Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006107.1

Orthogroup ID

OG0002678

Physical Location & Seq

Genomic Coordinates Reverse (-)

16125 .. 18962

Gene Structure 2838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006107.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

atgcaaaagcaatccctatctaacaagatcaatgggagtacgggatgccgtgaacaaagtgataacagtactagtatgagaataaatttcctaacagctgcatctgcaccttattatgatcgaatttatgatggagccccagatgaccagtcctccagtcaaattatactgtcttttgactcttctcagttttcacacacaaaagggcacagacacactcatttactatcctctttatgcataaaccaaactcaccaccgcctcacagaggctgcaaatagaaatagcatagtgttggctgtgactgagatcacaaacttcatctatacaatggcctgcaattccttccttccaagtttctgcgtcttcttgcttttcttgctgtacggggttttgtatacagttacggaggctcgtgtgattccggccatgtttgttttcggagactccctagtagatgtaggcaacaacaattacctcaggtattcatttgccaaagcaaactttcctcacaatggggtcgactttccgaccagaaaaccaaccggcaggttcggcaatggcaagaatgctgcagatcttattgctgagaaaatggggttgccgacaataccaccgtatctctccatgtcatccaaatcaaacaagagcattacacagttcctaaacggcgttaactttgcatctggagcttccaaaatcttaaacgacatagatccacaatatcccttttccatacctttggaaaaacaagtagactactatttggcagtgcataaagacctagcgcaagggctaggagcctccagagcacaaatttatttatcaaaatctctcttcctcattatcacgggaagcaatgacatctacaactactttgactcgttaagtaacagcacacaacagcagtacgtgaactccattgttctcatgttcaaagaacaagtgaagcggctgtatgattatggtgcacgcaaattctcgattgttggggttggggttatcggatgcacaccatcagaaaggaatgagcaggcggacagaaaatgcaatgaagatacaaatcgattgtcactcaagtacaatcaagcactcgtgtccatgttgaagaatttggcatcagagctcagaggcataaactactcctactttgatggttacagcgtcatgcagaacttcatccaaaaaccaacagcttatggattttctgaggttaaagctgcttgctgtggtcttgggaagctcaatgccgattctccttgcctgccatttgcgacttactgcaccaacagaagcaaccatctgttctgggacagaacgcatcctactgaggcagctcatcgcaagcttgtggattatatgctttatggtcctttacaatacacatttccactcaatgtgaaaaagctagctgccatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

473

Amino Acids

52.92

Weight (kDa)

8.88

Isoelectric Point (pI)

