Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002678

Physical Location & Seq

Genomic Coordinates Reverse (-)

66403420 .. 66407700

Gene Structure 4281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGCCCCAAATGACCAGTCGTCCAGTCAAATTATACTGTCTTTTCAGTTTTCACACACAAAAGGACACAGACACACATTTACTTTCCTCTTTATGCATAAACCAAACTCACCACCGCCTCACAGAGGCTGCAAATAGAAATAGCATAGTGTTGGCTGTGAATGAGATCACAAACTTCATCCATACAATGGCCTGCAATTCCTTCCTTCCAAGTTTCTGCGTCTTCTTGCTTTTCTTGCTGTACGGGGTTTCGTATACAGTTACGGAGGCTCGTGTGATTCCGGCCATGTTTGTTTTCGGAGACTCCCTAGTAGATGTGGGCAACAACAATTACCTCAGGTATTCATTTGCCAAAGCAAACTTTCCTCACAATGGGATCGACTTTCCGACCAGAAAACCAACCGGCAGGTTCGGCAATGGCAAGAATGCTGCAGATCTTATTGCTGAGAAAATGGGGTTGCCGACAATACCACCATATCTCTCCATGTCATCCAAATCAAACAAGAGCATTACACAGTTCCTAAACGGCGTTAACTTTGCATCTGGAGCTTCCAAAATCTTAGACGACATAGATCCACAATATCGGCTGTATGATTATGGTGCACGCAAATTTTCGATTGTTGGGGTTGGGGTTATCGGATGCACACCATCAGAAAGGAATGAGCAGGTGGACAGAAAATGCAATGAAGATACAAATCGATTATCACTCAAGTACAATCAAGCACTCGTGTCCATGTTGAAGAATTTGGCATCAGAGCTCAGAGGCATAAACTACTCCTACTTTGATGGTTACAGCGTCATGCAGAACTTCATCCAAAAACCAACAGCTTATGGATTTTCTGAGGTTAAAGCTGCTTGCTGTGGTCTTGGGAAGCTCAATGCCGATGCTCCTTGCCTGCCATTTGCGACTTACTGCACCAACAGAAGCAACCATCTGTTCTGGGACAGAACGCATCCCACTGAGGCAGCTCATCGCAAGCTTGTGGATTATATGCTTTATGGTCCTTTACAATTCACATTTCCACTCAATGTGAAAAAGCTAGTTGCCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

351

Amino Acids

39.37

Weight (kDa)

8.89

Isoelectric Point (pI)

