BONZAI 3-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1406 |
| AatII | GACGTC | 1 cut(s) | 177 |
| AciI | CCGC | 5 cut(s) | 48, 150, 839, 1164, 1346 |
| AclI | AACGTT | 1 cut(s) | 1296 |
| AclWI | GGATC | 8 cut(s) | 185, 408, 617, 948, 1037, 1070, 1356, 1519 |
| AcoI | YGGCCR | 2 cut(s) | 1324, 1666 |
| AcsI | RAATTY | 6 cut(s) | 391, 407, 575, 822, 877, 1093 |
| AcuI | CTGAAG | 2 cut(s) | 273, 705 |
| AcyI | GRCGYC | 2 cut(s) | 81, 174 |
| AfaI | GTAC | 4 cut(s) | 375, 1198, 1388, 1593 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 48, 60, 538, 1169 |
| AflII | CTTAAG | 1 cut(s) | 631 |
| AjnI | CCWGG | 2 cut(s) | 843, 1663 |
| AluBI | AGCT | 7 cut(s) | 232, 931, 969, 1000, 1343, 1577, 1660 |
| AluI | AGCT | 7 cut(s) | 232, 931, 969, 1000, 1343, 1577, 1660 |
| Alw26I | GTCTC | 1 cut(s) | 1578 |
| AlwI | GGATC | 8 cut(s) | 185, 408, 617, 948, 1037, 1070, 1356, 1519 |
| Ama87I | CYCGRG | 1 cut(s) | 134 |
| AoxI | GGCC | 7 cut(s) | 39, 51, 62, 925, 1324, 1666, 1723 |
| ApaI | GGGCCC | 1 cut(s) | 55 |
| ApeKI | GCWGC | 4 cut(s) | 325, 739, 1343, 1660 |
| ApoI | RAATTY | 6 cut(s) | 391, 407, 575, 822, 877, 1093 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 376, 408 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1131 |
| AspA2I | CCTAGG | 1 cut(s) | 59 |
| AspS9I | GGNCC | 8 cut(s) | 51, 52, 63, 102, 841, 925, 1310, 1544 |
| AsuC2I | CCSGG | 1 cut(s) | 533 |
| AsuHPI | GGTGA | 3 cut(s) | 211, 1465, 1702 |
| AvaI | CYCGRG | 1 cut(s) | 134 |
| AvaII | GGWCC | 4 cut(s) | 102, 841, 1310, 1544 |
| AvrII | CCTAGG | 1 cut(s) | 59 |
| BaeGI | GKGCMC | 1 cut(s) | 55 |
| BalI | TGGCCA | 2 cut(s) | 1326, 1668 |
| BanII | GRGCYC | 1 cut(s) | 55 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 742, 774 |
| BauI | CACGAG | 1 cut(s) | 1581 |
| BbsI | GAAGAC | 1 cut(s) | 1365 |
| BbvCI | CCTCAGC | 1 cut(s) | 537 |
| BbvI | GCAGC | 4 cut(s) | 337, 751, 1330, 1647 |
| BccI | CCATC | 4 cut(s) | 218, 313, 1406, 1738 |
| BceAI | ACGGC | 2 cut(s) | 26, 68 |
| BciT130I | CCWGG | 2 cut(s) | 845, 1665 |
| BciVI | GTATCC | 1 cut(s) | 751 |
| BcnI | CCSGG | 1 cut(s) | 533 |
| BcoDI | GTCTC | 1 cut(s) | 1578 |
| BfaI | CTAG | 5 cut(s) | 60, 233, 555, 642, 987 |
| BfmI | CTRYAG | 1 cut(s) | 1563 |
| BfrI | CTTAAG | 1 cut(s) | 631 |
| BfuI | GTATCC | 1 cut(s) | 751 |
| BglII | AGATCT | 1 cut(s) | 604 |