30.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55050
fragaria_vesca	FvH4_3g19741 FvH4_3g19741 FvH4_3g19741 FvH4_3g19750 FvH4_3g19750
malus_domestica	MD03G1198600.v1.1 MD03G1198700.v1.1 MD03G1198800.v1.1 MD11G1214800.v1.1 MD11G1215100.v1.1
prunus_persica	Prupe.4G216200_v2.0.a1 Prupe.4G216300_v2.0.a1
pyrus_communis	pycom03g15010 pycom03g15020 pycom03g15030 pycom11g18920 pycom11g18940
rosa_chinensis	RchiOBHm_Chr5g0033121 RchiOBHm_Chr5g0033141
rosa_laevigata	RLG00000033449 RLG00000033450
rosa_multiflora	Rmu_sc0006107.1_g000006 Rmu_sc0006107.1_g000007
rosa_roxburghii	Rroxscaffold_1G00046830 Rroxscaffold_1G00046840 Rroxscaffold_1G00046950 Rroxscaffold_1G00046960
rosa_rugosa	Rorug05G0136800 Rorug05G0136900
rosa_samantha	Rh5AG228700 Rh5AG228800 Rh5BG229800 Rh5BG229900 Rh5CG257500 Rh5CG257600 Rh5DG234500 Rh5DG234600
rosa_wichuraiana	Rw5G020920 Rw5G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	540
AccI	GTMKAC	3 cut(s)	398, 522, 756
AciI	CCGC	3 cut(s)	259, 952, 1037
AclWI	GGATC	1 cut(s)	710
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	5 cut(s)	85, 123, 816, 977, 1111
AfaI	GTAC	5 cut(s)	40, 70, 386, 911, 1082
AfiI	CCNNNNNNNGG	2 cut(s)	268, 515
AgsI	TTSAA	2 cut(s)	937, 1108
AhlI	ACTAGT	1 cut(s)	71
Alw21I	GWGCWC	3 cut(s)	814, 973, 1128
Alw26I	GTCTC	1 cut(s)	438
Alw44I	GTGCAC	1 cut(s)	969
AlwI	GGATC	1 cut(s)	710
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	333, 426
ApaLI	GTGCAC	1 cut(s)	969
ApeKI	GCWGC	6 cut(s)	98, 272, 572, 1220, 1334, 1412
ApoI	RAATTY	5 cut(s)	85, 123, 816, 977, 1111
ArsI	GACNNNNNNTTYG	2 cut(s)	1055, 1087
AspLEI	GCGC	1 cut(s)	790
AspS9I	GGNCC	1 cut(s)	1370
AsuHPI	GGTGA	1 cut(s)	245
AsuNHI	GCTAGC	1 cut(s)	1408
AvaII	GGWCC	1 cut(s)	1370
AxyI	CCTNAGG	1 cut(s)	479
BaeGI	GKGCMC	2 cut(s)	210, 973
BaeI	ACNNNNGTAYC	2 cut(s)	602, 635
BanII	GRGCYC	2 cut(s)	139, 1128
BauI	CACGAG	2 cut(s)	414, 1094
BbsI	GAAGAC	1 cut(s)	358
Bbv12I	GWGCWC	3 cut(s)	814, 973, 1128
BbvI	GCAGC	6 cut(s)	85, 259, 559, 1207, 1346, 1399
BccI	CCATC	4 cut(s)	125, 1024, 1148, 1308
BceAI	ACGGC	2 cut(s)	33, 685
BcoDI	GTCTC	1 cut(s)	438
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	5 cut(s)	72, 452, 785, 797, 1409
BfmI	CTRYAG	1 cut(s)	573
BfuAI	ACCTGC	1 cut(s)	540
BglII	AGATCT	1 cut(s)	577
BisI	GCNGC	7 cut(s)	99, 273, 573, 953, 1221, 1335, 1413
BlsI	GCNGC	7 cut(s)	100, 274, 574, 954, 1222, 1336, 1414
BmcAI	AGTACT	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	1370
BmgT120I	GGNCC	1 cut(s)	1370
BmiI	GGNNCC	2 cut(s)	136, 802
BmsI	GCATC	6 cut(s)	35, 110, 692, 998, 1127, 1330
BmtI	GCTAGC	1 cut(s)	1412
BpiI	GAAGAC	1 cut(s)	358
BpmI	CTGGAG	3 cut(s)	139, 708, 790
BpuEI	CTTGAG	1 cut(s)	1061
Bsa29I	ATCGAT	1 cut(s)	1066
BsaAI	YACGTR	1 cut(s)	913
BsaBI	GATNNNNATC	1 cut(s)	1062
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 902, 932