23.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	98 - 189	2.2e-06	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL	PF00657	195 - 331	3e-15	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55050
fragaria_vesca	FvH4_3g19741 FvH4_3g19741 FvH4_3g19741 FvH4_3g19750 FvH4_3g19750
malus_domestica	MD03G1198600.v1.1 MD03G1198700.v1.1 MD03G1198800.v1.1 MD11G1214800.v1.1 MD11G1215100.v1.1
prunus_persica	Prupe.4G216200_v2.0.a1 Prupe.4G216300_v2.0.a1
pyrus_communis	pycom03g15010 pycom03g15020 pycom03g15030 pycom11g18920 pycom11g18940
rosa_chinensis	RchiOBHm_Chr5g0033121 RchiOBHm_Chr5g0033141
rosa_laevigata	RLG00000033449 RLG00000033450
rosa_multiflora	Rmu_sc0006107.1_g000006 Rmu_sc0006107.1_g000007
rosa_roxburghii	Rroxscaffold_1G00046830 Rroxscaffold_1G00046840 Rroxscaffold_1G00046950 Rroxscaffold_1G00046960
rosa_rugosa	Rorug05G0136800 Rorug05G0136900
rosa_samantha	Rh5AG228700 Rh5AG228800 Rh5BG229800 Rh5BG229900 Rh5CG257500 Rh5CG257600 Rh5DG234500 Rh5DG234600
rosa_wichuraiana	Rw5G020920 Rw5G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	658
Acc36I	ACCTGC	2 cut(s)	399, 658
AccB7I	CCANNNNNTGG	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	257
AciI	CCGC	1 cut(s)	118
AclWI	GGATC	2 cut(s)	386, 569
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	2 cut(s)	611, 745
AfaI	GTAC	2 cut(s)	245, 716
AfiI	CCNNNNNNNGG	3 cut(s)	127, 190, 374
AgsI	TTSAA	1 cut(s)	742
AhdI	GACNNNNNGTC	1 cut(s)	21
AluBI	AGCT	8 cut(s)	551, 760, 830, 854, 877, 971, 982, 1042
AluI	AGCT	8 cut(s)	551, 760, 830, 854, 877, 971, 982, 1042
Alw21I	GWGCWC	2 cut(s)	607, 762
Alw26I	GTCTC	1 cut(s)	297
Alw44I	GTGCAC	1 cut(s)	603
AlwI	GGATC	2 cut(s)	386, 569
AlwNI	CAGNNNCTG	1 cut(s)	131
AoxI	GGCC	2 cut(s)	192, 285
ApaLI	GTGCAC	1 cut(s)	603
ApeKI	GCWGC	4 cut(s)	131, 431, 854, 968
ApoI	RAATTY	2 cut(s)	611, 745
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	1004
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	1004
AxyI	CCTNAGG	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	607
BanII	GRGCYC	2 cut(s)	9, 762
BauI	CACGAG	2 cut(s)	273, 728
BbsI	GAAGAC	1 cut(s)	217
Bbv12I	GWGCWC	2 cut(s)	607, 762
BbvI	GCAGC	4 cut(s)	118, 418, 841, 980
BccI	CCATC	3 cut(s)	658, 782, 942
BceAI	ACGGC	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	2 cut(s)	311, 1043
BfmI	CTRYAG	1 cut(s)	432
BfuAI	ACCTGC	2 cut(s)	399, 658
BglII	AGATCT	1 cut(s)	436
BisI	GCNGC	4 cut(s)	132, 432, 855, 969
BlsI	GCNGC	4 cut(s)	133, 433, 856, 970
Bme18I	GGWCC	1 cut(s)	1004
BmeRI	GACNNNNNGTC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	1004
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	5 cut(s)	551, 632, 761, 877, 964
BpiI	GAAGAC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	695
Bsa29I	ATCGAT	1 cut(s)	700
BsaBI	GATNNNNATC	1 cut(s)	696
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 190, 374
Bse118I	RCCGGY	1 cut(s)	404
Bse1I	ACTGG	2 cut(s)	18, 26
Bse21I	CCTNAGG	1 cut(s)	338
Bse3DI	GCAATG	2 cut(s)	424, 691
Bse8I	GATNNNNATC	1 cut(s)	696
BseCI	ATCGAT	1 cut(s)	700
BseGI	GGATG	5 cut(s)	180, 491, 647, 813, 955
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	3 cut(s)	127, 190, 374
BseMI	GCAATG	2 cut(s)	424, 691
BseMII	CTCAG	5 cut(s)	352, 438, 775, 834, 954
