Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002678

Physical Location & Seq

Genomic Coordinates Reverse (-)

16391668 .. 16392445

Gene Structure 778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGTGTCGAATCTAAAGGAACAATTACAGAGAATACATGCTCTAGGCGCGCAAAAATTTGTAGTCATCGGGACCGGGCCGGTTGGATGCTGTCCGTCGCAAAGGAATTCAAGTACAGGAGAGTGCAATGATGGTGCAAACTCATTGTCTGTCATGTACAAGGAAGCCCTTAAGTCCATGTTGCAGCAATTGAAACCCGCGTTGGGCATAAGCTACACCCTCTTTGACACTTACACTATCTTGAATAACATCATTCAAAACCCCGCTTCTTACGGATTTACAGAGGTTAAAGCTGCATGCTGTGGGATTGGGAAGCGTAATGCCAAGGGTCCATGCACACCAATTTCATCTTTGTGCTCCAACAGGAGGGACCATGTCTTCTGGGATTTTTACCATCCTACACAGGCAACTCATGGCATCATAACGGATAAACTTTTCGATGGCCCTTCAGAATACTCATCCCCAATGACTGTGAAGGAGTTAATTGCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

165

Amino Acids

17.88

Weight (kDa)

8.47

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55050
fragaria_vesca	FvH4_3g19741 FvH4_3g19741 FvH4_3g19741 FvH4_3g19750 FvH4_3g19750
malus_domestica	MD03G1198600.v1.1 MD03G1198700.v1.1 MD03G1198800.v1.1 MD11G1214800.v1.1 MD11G1215100.v1.1
prunus_persica	Prupe.4G216200_v2.0.a1 Prupe.4G216300_v2.0.a1
pyrus_communis	pycom03g15010 pycom03g15020 pycom03g15030 pycom11g18920 pycom11g18940
rosa_chinensis	RchiOBHm_Chr5g0033121 RchiOBHm_Chr5g0033141
rosa_laevigata	RLG00000033449 RLG00000033450
rosa_multiflora	Rmu_sc0006107.1_g000006 Rmu_sc0006107.1_g000007
rosa_roxburghii	Rroxscaffold_1G00046830 Rroxscaffold_1G00046840 Rroxscaffold_1G00046950 Rroxscaffold_1G00046960
rosa_rugosa	Rorug05G0136800 Rorug05G0136900
rosa_samantha	Rh5AG228700 Rh5AG228800 Rh5BG229800 Rh5BG229900 Rh5CG257500 Rh5CG257600 Rh5DG234500 Rh5DG234600
rosa_wichuraiana	Rw5G020920 Rw5G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	50, 200
AciI	CCGC	2 cut(s)	198, 264
AcsI	RAATTY	2 cut(s)	56, 106
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	2 cut(s)	115, 158
AfiI	CCNNNNNNNGG	2 cut(s)	203, 366
AflII	CTTAAG	1 cut(s)	170
AgsI	TTSAA	4 cut(s)	111, 193, 244, 257
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	2 cut(s)	213, 293
AluI	AGCT	2 cut(s)	213, 293
Alw21I	GWGCWC	1 cut(s)	359
AoxI	GGCC	2 cut(s)	77, 442
ApeKI	GCWGC	2 cut(s)	184, 293
ApoI	RAATTY	2 cut(s)	56, 106
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AspLEI	GCGC	2 cut(s)	50, 52
AspS9I	GGNCC	5 cut(s)	72, 77, 329, 370, 443
AsuC2I	CCSGG	1 cut(s)	76
AvaII	GGWCC	3 cut(s)	72, 329, 370
BbsI	GAAGAC	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	196, 280
BccI	CCATC	3 cut(s)	125, 402, 434
BcnI	CCSGG	1 cut(s)	76
BfaI	CTAG	1 cut(s)	44
BfrI	CTTAAG	1 cut(s)	170
BisI	GCNGC	2 cut(s)	185, 294
BlsI	GCNGC	2 cut(s)	186, 295