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 515
Bse118I	RCCGGY	1 cut(s)	545
Bse1I	ACTGG	2 cut(s)	148, 156
Bse21I	CCTNAGG	1 cut(s)	479
Bse3DI	GCAATG	3 cut(s)	565, 865, 1057
Bse8I	GATNNNNATC	1 cut(s)	1062
BseCI	ATCGAT	1 cut(s)	1066
BseGI	GGATG	5 cut(s)	50, 632, 1013, 1179, 1321
BseJI	GATNNNNATC	1 cut(s)	1062
BseLI	CCNNNNNNNGG	2 cut(s)	268, 515
BseMI	GCAATG	3 cut(s)	565, 865, 1057
BseMII	CTCAG	7 cut(s)	200, 297, 493, 579, 1141, 1200, 1320
BseNI	ACTGG	2 cut(s)	148, 156
BseSI	GKGCMC	2 cut(s)	210, 973
BseXI	GCAGC	6 cut(s)	85, 259, 559, 1207, 1346, 1399
BsgI	GTGCAG	2 cut(s)	90, 1267
BshFI	GGCC	2 cut(s)	335, 428
BshVI	ATCGAT	1 cut(s)	1066
BsiHKAI	GWGCWC	3 cut(s)	814, 973, 1128
BsiSI	CCGG	2 cut(s)	425, 546
BslFI	GGGAC	1 cut(s)	1325
BslI	CCNNNNNNNGG	2 cut(s)	268, 515
BsmAI	GTCTC	1 cut(s)	438
BsmFI	GGGAC	1 cut(s)	1325
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	2 cut(s)	335, 428
Bsp1286I	GDGCHC	5 cut(s)	139, 210, 814, 973, 1128
Bsp143I	GATC	5 cut(s)	27, 118, 309, 577, 715
BspACI	CCGC	3 cut(s)	259, 952, 1037
BspANI	GGCC	2 cut(s)	335, 428
BspCNI	CTCAG	7 cut(s)	199, 298, 492, 580, 1140, 1201, 1321
BspDI	ATCGAT	1 cut(s)	1066
BspLI	GGNNCC	2 cut(s)	136, 802
BspMAI	CTGCAG	1 cut(s)	577
BspMI	ACCTGC	1 cut(s)	540
BspOI	GCTAGC	1 cut(s)	1412
BspPI	GGATC	1 cut(s)	710
BsrDI	GCAATG	3 cut(s)	565, 865, 1057
BsrFI	RCCGGY	1 cut(s)	545
BsrI	ACTGG	2 cut(s)	148, 156
BssAI	RCCGGY	1 cut(s)	545
BssMI	GATC	5 cut(s)	27, 118, 309, 577, 715
BssNAI	GTATAC	1 cut(s)	399
BssSI	CACGAG	2 cut(s)	414, 1094
Bst1107I	GTATAC	1 cut(s)	399
Bst2BI	CACGAG	2 cut(s)	414, 1094
Bst4CI	ACNGT	5 cut(s)	68, 171, 403, 618, 660
Bst6I	CTCTTC	2 cut(s)	187, 842
BstBAI	YACGTR	1 cut(s)	913
BstC8I	GCNNGC	7 cut(s)	337, 973, 1035, 1225, 1265, 1346, 1410
BstDEI	CTNAG	7 cut(s)	186, 306, 479, 588, 1127, 1209, 1329
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	5 cut(s)	50, 632, 1013, 1179, 1321
BstHHI	GCGC	1 cut(s)	790
BstKTI	GATC	5 cut(s)	30, 121, 312, 580, 718
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	5 cut(s)	27, 118, 309, 577, 715
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 379, 555, 689, 809
BstSFI	CTRYAG	1 cut(s)	573
BstSLI	GKGCMC	2 cut(s)	210, 973
BstV1I	GCAGC	6 cut(s)	85, 259, 559, 1207, 1346, 1399
BstV2I	GAAGAC	1 cut(s)	358
BstX2I	RGATCY	2 cut(s)	577, 715
BstXI	CCANNNNNNTGG	1 cut(s)	742
BstYI	RGATCY	2 cut(s)	577, 715
BstZ17I	GTATAC	1 cut(s)	399
Bsu15I	ATCGAT	1 cut(s)	1066
Bsu36I	CCTNAGG	1 cut(s)	479
BsuRI	GGCC	2 cut(s)	335, 428
BsuTUI	ATCGAT	1 cut(s)	1066
BtgZI	GCGATG	1 cut(s)	1325
BtsCI	GGATG	5 cut(s)	50, 632, 1013, 1179, 1321
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	1 cut(s)	777
BveI	ACCTGC	1 cut(s)	540
Cac8I	GCNNGC	7 cut(s)	337, 973, 1035, 1225, 1265, 1346, 1410