BseNI	ACTGG	2 cut(s)	18, 26
BseSI	GKGCMC	1 cut(s)	607
BseXI	GCAGC	4 cut(s)	118, 418, 841, 980
BsgI	GTGCAG	1 cut(s)	901
BshFI	GGCC	2 cut(s)	194, 287
BshVI	ATCGAT	1 cut(s)	700
BsiHKAI	GWGCWC	2 cut(s)	607, 762
BsiSI	CCGG	2 cut(s)	284, 405
BslFI	GGGAC	1 cut(s)	959
BslI	CCNNNNNNNGG	3 cut(s)	127, 190, 374
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	959
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	194, 287
Bsp1286I	GDGCHC	3 cut(s)	9, 607, 762
Bsp143I	GATC	4 cut(s)	168, 378, 436, 574
BspACI	CCGC	1 cut(s)	118
BspANI	GGCC	2 cut(s)	194, 287
BspCNI	CTCAG	5 cut(s)	351, 439, 774, 835, 955
BspDI	ATCGAT	1 cut(s)	700
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	436
BspMI	ACCTGC	2 cut(s)	399, 658
BspPI	GGATC	2 cut(s)	386, 569
BsrDI	GCAATG	2 cut(s)	424, 691
BsrFI	RCCGGY	1 cut(s)	404
BsrI	ACTGG	2 cut(s)	18, 26
BssAI	RCCGGY	1 cut(s)	404
BssMI	GATC	4 cut(s)	168, 378, 436, 574
BssNAI	GTATAC	1 cut(s)	258
BssSI	CACGAG	2 cut(s)	273, 728
Bst1107I	GTATAC	1 cut(s)	258
Bst2BI	CACGAG	2 cut(s)	273, 728
Bst4CI	ACNGT	3 cut(s)	41, 262, 519
BstC8I	GCNNGC	5 cut(s)	196, 607, 859, 899, 980
BstDEI	CTNAG	6 cut(s)	338, 447, 562, 761, 843, 963
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstF5I	GGATG	5 cut(s)	180, 491, 647, 813, 955
BstKTI	GATC	4 cut(s)	171, 381, 439, 577
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	4 cut(s)	168, 378, 436, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 414, 548
BstSFI	CTRYAG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	607
BstV1I	GCAGC	4 cut(s)	118, 418, 841, 980
BstV2I	GAAGAC	1 cut(s)	217
BstX2I	RGATCY	2 cut(s)	436, 574
BstYI	RGATCY	2 cut(s)	436, 574
BstZ17I	GTATAC	1 cut(s)	258
Bsu15I	ATCGAT	1 cut(s)	700
Bsu36I	CCTNAGG	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	194, 287
BsuTUI	ATCGAT	1 cut(s)	700
BtgZI	GCGATG	1 cut(s)	959
BtsCI	GGATG	5 cut(s)	180, 491, 647, 813, 955
BtsIMutI	CAGTG	1 cut(s)	960
BveI	ACCTGC	2 cut(s)	399, 658
Cac8I	GCNNGC	5 cut(s)	196, 607, 859, 899, 980
CaiI	CAGNNNCTG	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	1004
ClaI	ATCGAT	1 cut(s)	700
CseI	GACGC	2 cut(s)	211, 787
Csp6I	GTAC	2 cut(s)	244, 715
CviAII	CATG	4 cut(s)	289, 487, 736, 802
CviQI	GTAC	2 cut(s)	244, 715
DdeI	CTNAG	6 cut(s)	338, 447, 562, 761, 843, 963
DpnI	GATC	4 cut(s)	170, 380, 438, 576
DpnII	GATC	4 cut(s)	168, 378, 436, 574
DriI	GACNNNNNGTC	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	285
Eam1105I	GACNNNNNGTC	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	760
Eco24I	GRGCYC	2 cut(s)	9, 762
Eco47I	GGWCC	1 cut(s)	1004
Eco53kI	GAGCTC	1 cut(s)	760
Eco81I	CCTNAGG	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	760
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoT22I	ATGCAT	1 cut(s)	101
EcoT38I	GRGCYC	2 cut(s)	9, 762
FaeI	CATG	4 cut(s)	292, 490, 739, 805
FaqI	GGGAC	1 cut(s)	959
FatI	CATG	4 cut(s)	288, 486, 735, 801
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	4 cut(s)	132, 432, 855, 969
FokI	GGATG	5 cut(s)	167, 478, 654, 800, 942
FriOI	GRGCYC	2 cut(s)	9, 762
Fsp4HI	GCNGC	4 cut(s)	132, 432, 855, 969
FspBI	CTAG	2 cut(s)	311, 1043
GluI	GCNGC	4 cut(s)	132, 432, 855, 969
GsuI	CTGGAG	1 cut(s)	567
HaeIII	GGCC	2 cut(s)	194, 287