Bme1390I	CCNGG	1 cut(s)	76
Bme18I	GGWCC	3 cut(s)	72, 329, 370
BmgT120I	GGNCC	5 cut(s)	72, 77, 329, 370, 443
BmiI	GGNNCC	3 cut(s)	73, 330, 371
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	2 cut(s)	77, 426
BpiI	GAAGAC	1 cut(s)	370
BpuMI	CCSGG	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 366
Bse118I	RCCGGY	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	3 cut(s)	92, 394, 458
BseLI	CCNNNNNNNGG	2 cut(s)	203, 366
BseMI	GCAATG	1 cut(s)	133
BsePI	GCGCGC	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	196, 280
Bsh1236I	CGCG	2 cut(s)	50, 200
BshFI	GGCC	2 cut(s)	79, 444
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	75, 80
BslFI	GGGAC	2 cut(s)	85, 383
BslI	CCNNNNNNNGG	2 cut(s)	203, 366
BsmFI	GGGAC	2 cut(s)	85, 383
BsnI	GGCC	2 cut(s)	79, 444
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp1407I	TGTACA	1 cut(s)	156
BspACI	CCGC	2 cut(s)	198, 264
BspANI	GGCC	2 cut(s)	79, 444
BspFNI	CGCG	2 cut(s)	50, 200
BspLI	GGNNCC	3 cut(s)	73, 330, 371
BspTI	CTTAAG	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	79
BsrGI	TGTACA	1 cut(s)	156
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	324
BssHII	GCGCGC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	472
BstAFI	CTTAAG	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	50, 298
BstF5I	GGATG	3 cut(s)	92, 394, 458
BstFNI	CGCG	2 cut(s)	50, 200
BstHHI	GCGC	2 cut(s)	50, 52
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNSI	RCATGY	2 cut(s)	41, 300
BstSCI	CCNGG	1 cut(s)	74
BstUI	CGCG	2 cut(s)	50, 200
BstV1I	GCAGC	2 cut(s)	196, 280
BstV2I	GAAGAC	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	79, 444
BtsCI	GGATG	3 cut(s)	92, 394, 458
Cac8I	GCNNGC	2 cut(s)	50, 298
CfoI	GCGC	2 cut(s)	50, 52
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	5 cut(s)	72, 77, 329, 370, 443
Csp6I	GTAC	2 cut(s)	114, 157
CviAII	CATG	7 cut(s)	38, 154, 178, 297, 333, 374, 413
CviJI	RGCY	5 cut(s)	79, 167, 213, 293, 444
CviKI_1	RGCY	5 cut(s)	79, 167, 213, 293, 444
CviQI	GTAC	2 cut(s)	114, 157
Eco130I	CCWWGG	1 cut(s)	324
Eco47I	GGWCC	3 cut(s)	72, 329, 370
Eco57I	CTGAAG	1 cut(s)	432
EcoRI	GAATTC	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	7 cut(s)	41, 157, 181, 300, 336, 377, 416
FaqI	GGGAC	2 cut(s)	85, 383
FatI	CATG	7 cut(s)	37, 153, 177, 296, 332, 373, 412
FauI	CCCGC	2 cut(s)	205, 271
Fnu4HI	GCNGC	2 cut(s)	185, 294
FokI	GGATG	3 cut(s)	99, 381, 445
Fsp4HI	GCNGC	2 cut(s)	185, 294
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	2 cut(s)	49, 51
GluI	GCNGC	2 cut(s)	185, 294
HaeIII	GGCC	2 cut(s)	79, 444
HapII	CCGG	2 cut(s)	75, 80
HhaI	GCGC	2 cut(s)	50, 52
Hin1II	CATG	7 cut(s)	41, 157, 181, 300, 336, 377, 416