| BisI | GCNGC | 4 cut(s) | 326, 740, 1344, 1661 |
| BlnI | CCTAGG | 1 cut(s) | 59 |
| BlsI | GCNGC | 4 cut(s) | 327, 741, 1345, 1662 |
| BmcAI | AGTACT | 1 cut(s) | 1388 |
| Bme1390I | CCNGG | 3 cut(s) | 533, 845, 1665 |
| Bme18I | GGWCC | 4 cut(s) | 102, 841, 1310, 1544 |
| BmeT110I | CYCGRG | 1 cut(s) | 134 |
| BmgT120I | GGNCC | 8 cut(s) | 51, 52, 63, 102, 841, 925, 1310, 1544 |
| BmiI | GGNNCC | 3 cut(s) | 52, 53, 104 |
| BmrFI | CCNGG | 3 cut(s) | 533, 845, 1665 |
| BmsI | GCATC | 5 cut(s) | 161, 1272, 1435, 1469, 1522 |
| BpiI | GAAGAC | 1 cut(s) | 1365 |
| Bpu10I | CCTNAGC | 1 cut(s) | 537 |
| BpuMI | CCSGG | 1 cut(s) | 533 |
| BsaHI | GRCGYC | 2 cut(s) | 81, 174 |
| BsaJI | CCNNGG | 4 cut(s) | 59, 106, 195, 1692 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 48, 60, 538, 1169 |
| Bse118I | RCCGGY | 1 cut(s) | 1355 |
| Bse1I | ACTGG | 2 cut(s) | 722, 1669 |
| Bse3DI | GCAATG | 1 cut(s) | 802 |
| BseBI | CCWGG | 2 cut(s) | 845, 1665 |
| BseDI | CCNNGG | 4 cut(s) | 59, 106, 195, 1692 |
| BseGI | GGATG | 1 cut(s) | 1417 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 48, 60, 538, 1169 |
| BseMI | GCAATG | 1 cut(s) | 802 |
| BseMII | CTCAG | 2 cut(s) | 528, 722 |
| BseNI | ACTGG | 2 cut(s) | 722, 1669 |
| BseRI | GAGGAG | 1 cut(s) | 42 |
| BseSI | GKGCMC | 1 cut(s) | 55 |
| BseXI | GCAGC | 4 cut(s) | 337, 751, 1330, 1647 |
| BseYI | CCCAGC | 1 cut(s) | 54 |
| BsgI | GTGCAG | 1 cut(s) | 344 |
| BshFI | GGCC | 7 cut(s) | 41, 53, 64, 927, 1326, 1668, 1725 |
| BsiHKCI | CYCGRG | 1 cut(s) | 134 |
| BsiSI | CCGG | 2 cut(s) | 532, 1356 |
| BslFI | GGGAC | 1 cut(s) | 88 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 48, 60, 538, 1169 |
| BsmAI | GTCTC | 1 cut(s) | 1578 |
| BsmFI | GGGAC | 1 cut(s) | 88 |
| BsnI | GGCC | 7 cut(s) | 41, 53, 64, 927, 1326, 1668, 1725 |
| BsoBI | CYCGRG | 1 cut(s) | 134 |
| Bsp120I | GGGCCC | 1 cut(s) | 51 |
| Bsp1286I | GDGCHC | 1 cut(s) | 55 |
| Bsp1407I | TGTACA | 1 cut(s) | 1591 |
| Bsp19I | CCATGG | 3 cut(s) | 106, 195, 1692 |
| BspACI | CCGC | 5 cut(s) | 48, 150, 839, 1164, 1346 |
| BspANI | GGCC | 7 cut(s) | 41, 53, 64, 927, 1326, 1668, 1725 |
| BspCNI | CTCAG | 2 cut(s) | 529, 723 |
| BspHI | TCATGA | 1 cut(s) | 907 |
| BspLI | GGNNCC | 3 cut(s) | 52, 53, 104 |
| BspPI | GGATC | 8 cut(s) | 185, 408, 617, 948, 1037, 1070, 1356, 1519 |