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	1 cut(s)	790
Cfr10I	RCCGGY	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	1370
ClaI	ATCGAT	1 cut(s)	1066
CseI	GACGC	2 cut(s)	352, 1153
Csp6I	GTAC	5 cut(s)	39, 69, 385, 910, 1081
CviAII	CATG	5 cut(s)	430, 628, 931, 1102, 1168
CviQI	GTAC	5 cut(s)	39, 69, 385, 910, 1081
DdeI	CTNAG	7 cut(s)	186, 306, 479, 588, 1127, 1209, 1329
DpnI	GATC	5 cut(s)	29, 120, 311, 579, 717
DpnII	GATC	5 cut(s)	27, 118, 309, 577, 715
EaeI	YGGCCR	1 cut(s)	426
Eam1104I	CTCTTC	2 cut(s)	187, 842
EarI	CTCTTC	2 cut(s)	187, 842
EciI	GGCGGA	1 cut(s)	1052
Ecl136II	GAGCTC	1 cut(s)	1126
Eco24I	GRGCYC	2 cut(s)	139, 1128
Eco47I	GGWCC	1 cut(s)	1370
Eco53kI	GAGCTC	1 cut(s)	1126
Eco81I	CCTNAGG	1 cut(s)	479
EcoICRI	GAGCTC	1 cut(s)	1126
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoT22I	ATGCAT	1 cut(s)	242
EcoT38I	GRGCYC	2 cut(s)	139, 1128
FaeI	CATG	5 cut(s)	433, 631, 934, 1105, 1171
FaqI	GGGAC	1 cut(s)	1325
FatI	CATG	5 cut(s)	429, 627, 930, 1101, 1167
FblI	GTMKAC	3 cut(s)	398, 522, 756
Fnu4HI	GCNGC	7 cut(s)	99, 273, 573, 953, 1221, 1335, 1413
FokI	GGATG	5 cut(s)	57, 619, 1020, 1166, 1308
FriOI	GRGCYC	2 cut(s)	139, 1128
Fsp4HI	GCNGC	7 cut(s)	99, 273, 573, 953, 1221, 1335, 1413
FspBI	CTAG	5 cut(s)	72, 452, 785, 797, 1409
GlaI	GCGC	1 cut(s)	789
GluI	GCNGC	7 cut(s)	99, 273, 573, 953, 1221, 1335, 1413
GsuI	CTGGAG	3 cut(s)	139, 708, 790
HaeIII	GGCC	2 cut(s)	335, 428
HapII	CCGG	2 cut(s)	425, 546
HgaI	GACGC	2 cut(s)	352, 1153
HhaI	GCGC	1 cut(s)	790
Hin1II	CATG	5 cut(s)	433, 631, 934, 1105, 1171
Hin6I	GCGC	1 cut(s)	788
HinP1I	GCGC	1 cut(s)	788
HincII	GTYRAC	2 cut(s)	523, 676
HindII	GTYRAC	2 cut(s)	523, 676
HindIII	AAGCTT	1 cut(s)	1346
HinfI	GANTC	5 cut(s)	179, 421, 446, 881, 1253
HpaI	GTTAAC	1 cut(s)	676
HpaII	CCGG	2 cut(s)	425, 546
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	7 cut(s)	53, 399, 523, 676, 757, 916, 971
Hpy188I	TCNGA	7 cut(s)	443, 531, 1007, 1021, 1123, 1130, 1210
Hpy188III	TCNNGA	3 cut(s)	687, 807, 982
Hpy8I	GTNNAC	7 cut(s)	53, 399, 523, 676, 757, 916, 971
HpyAV	CCTTC	2 cut(s)	355, 359
HpyCH4III	ACNGT	5 cut(s)	68, 171, 403, 618, 660
HpyCH4IV	ACGT	1 cut(s)	912
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 379, 555, 689, 809
HpyF3I	CTNAG	7 cut(s)	186, 306, 479, 588, 1127, 1209, 1329
HpySE526I	ACGT	1 cut(s)	912
Hsp92II	CATG	5 cut(s)	433, 631, 934, 1105, 1171
HspAI	GCGC	1 cut(s)	788
KspAI	GTTAAC	1 cut(s)	676
Kzo9I	GATC	5 cut(s)	27, 118, 309, 577, 715
LmnI	GCTCC	3 cut(s)	134, 689, 800
Lsp1109I	GCAGC	6 cut(s)	85, 259, 559, 1207, 1346, 1399
LweI	GCATC	6 cut(s)	35, 110, 692, 998, 1127, 1330
MaeI	CTAG	5 cut(s)	72, 452, 785, 797, 1409
MaeII	ACGT	1 cut(s)	912
MaeIII	GTNAC	5 cut(s)	301, 403, 890, 1071, 1157
MalI	GATC	5 cut(s)	29, 120, 311, 579, 717
MboI	GATC	5 cut(s)	27, 118, 309, 577, 715