Hin6I	GCGC	2 cut(s)	48, 50
HinP1I	GCGC	2 cut(s)	48, 50
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	2 cut(s)	75, 80
Hpy188I	TCNGA	1 cut(s)	451
Hpy188III	TCNNGA	2 cut(s)	70, 241
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	456, 469
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4V	TGCA	5 cut(s)	126, 137, 184, 296, 336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
Hsp92II	CATG	7 cut(s)	41, 157, 181, 300, 336, 377, 416
HspAI	GCGC	2 cut(s)	48, 50
LmnI	GCTCC	1 cut(s)	362
LpnPI	CCDG	6 cut(s)	88, 93, 102, 349, 367, 389
Lsp1109I	GCAGC	2 cut(s)	196, 280
LweI	GCATC	2 cut(s)	77, 426
MaeI	CTAG	1 cut(s)	44
MboII	GAAGA	1 cut(s)	370
MfeI	CAATTG	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	359
MluCI	AATT	6 cut(s)	23, 56, 106, 188, 342, 483
MmeI	TCCRAC	2 cut(s)	64, 384
MnlI	CCTC	3 cut(s)	230, 277, 360
MseI	TTAA	3 cut(s)	171, 288, 482
MslI	CAYNNNNRTG	1 cut(s)	352
MspCI	CTTAAG	1 cut(s)	170
MspI	CCGG	2 cut(s)	75, 80
MspR9I	CCNGG	1 cut(s)	76
MunI	CAATTG	1 cut(s)	188
MvnI	CGCG	2 cut(s)	50, 200
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	76
NlaIII	CATG	7 cut(s)	41, 157, 181, 300, 336, 377, 416
NlaIV	GGNNCC	3 cut(s)	73, 330, 371
NspI	RCATGY	2 cut(s)	41, 300
PaeI	GCATGC	1 cut(s)	300
PauI	GCGCGC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	10
PflFI	GACNNNGTC	1 cut(s)	374
PkrI	GCNGC	2 cut(s)	186, 295
PspN4I	GGNNCC	3 cut(s)	73, 330, 371
PspPI	GGNCC	5 cut(s)	72, 77, 329, 370, 443
PsyI	GACNNNGTC	1 cut(s)	374
PteI	GCGCGC	1 cut(s)	48
RsaI	GTAC	2 cut(s)	115, 158
RsaNI	GTAC	2 cut(s)	114, 157
RseI	CAYNNNNRTG	1 cut(s)	352
SaqAI	TTAA	3 cut(s)	171, 288, 482
SatI	GCNGC	2 cut(s)	185, 294
Sau96I	GGNCC	5 cut(s)	72, 77, 329, 370, 443
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	359
SetI	ASST	3 cut(s)	215, 288, 295
SfaNI	GCATC	2 cut(s)	77, 426
SinI	GGWCC	3 cut(s)	72, 329, 370
SmiMI	CAYNNNNRTG	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SphI	GCATGC	1 cut(s)	300
Sse9I	AATT	6 cut(s)	23, 56, 106, 188, 342, 483
SsiI	CCGC	2 cut(s)	198, 264
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	472
TaqI	TCGA	2 cut(s)	8, 438
TasI	AATT	6 cut(s)	23, 56, 106, 188, 342, 483
TatI	WGTACW	2 cut(s)	113, 156
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	3 cut(s)	171, 288, 482
Tru9I	TTAA	3 cut(s)	171, 288, 482
TseI	GCWGC	2 cut(s)	184, 293
TspDTI	ATGAA	1 cut(s)	336
TspGWI	ACGGA	3 cut(s)	84, 288, 440
Tth111I	GACNNNGTC	1 cut(s)	374
Vha464I	CTTAAG	1 cut(s)	170
VpaK11BI	GGWCC	3 cut(s)	72, 329, 370
XapI	RAATTY	2 cut(s)	56, 106
XceI	RCATGY	2 cut(s)	41, 300
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.