| BspQI | GCTCTTC | 1 cut(s) | 1650 |
| BspTI | CTTAAG | 1 cut(s) | 631 |
| BsrDI | GCAATG | 1 cut(s) | 802 |
| BsrFI | RCCGGY | 1 cut(s) | 1355 |
| BsrGI | TGTACA | 1 cut(s) | 1591 |
| BsrI | ACTGG | 2 cut(s) | 722, 1669 |
| BssAI | RCCGGY | 1 cut(s) | 1355 |
| BssECI | CCNNGG | 4 cut(s) | 59, 106, 195, 1692 |
| BssNI | GRCGYC | 2 cut(s) | 81, 174 |
| BssSI | CACGAG | 1 cut(s) | 1581 |
| BssT1I | CCWWGG | 4 cut(s) | 59, 106, 195, 1692 |
| Bst2BI | CACGAG | 1 cut(s) | 1581 |
| Bst2UI | CCWGG | 2 cut(s) | 845, 1665 |
| Bst4CI | ACNGT | 6 cut(s) | 70, 529, 963, 1201, 1541, 1596 |
| Bst6I | CTCTTC | 1 cut(s) | 1650 |
| BstACI | GRCGYC | 2 cut(s) | 81, 174 |
| BstAFI | CTTAAG | 1 cut(s) | 631 |
| BstAUI | TGTACA | 1 cut(s) | 1591 |
| BstC8I | GCNNGC | 5 cut(s) | 929, 1107, 1234, 1357, 1723 |
| BstDEI | CTNAG | 2 cut(s) | 537, 731 |
| BstDSI | CCRYGG | 3 cut(s) | 106, 195, 1692 |
| BstF5I | GGATG | 1 cut(s) | 1417 |
| BstMAI | GTCTC | 1 cut(s) | 1578 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1352, 1624 |
| BstNI | CCWGG | 2 cut(s) | 845, 1665 |
| BstNSI | RCATGY | 1 cut(s) | 1687 |
| BstSCI | CCNGG | 3 cut(s) | 531, 843, 1663 |
| BstSFI | CTRYAG | 1 cut(s) | 1563 |
| BstSLI | GKGCMC | 1 cut(s) | 55 |
| BstV1I | GCAGC | 4 cut(s) | 337, 751, 1330, 1647 |
| BstV2I | GAAGAC | 1 cut(s) | 1365 |
| BstX2I | RGATCY | 4 cut(s) | 604, 1042, 1361, 1524 |
| BstYI | RGATCY | 4 cut(s) | 604, 1042, 1361, 1524 |
| BsuI | GTATCC | 1 cut(s) | 751 |
| BsuRI | GGCC | 7 cut(s) | 41, 53, 64, 927, 1326, 1668, 1725 |
| BtgI | CCRYGG | 3 cut(s) | 106, 195, 1692 |
| BtgZI | GCGATG | 1 cut(s) | 1619 |
| BtsCI | GGATG | 1 cut(s) | 1417 |
| BtsI | GCAGTG | 2 cut(s) | 1207, 1281 |
| BtsIMutI | CAGTG | 5 cut(s) | 386, 840, 1207, 1281, 1546 |
| Cac8I | GCNNGC | 5 cut(s) | 929, 1107, 1234, 1357, 1723 |
| CciI | TCATGA | 1 cut(s) | 907 |
| Cfr10I | RCCGGY | 1 cut(s) | 1355 |
| Cfr13I | GGNCC | 8 cut(s) | 51, 52, 63, 102, 841, 925, 1310, 1544 |
| CseI | GACGC | 1 cut(s) | 89 |
| Csp6I | GTAC | 4 cut(s) | 374, 1197, 1387, 1592 |
| CviQI | GTAC | 4 cut(s) | 374, 1197, 1387, 1592 |
| DdeI | CTNAG | 2 cut(s) | 537, 731 |
| DraI | TTTAAA | 1 cut(s) | 705 |
| EaeI | YGGCCR | 2 cut(s) | 1324, 1666 |
| Eam1104I | CTCTTC | 1 cut(s) | 1650 |
| EarI | CTCTTC | 1 cut(s) | 1650 |
| EciI | GGCGGA | 1 cut(s) | 854 |
