BONZAI 3-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1452 |
| AccBSI | CCGCTC | 1 cut(s) | 120 |
| AciI | CCGC | 3 cut(s) | 118, 514, 1520 |
| AclWI | GGATC | 5 cut(s) | 203, 426, 635, 963, 1085 |
| AcoI | YGGCCR | 1 cut(s) | 1099 |
| AcsI | RAATTY | 5 cut(s) | 425, 529, 593, 895, 1108 |
| AcuI | CTGAAG | 4 cut(s) | 291, 428, 576, 723 |
| AcyI | GRCGYC | 1 cut(s) | 99 |
| AfaI | GTAC | 2 cut(s) | 1403, 1608 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 48, 78, 1184 |
| AflII | CTTAAG | 2 cut(s) | 649, 1016 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 196 |
| AjiI | CACGTC | 1 cut(s) | 22 |
| AjnI | CCWGG | 2 cut(s) | 861, 1678 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 669, 701 |
| AluBI | AGCT | 6 cut(s) | 109, 250, 984, 1015, 1205, 1675 |
| AluI | AGCT | 6 cut(s) | 109, 250, 984, 1015, 1205, 1675 |
| Alw21I | GWGCWC | 1 cut(s) | 111 |
| Alw26I | GTCTC | 2 cut(s) | 1593, 1704 |
| AlwI | GGATC | 5 cut(s) | 203, 426, 635, 963, 1085 |
| Ama87I | CYCGRG | 1 cut(s) | 123 |
| AoxI | GGCC | 6 cut(s) | 39, 51, 68, 1099, 1339, 1582 |
| ApaI | GGGCCC | 1 cut(s) | 55 |
| ApeKI | GCWGC | 6 cut(s) | 343, 757, 1358, 1675, 1704, 1736 |
| ApoI | RAATTY | 5 cut(s) | 425, 529, 593, 895, 1108 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1146, 1269 |
| AspLEI | GCGC | 1 cut(s) | 1704 |
| AspS9I | GGNCC | 6 cut(s) | 51, 52, 69, 1211, 1325, 1340 |
| AsuHPI | GGTGA | 3 cut(s) | 904, 1480, 1717 |
| AvaI | CYCGRG | 1 cut(s) | 123 |
| AvaII | GGWCC | 2 cut(s) | 1211, 1325 |
| BaeGI | GKGCMC | 2 cut(s) | 55, 1303 |
| BanII | GRGCYC | 2 cut(s) | 55, 111 |
| Bbv12I | GWGCWC | 1 cut(s) | 111 |
| BbvI | GCAGC | 6 cut(s) | 355, 769, 1345, 1662, 1691, 1748 |
| BccI | CCATC | 6 cut(s) | 63, 80, 236, 916, 1232, 1421 |
| BceAI | ACGGC | 4 cut(s) | 26, 86, 1059, 1569 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1641, 1675 |
| BciT130I | CCWGG | 2 cut(s) | 863, 1680 |
| BciVI | GTATCC | 1 cut(s) | 1425 |
| BclI | TGATCA | 1 cut(s) | 1416 |
| BcoDI | GTCTC | 2 cut(s) | 1593, 1704 |
| BfaI | CTAG | 3 cut(s) | 260, 660, 1499 |
| BfmI | CTRYAG | 4 cut(s) | 1359, 1650, 1705, 1734 |
| BfrI | CTTAAG | 2 cut(s) | 649, 1016 |
| BfuAI | ACCTGC | 1 cut(s) | 1452 |
| BfuI | GTATCC | 1 cut(s) | 1425 |
| BisI | GCNGC | 6 cut(s) | 344, 758, 1359, 1676, 1705, 1737 |
| BlsI | GCNGC | 6 cut(s) | 345, 759, 1360, 1677, 1706, 1738 |
| BmcAI | AGTACT | 1 cut(s) | 1403 |
| Bme1390I | CCNGG | 2 cut(s) | 863, 1680 |
