp92I	GRCGYC	2 cut(s)	222, 692
Hsp92II	CATG	7 cut(s)	36, 85, 728, 844, 868, 1064, 1103
HspAI	GCGC	1 cut(s)	822
Kpn2I	TCCGGA	1 cut(s)	437
Kzo9I	GATC	2 cut(s)	163, 557
LmnI	GCTCC	4 cut(s)	422, 443, 654, 1049
Lsp1109I	GCAGC	3 cut(s)	883, 962, 1012
LweI	GCATC	4 cut(s)	679, 764, 1043, 1113
MaeI	CTAG	3 cut(s)	150, 254, 426
MaeII	ACGT	2 cut(s)	198, 222
MaeIII	GTNAC	3 cut(s)	227, 351, 546
MalI	GATC	2 cut(s)	165, 559
MboI	GATC	2 cut(s)	163, 557
MboII	GAAGA	7 cut(s)	124, 133, 445, 616, 818, 901, 1057
MfeI	CAATTG	1 cut(s)	875
MflI	RGATCY	1 cut(s)	557
MhlI	GDGCHC	3 cut(s)	569, 739, 1046
MluCI	AATT	9 cut(s)	39, 235, 246, 331, 473, 710, 743, 875, 1170
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	4 cut(s)	417, 751, 1071, 1109
MnlI	CCTC	9 cut(s)	17, 43, 282, 306, 434, 445, 556, 917, 964
MroI	TCCGGA	1 cut(s)	437
MseI	TTAA	7 cut(s)	42, 636, 686, 858, 975, 1005, 1169
MslI	CAYNNNNRTG	5 cut(s)	80, 99, 197, 1039, 1109
MspCI	CTTAAG	1 cut(s)	857
MspI	CCGG	4 cut(s)	188, 438, 767, 884
MunI	CAATTG	1 cut(s)	875
MvnI	CGCG	1 cut(s)	680
MwoI	GCNNNNNNNGC	3 cut(s)	431, 734, 819
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	2 cut(s)	163, 557
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	7 cut(s)	36, 85, 728, 844, 868, 1064, 1103
NlaIV	GGNNCC	6 cut(s)	186, 559, 568, 736, 1017, 1058
NspI	RCATGY	2 cut(s)	36, 728
PfeI	GAWTC	4 cut(s)	68, 450, 697, 794
PflFI	GACNNNGTC	1 cut(s)	1061
PkrI	GCNGC	3 cut(s)	873, 952, 1002
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
Ppu21I	YACGTR	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	1016
Psp5II	RGGWCCY	1 cut(s)	1016
PspEI	GGTNACC	1 cut(s)	351
PspN4I	GGNNCC	6 cut(s)	186, 559, 568, 736, 1017, 1058
PspPI	GGNCC	4 cut(s)	764, 1016, 1057, 1130
PspPPI	RGGWCCY	1 cut(s)	1016
PstI	CTGCAG	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	557
PsyI	GACNNNGTC	1 cut(s)	1061
RsaI	GTAC	4 cut(s)	531, 677, 845, 942
RsaNI	GTAC	4 cut(s)	530, 676, 844, 941
RseI	CAYNNNNRTG	5 cut(s)	80, 99, 197, 1039, 1109
SalI	GTCGAC	1 cut(s)	361
SaqAI	TTAA	7 cut(s)	42, 636, 686, 858, 975, 1005, 1169
SatI	GCNGC	3 cut(s)	872, 951, 1001
Sau3AI	GATC	2 cut(s)	163, 557
Sau96I	GGNCC	4 cut(s)	764, 1016, 1057, 1130
SchI	GAGTC	1 cut(s)	203
SduI	GDGCHC	3 cut(s)	569, 739, 1046
SfaNI	GCATC	4 cut(s)	679, 764, 1043, 1113
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	2 cut(s)	1016, 1057
SmiMI	CAYNNNNRTG	5 cut(s)	80, 99, 197, 1039, 1109
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
SpeI	ACTAGT	1 cut(s)	149
Sse9I	AATT	9 cut(s)	39, 235, 246, 331, 473, 710, 743, 875, 1170
SsiI	CCGC	3 cut(s)	218, 668, 680
SspMI	CTAG	3 cut(s)	150, 254, 426
StyI	CCWWGG	2 cut(s)	81, 1011
TaaI	ACNGT	3 cut(s)	360, 552, 1159
TaiI	ACGT	2 cut(s)	201, 225
TaqI	TCGA	7 cut(s)	162, 362, 417, 627, 695, 912, 1125
TasI	AATT	9 cut(s)	39, 235, 246, 331, 473, 710, 743, 875, 1170
TatI	WGTACW	3 cut(s)	529, 843, 940
TfiI	GAWTC	4 cut(s)	68, 450, 697, 794
Tru1I	TTAA	7 cut(s)	42, 636, 686, 858, 975, 1005, 1169
Tru9I	TTAA	7 cut(s)	42, 636, 686, 858, 975, 1005, 1169
TscAI	CASTG	1 cut(s)	103
TseI	GCWGC	3 cut(s)	871, 950, 1000
TspDTI	ATGAA	6 cut(s)	60, 64, 145, 483, 672, 864
TspGWI	ACGGA	2 cut(s)	771, 975
TspRI	CASTG	1 cut(s)	103
Tth111I	GACNNNGTC	1 cut(s)	1061
Vha464I	CTTAAG	1 cut(s)	857
VpaK11BI	GGWCC	2 cut(s)	1016, 1057
XapI	RAATTY	3 cut(s)	246, 331, 743
XceI	RCATGY	2 cut(s)	36, 728
XmiI	GTMKAC	1 cut(s)	362
XspI	CTAG	3 cut(s)	150, 254, 426
ZraI	GACGTC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.