| Eco130I | CCWWGG | 4 cut(s) | 59, 106, 195, 1692 |
| Eco24I | GRGCYC | 1 cut(s) | 55 |
| Eco47I | GGWCC | 4 cut(s) | 102, 841, 1310, 1544 |
| Eco57I | CTGAAG | 2 cut(s) | 273, 705 |
| Eco88I | CYCGRG | 1 cut(s) | 134 |
| EcoO109I | RGGNCCY | 2 cut(s) | 51, 102 |
| EcoRI | GAATTC | 1 cut(s) | 1093 |
| EcoRII | CCWGG | 2 cut(s) | 843, 1663 |
| EcoT14I | CCWWGG | 4 cut(s) | 59, 106, 195, 1692 |
| EcoT38I | GRGCYC | 1 cut(s) | 55 |
| ErhI | CCWWGG | 4 cut(s) | 59, 106, 195, 1692 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 396, 428, 610, 642 |
| FaqI | GGGAC | 1 cut(s) | 88 |
| FauI | CCCGC | 2 cut(s) | 41, 1171 |
| Fnu4HI | GCNGC | 4 cut(s) | 326, 740, 1344, 1661 |
| FokI | GGATG | 1 cut(s) | 1424 |
| FriOI | GRGCYC | 1 cut(s) | 55 |
| Fsp4HI | GCNGC | 4 cut(s) | 326, 740, 1344, 1661 |
| FspBI | CTAG | 5 cut(s) | 60, 233, 555, 642, 987 |
| GluI | GCNGC | 4 cut(s) | 326, 740, 1344, 1661 |
| GsaI | CCCAGC | 1 cut(s) | 58 |
| HaeIII | GGCC | 7 cut(s) | 41, 53, 64, 927, 1326, 1668, 1725 |
| HapII | CCGG | 2 cut(s) | 532, 1356 |
| HgaI | GACGC | 1 cut(s) | 89 |
| Hin1I | GRCGYC | 2 cut(s) | 81, 174 |
| HincII | GTYRAC | 2 cut(s) | 141, 1336 |
| HindII | GTYRAC | 2 cut(s) | 141, 1336 |
| HinfI | GANTC | 3 cut(s) | 274, 1058, 1416 |
| HpaI | GTTAAC | 2 cut(s) | 141, 1336 |
| HpaII | CCGG | 2 cut(s) | 532, 1356 |
| HphI | GGTGA | 3 cut(s) | 211, 1465, 1702 |
| Hpy166II | GTNNAC | 4 cut(s) | 73, 141, 1336, 1544 |
| Hpy188I | TCNGA | 3 cut(s) | 19, 439, 462 |
| Hpy188III | TCNNGA | 9 cut(s) | 170, 316, 404, 445, 642, 908, 974, 1055, 1433 |
| Hpy8I | GTNNAC | 4 cut(s) | 73, 141, 1336, 1544 |
| Hpy99I | CGWCG | 1 cut(s) | 83 |
| HpyAV | CCTTC | 8 cut(s) | 28, 413, 916, 949, 1244, 1253, 1439, 1723 |
| HpyCH4III | ACNGT | 6 cut(s) | 70, 529, 963, 1201, 1541, 1596 |
| HpyCH4IV | ACGT | 2 cut(s) | 174, 1296 |
| HpyCH4V | TGCA | 9 cut(s) | 305, 325, 678, 739, 1066, 1232, 1505, 1618, 1721 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1352, 1624 |
| HpyF3I | CTNAG | 2 cut(s) | 537, 731 |
| HpySE526I | ACGT | 2 cut(s) | 174, 1296 |
| Hsp92I | GRCGYC | 2 cut(s) | 81, 174 |
| KroI | GCCGGC | 1 cut(s) | 1355 |
| KroNI | GCCGGC | 1 cut(s) | 1357 |
| KspAI | GTTAAC | 2 cut(s) | 141, 1336 |
| LguI | GCTCTTC | 1 cut(s) | 1650 |
| Lsp1109I | GCAGC | 4 cut(s) | 337, 751, 1330, 1647 |