| Bme18I | GGWCC | 2 cut(s) | 1211, 1325 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 196 |
| BmeT110I | CYCGRG | 1 cut(s) | 123 |
| BmgBI | CACGTC | 1 cut(s) | 22 |
| BmgT120I | GGNCC | 6 cut(s) | 51, 52, 69, 1211, 1325, 1340 |
| BmiI | GGNNCC | 3 cut(s) | 52, 53, 1327 |
| BmrFI | CCNGG | 2 cut(s) | 863, 1680 |
| BmrI | ACTGGG | 1 cut(s) | 1337 |
| BmsI | GCATC | 5 cut(s) | 73, 1150, 1450, 1484, 1537 |
| BmuI | ACTGGG | 1 cut(s) | 1337 |
| BpmI | CTGGAG | 3 cut(s) | 272, 884, 1227 |
| BpuEI | CTTGAG | 1 cut(s) | 1711 |
| BsaHI | GRCGYC | 1 cut(s) | 99 |
| BsaJI | CCNNGG | 3 cut(s) | 42, 124, 213 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 669, 699, 1200, 1230 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 48, 78, 1184 |
| Bse118I | RCCGGY | 1 cut(s) | 1101 |
| Bse1I | ACTGG | 5 cut(s) | 296, 1002, 1255, 1296, 1343 |
| Bse3DI | GCAATG | 1 cut(s) | 820 |
| BseBI | CCWGG | 2 cut(s) | 863, 1680 |
| BseDI | CCNNGG | 3 cut(s) | 42, 124, 213 |
| BseGI | GGATG | 3 cut(s) | 88, 1243, 1432 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 48, 78, 1184 |
| BseMI | GCAATG | 1 cut(s) | 820 |
| BseMII | CTCAG | 1 cut(s) | 740 |
| BseNI | ACTGG | 5 cut(s) | 296, 1002, 1255, 1296, 1343 |
| BseSI | GKGCMC | 2 cut(s) | 55, 1303 |
| BseXI | GCAGC | 6 cut(s) | 355, 769, 1345, 1662, 1691, 1748 |
| BsgI | GTGCAG | 3 cut(s) | 125, 362, 1652 |
| BshFI | GGCC | 6 cut(s) | 41, 53, 70, 1101, 1341, 1584 |
| BsiHKAI | GWGCWC | 1 cut(s) | 111 |
| BsiHKCI | CYCGRG | 1 cut(s) | 123 |
| BsiSI | CCGG | 1 cut(s) | 1102 |
| BslFI | GGGAC | 1 cut(s) | 1715 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 48, 78, 1184 |
| BsmAI | GTCTC | 2 cut(s) | 1593, 1704 |
| BsmFI | GGGAC | 1 cut(s) | 1715 |
| BsnI | GGCC | 6 cut(s) | 41, 53, 70, 1101, 1341, 1584 |
| BsoBI | CYCGRG | 1 cut(s) | 123 |
| Bsp120I | GGGCCC | 1 cut(s) | 51 |
| Bsp1286I | GDGCHC | 3 cut(s) | 55, 111, 1303 |
| Bsp1407I | TGTACA | 1 cut(s) | 1606 |
| Bsp143I | GATC | 8 cut(s) | 184, 208, 418, 640, 955, 1090, 1416, 1480 |
| Bsp19I | CCATGG | 1 cut(s) | 213 |
| BspACI | CCGC | 3 cut(s) | 118, 514, 1520 |
| BspANI | GGCC | 6 cut(s) | 41, 53, 70, 1101, 1341, 1584 |
| BspCNI | CTCAG | 1 cut(s) | 741 |
| BspHI | TCATGA | 1 cut(s) | 922 |
| BspLI | GGNNCC | 3 cut(s) | 52, 53, 1327 |
| BspMAI | CTGCAG | 4 cut(s) | 1363, 1654, 1709, 1738 |
| BspMI | ACCTGC | 1 cut(s) | 1452 |
| BspPI | GGATC | 5 cut(s) | 203, 426, 635, 963, 1085 |
| BspQI | GCTCTTC | 1 cut(s) | 1665 |