MboII	GAAGA	5 cut(s)	174, 358, 829, 1067, 1120
MflI	RGATCY	2 cut(s)	577, 715
MhlI	GDGCHC	5 cut(s)	139, 210, 814, 973, 1128
MluCI	AATT	8 cut(s)	85, 123, 162, 340, 472, 816, 977, 1111
MlyI	GAGTC	3 cut(s)	173, 440, 875
MmeI	TCCRAC	1 cut(s)	554
Mph1103I	ATGCAT	1 cut(s)	242
MseI	TTAA	4 cut(s)	675, 704, 887, 1215
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	2 cut(s)	425, 546
Mva1269I	GAATGC	1 cut(s)	574
MwoI	GCNNNNNNNGC	5 cut(s)	104, 379, 555, 689, 809
NdeII	GATC	5 cut(s)	27, 118, 309, 577, 715
NheI	GCTAGC	1 cut(s)	1408
NlaIII	CATG	5 cut(s)	433, 631, 934, 1105, 1171
NlaIV	GGNNCC	2 cut(s)	136, 802
NmuCI	GTSAC	2 cut(s)	301, 1071
NsiI	ATGCAT	1 cut(s)	242
PctI	GAATGC	1 cut(s)	574
PfeI	GAWTC	2 cut(s)	421, 1253
PkrI	GCNGC	7 cut(s)	100, 274, 574, 954, 1222, 1336, 1414
PleI	GAGTC	3 cut(s)	173, 440, 875
PpsI	GAGTC	3 cut(s)	173, 440, 875
Ppu21I	YACGTR	1 cut(s)	913
Psp124BI	GAGCTC	1 cut(s)	1128
PspN4I	GGNNCC	2 cut(s)	136, 802
PspPI	GGNCC	1 cut(s)	1370
PsrI	GAACNNNNNNTAC	2 cut(s)	1309, 1341
PstI	CTGCAG	1 cut(s)	577
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	2 cut(s)	577, 715
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	5 cut(s)	40, 70, 386, 911, 1082
RsaNI	GTAC	5 cut(s)	39, 69, 385, 910, 1081
SacI	GAGCTC	1 cut(s)	1128
SalI	GTCGAC	1 cut(s)	521
SaqAI	TTAA	4 cut(s)	675, 704, 887, 1215
SatI	GCNGC	7 cut(s)	99, 273, 573, 953, 1221, 1335, 1413
Sau3AI	GATC	5 cut(s)	27, 118, 309, 577, 715
Sau96I	GGNCC	1 cut(s)	1370
ScaI	AGTACT	1 cut(s)	70
SchI	GAGTC	3 cut(s)	173, 440, 875
SduI	GDGCHC	5 cut(s)	139, 210, 814, 973, 1128
SfaNI	GCATC	6 cut(s)	35, 110, 692, 998, 1127, 1330
SfcI	CTRYAG	1 cut(s)	573
SinI	GGWCC	1 cut(s)	1370
SmlI	CTYRAG	1 cut(s)	1076
SmoI	CTYRAG	1 cut(s)	1076
SpeI	ACTAGT	1 cut(s)	71
Sse9I	AATT	8 cut(s)	85, 123, 162, 340, 472, 816, 977, 1111
SsiI	CCGC	3 cut(s)	259, 952, 1037
SspMI	CTAG	5 cut(s)	72, 452, 785, 797, 1409
SstI	GAGCTC	1 cut(s)	1128
TaaI	ACNGT	5 cut(s)	68, 171, 403, 618, 660
TaiI	ACGT	1 cut(s)	915
TaqI	TCGA	4 cut(s)	121, 522, 983, 1066
TasI	AATT	8 cut(s)	85, 123, 162, 340, 472, 816, 977, 1111
TatI	WGTACW	2 cut(s)	68, 1080
TauI	GCSGC	1 cut(s)	955
TfiI	GAWTC	2 cut(s)	421, 1253
Tru1I	TTAA	4 cut(s)	675, 704, 887, 1215
Tru9I	TTAA	4 cut(s)	675, 704, 887, 1215
TscAI	CASTG	1 cut(s)	777
TseFI	GTSAC	2 cut(s)	301, 1071
TseI	GCWGC	6 cut(s)	98, 272, 572, 1220, 1334, 1412
Tsp45I	GTSAC	2 cut(s)	301, 1071
TspDTI	ATGAA	4 cut(s)	310, 477, 1068, 1168
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	1 cut(s)	777
VneI	GTGCAC	1 cut(s)	969
VpaK11BI	GGWCC	1 cut(s)	1370
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	5 cut(s)	85, 123, 816, 977, 1111
XmiI	GTMKAC	3 cut(s)	398, 522, 756
XspI	CTAG	5 cut(s)	72, 452, 785, 797, 1409
ZrmI	AGTACT	1 cut(s)	70
Zsp2I	ATGCAT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.