| LweI | GCATC | 5 cut(s) | 161, 1272, 1435, 1469, 1522 |
| MaeI | CTAG | 5 cut(s) | 60, 233, 555, 642, 987 |
| MaeII | ACGT | 2 cut(s) | 174, 1296 |
| MaeIII | GTNAC | 3 cut(s) | 175, 445, 1679 |
| MboII | GAAGA | 3 cut(s) | 1365, 1460, 1667 |
| MfeI | CAATTG | 2 cut(s) | 300, 944 |
| MflI | RGATCY | 4 cut(s) | 604, 1042, 1361, 1524 |
| MhlI | GDGCHC | 1 cut(s) | 55 |
| MlsI | TGGCCA | 2 cut(s) | 1326, 1668 |
| MluNI | TGGCCA | 2 cut(s) | 1326, 1668 |
| MmeI | TCCRAC | 4 cut(s) | 734, 914, 1401, 1471 |
| Mox20I | TGGCCA | 2 cut(s) | 1326, 1668 |
| MroNI | GCCGGC | 1 cut(s) | 1355 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1131 |
| MscI | TGGCCA | 2 cut(s) | 1326, 1668 |
| MseI | TTAA | 8 cut(s) | 140, 467, 473, 632, 704, 1002, 1335, 1676 |
| MslI | CAYNNNNRTG | 1 cut(s) | 345 |
| Msp20I | TGGCCA | 2 cut(s) | 1326, 1668 |
| MspA1I | CMGCKG | 1 cut(s) | 931 |
| MspCI | CTTAAG | 1 cut(s) | 631 |
| MspI | CCGG | 2 cut(s) | 532, 1356 |
| MspR9I | CCNGG | 3 cut(s) | 533, 845, 1665 |
| MunI | CAATTG | 2 cut(s) | 300, 944 |
| MvaI | CCWGG | 2 cut(s) | 845, 1665 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1352, 1624 |
| NaeI | GCCGGC | 1 cut(s) | 1357 |
| NciI | CCSGG | 1 cut(s) | 533 |
| NcoI | CCATGG | 3 cut(s) | 106, 195, 1692 |
| NgoMIV | GCCGGC | 1 cut(s) | 1355 |
| NlaIV | GGNNCC | 3 cut(s) | 52, 53, 104 |
| NmuCI | GTSAC | 2 cut(s) | 175, 445 |
| NspI | RCATGY | 1 cut(s) | 1687 |
| PaeR7I | CTCGAG | 1 cut(s) | 134 |
| PagI | TCATGA | 1 cut(s) | 907 |
| PciSI | GCTCTTC | 1 cut(s) | 1650 |
| PdiI | GCCGGC | 1 cut(s) | 1357 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1131 |
| PfeI | GAWTC | 3 cut(s) | 274, 1058, 1416 |
| PkrI | GCNGC | 4 cut(s) | 327, 741, 1345, 1662 |
| PpuMI | RGGWCCY | 1 cut(s) | 102 |
| PsiI | TTATAA | 1 cut(s) | 1406 |
| Psp1406I | AACGTT | 1 cut(s) | 1296 |
| Psp5II | RGGWCCY | 1 cut(s) | 102 |
| Psp6I | CCWGG | 2 cut(s) | 843, 1663 |
| PspFI | CCCAGC | 1 cut(s) | 54 |
| PspGI | CCWGG | 2 cut(s) | 843, 1663 |
| PspN4I | GGNNCC | 3 cut(s) | 52, 53, 104 |
| PspOMI | GGGCCC | 1 cut(s) | 51 |
| PspPI | GGNCC | 8 cut(s) | 51, 52, 63, 102, 841, 925, 1310, 1544 |
| PspPPI | RGGWCCY | 1 cut(s) | 102 |
| PspXI | VCTCGAGB | 1 cut(s) | 134 |
| PsuI | RGATCY | 4 cut(s) | 604, 1042, 1361, 1524 |
| PvuII | CAGCTG | 1 cut(s) | 931 |
| RsaI | GTAC | 4 cut(s) | 375, 1198, 1388, 1593 |