HapII	CCGG	2 cut(s)	284, 405
HgaI	GACGC	2 cut(s)	211, 787
Hin1II	CATG	4 cut(s)	292, 490, 739, 805
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HindIII	AAGCTT	1 cut(s)	980
HinfI	GANTC	2 cut(s)	280, 305
HpaI	GTTAAC	1 cut(s)	535
HpaII	CCGG	2 cut(s)	284, 405
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	4 cut(s)	258, 535, 605, 673
Hpy188I	TCNGA	7 cut(s)	302, 390, 641, 655, 757, 764, 844
Hpy188III	TCNNGA	1 cut(s)	546
Hpy8I	GTNNAC	4 cut(s)	258, 535, 605, 673
HpyAV	CCTTC	2 cut(s)	214, 218
HpyCH4III	ACNGT	3 cut(s)	41, 262, 519
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 414, 548
HpyF3I	CTNAG	6 cut(s)	338, 447, 562, 761, 843, 963
Hsp92II	CATG	4 cut(s)	292, 490, 739, 805
KspAI	GTTAAC	1 cut(s)	535
Kzo9I	GATC	4 cut(s)	168, 378, 436, 574
LmnI	GCTCC	3 cut(s)	4, 548, 895
Lsp1109I	GCAGC	4 cut(s)	118, 418, 841, 980
LweI	GCATC	5 cut(s)	551, 632, 761, 877, 964
MaeI	CTAG	2 cut(s)	311, 1043
MaeIII	GTNAC	2 cut(s)	262, 791
MalI	GATC	4 cut(s)	170, 380, 438, 576
MboI	GATC	4 cut(s)	168, 378, 436, 574
MboII	GAAGA	3 cut(s)	217, 701, 754
MflI	RGATCY	2 cut(s)	436, 574
MhlI	GDGCHC	3 cut(s)	9, 607, 762
MluCI	AATT	6 cut(s)	32, 199, 331, 611, 745, 1013
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	9 cut(s)	100, 121, 131, 262, 347, 378, 758, 838, 958
Mph1103I	ATGCAT	1 cut(s)	101
MseI	TTAA	2 cut(s)	534, 849
MspI	CCGG	2 cut(s)	284, 405
Mva1269I	GAATGC	1 cut(s)	433
MwoI	GCNNNNNNNGC	3 cut(s)	238, 414, 548
NdeII	GATC	4 cut(s)	168, 378, 436, 574
NlaIII	CATG	4 cut(s)	292, 490, 739, 805
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	101
PaqCI	CACCTGC	1 cut(s)	658
PctI	GAATGC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	280
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	4 cut(s)	133, 433, 856, 970
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	762
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	1004
PstI	CTGCAG	1 cut(s)	436
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	2 cut(s)	436, 574
RsaI	GTAC	2 cut(s)	245, 716
RsaNI	GTAC	2 cut(s)	244, 715
SacI	GAGCTC	1 cut(s)	762
SaqAI	TTAA	2 cut(s)	534, 849
SatI	GCNGC	4 cut(s)	132, 432, 855, 969
Sau3AI	GATC	4 cut(s)	168, 378, 436, 574
Sau96I	GGNCC	1 cut(s)	1004
SchI	GAGTC	1 cut(s)	299
SduI	GDGCHC	3 cut(s)	9, 607, 762
SfaNI	GCATC	5 cut(s)	551, 632, 761, 877, 964
SfcI	CTRYAG	1 cut(s)	432
SinI	GGWCC	1 cut(s)	1004
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	6 cut(s)	32, 199, 331, 611, 745, 1013
SsiI	CCGC	1 cut(s)	118
SspMI	CTAG	2 cut(s)	311, 1043
SstI	GAGCTC	1 cut(s)	762
TaaI	ACNGT	3 cut(s)	41, 262, 519
TaqI	TCGA	3 cut(s)	381, 617, 700
TasI	AATT	6 cut(s)	32, 199, 331, 611, 745, 1013
TatI	WGTACW	1 cut(s)	714
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	2 cut(s)	534, 849
Tru9I	TTAA	2 cut(s)	534, 849
TscAI	CASTG	1 cut(s)	967
TseI	GCWGC	4 cut(s)	131, 431, 854, 968
TspDTI	ATGAA	4 cut(s)	169, 336, 702, 802
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	967
Van91I	CCANNNNNTGG	1 cut(s)	190
VneI	GTGCAC	1 cut(s)	603
VpaK11BI	GGWCC	1 cut(s)	1004
XagI	CCTNNNNNAGG	1 cut(s)	125
XapI	RAATTY	2 cut(s)	611, 745
XmiI	GTMKAC	1 cut(s)	257
XspI	CTAG	2 cut(s)	311, 1043
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.