| RsaNI | GTAC | 4 cut(s) | 374, 1197, 1387, 1592 |
| RseI | CAYNNNNRTG | 1 cut(s) | 345 |
| SapI | GCTCTTC | 1 cut(s) | 1650 |
| SaqAI | TTAA | 8 cut(s) | 140, 467, 473, 632, 704, 1002, 1335, 1676 |
| SatI | GCNGC | 4 cut(s) | 326, 740, 1344, 1661 |
| Sau96I | GGNCC | 8 cut(s) | 51, 52, 63, 102, 841, 925, 1310, 1544 |
| ScaI | AGTACT | 1 cut(s) | 1388 |
| ScrFI | CCNGG | 3 cut(s) | 533, 845, 1665 |
| SduI | GDGCHC | 1 cut(s) | 55 |
| SfaNI | GCATC | 5 cut(s) | 161, 1272, 1435, 1469, 1522 |
| SfcI | CTRYAG | 1 cut(s) | 1563 |
| Sfr274I | CTCGAG | 1 cut(s) | 134 |
| SinI | GGWCC | 4 cut(s) | 102, 841, 1310, 1544 |
| SlaI | CTCGAG | 1 cut(s) | 134 |
| SmiI | ATTTAAAT | 1 cut(s) | 705 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 345 |
| SmlI | CTYRAG | 2 cut(s) | 134, 631 |
| SmoI | CTYRAG | 2 cut(s) | 134, 631 |
| SsiI | CCGC | 5 cut(s) | 48, 150, 839, 1164, 1346 |
| SspMI | CTAG | 5 cut(s) | 60, 233, 555, 642, 987 |
| StyD4I | CCNGG | 3 cut(s) | 531, 843, 1663 |
| StyI | CCWWGG | 4 cut(s) | 59, 106, 195, 1692 |
| SwaI | ATTTAAAT | 1 cut(s) | 705 |
| TaaI | ACNGT | 6 cut(s) | 70, 529, 963, 1201, 1541, 1596 |
| TaiI | ACGT | 2 cut(s) | 177, 1299 |
| TaqI | TCGA | 5 cut(s) | 135, 315, 580, 1048, 1530 |
| TatI | WGTACW | 2 cut(s) | 1386, 1591 |
| TfiI | GAWTC | 3 cut(s) | 274, 1058, 1416 |
| Tru1I | TTAA | 8 cut(s) | 140, 467, 473, 632, 704, 1002, 1335, 1676 |
| Tru9I | TTAA | 8 cut(s) | 140, 467, 473, 632, 704, 1002, 1335, 1676 |
| TscAI | CASTG | 5 cut(s) | 393, 840, 1214, 1288, 1546 |
| TseFI | GTSAC | 2 cut(s) | 175, 445 |
| TseI | GCWGC | 4 cut(s) | 325, 739, 1343, 1660 |
| Tsp45I | GTSAC | 2 cut(s) | 175, 445 |
| TspDTI | ATGAA | 2 cut(s) | 924, 997 |
| TspGWI | ACGGA | 1 cut(s) | 1424 |
| TspRI | CASTG | 5 cut(s) | 393, 840, 1214, 1288, 1546 |
| Vha464I | CTTAAG | 1 cut(s) | 631 |
| VpaK11BI | GGWCC | 4 cut(s) | 102, 841, 1310, 1544 |
| XapI | RAATTY | 6 cut(s) | 391, 407, 575, 822, 877, 1093 |
| XbaI | TCTAGA | 1 cut(s) | 641 |
| XceI | RCATGY | 1 cut(s) | 1687 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 812 |
| XhoI | CTCGAG | 1 cut(s) | 134 |
| XmaJI | CCTAGG | 1 cut(s) | 59 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1131 |
| XspI | CTAG | 5 cut(s) | 60, 233, 555, 642, 987 |
| ZraI | GACGTC | 1 cut(s) | 175 |
| ZrmI | AGTACT | 1 cut(s) | 1388 |