| BspTI | CTTAAG | 2 cut(s) | 649, 1016 |
| BsrBI | CCGCTC | 1 cut(s) | 120 |
| BsrDI | GCAATG | 1 cut(s) | 820 |
| BsrFI | RCCGGY | 1 cut(s) | 1101 |
| BsrGI | TGTACA | 1 cut(s) | 1606 |
| BsrI | ACTGG | 5 cut(s) | 296, 1002, 1255, 1296, 1343 |
| BssAI | RCCGGY | 1 cut(s) | 1101 |
| BssECI | CCNNGG | 3 cut(s) | 42, 124, 213 |
| BssMI | GATC | 8 cut(s) | 184, 208, 418, 640, 955, 1090, 1416, 1480 |
| BssNI | GRCGYC | 1 cut(s) | 99 |
| BssT1I | CCWWGG | 1 cut(s) | 213 |
| Bst2UI | CCWGG | 2 cut(s) | 863, 1680 |
| Bst4CI | ACNGT | 6 cut(s) | 319, 547, 978, 1226, 1686, 1729 |
| Bst6I | CTCTTC | 1 cut(s) | 1665 |
| BstACI | GRCGYC | 1 cut(s) | 99 |
| BstAFI | CTTAAG | 2 cut(s) | 649, 1016 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1367 |
| BstAUI | TGTACA | 1 cut(s) | 1606 |
| BstC8I | GCNNGC | 4 cut(s) | 35, 39, 1122, 1372 |
| BstDEI | CTNAG | 1 cut(s) | 749 |
| BstDSI | CCRYGG | 2 cut(s) | 42, 213 |
| BstF5I | GGATG | 3 cut(s) | 88, 1243, 1432 |
| BstHHI | GCGC | 1 cut(s) | 1704 |
| BstKTI | GATC | 8 cut(s) | 187, 211, 421, 643, 958, 1093, 1419, 1483 |
| BstMAI | GTCTC | 2 cut(s) | 1593, 1704 |
| BstMBI | GATC | 8 cut(s) | 184, 208, 418, 640, 955, 1090, 1416, 1480 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 126, 1367 |
| BstNI | CCWGG | 2 cut(s) | 863, 1680 |
| BstNSI | RCATGY | 1 cut(s) | 1702 |
| BstSCI | CCNGG | 2 cut(s) | 861, 1678 |
| BstSFI | CTRYAG | 4 cut(s) | 1359, 1650, 1705, 1734 |
| BstSLI | GKGCMC | 2 cut(s) | 55, 1303 |
| BstV1I | GCAGC | 6 cut(s) | 355, 769, 1345, 1662, 1691, 1748 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 220 |
| BsuI | GTATCC | 1 cut(s) | 1425 |
| BsuRI | GGCC | 6 cut(s) | 41, 53, 70, 1101, 1341, 1584 |
| BtgI | CCRYGG | 2 cut(s) | 42, 213 |
| BtrI | CACGTC | 1 cut(s) | 22 |
| BtsCI | GGATG | 3 cut(s) | 88, 1243, 1432 |
| BtsI | GCAGTG | 1 cut(s) | 137 |
| BtsIMutI | CAGTG | 8 cut(s) | 137, 303, 543, 858, 1009, 1222, 1303, 1350 |
| BveI | ACCTGC | 1 cut(s) | 1452 |
| Cac8I | GCNNGC | 4 cut(s) | 35, 39, 1122, 1372 |
| CciI | TCATGA | 1 cut(s) | 922 |
| CfoI | GCGC | 1 cut(s) | 1704 |
| Cfr10I | RCCGGY | 1 cut(s) | 1101 |
| Cfr13I | GGNCC | 6 cut(s) | 51, 52, 69, 1211, 1325, 1340 |
| CseI | GACGC | 3 cut(s) | 107, 412, 1650 |
| Csp6I | GTAC | 2 cut(s) | 1402, 1607 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1318, 1353 |
| CviQI | GTAC | 2 cut(s) | 1402, 1607 |
| DdeI | CTNAG | 1 cut(s) | 749 |
| DpnI | GATC | 8 cut(s) | 186, 210, 420, 642, 957, 1092, 1418, 1482 |
| DpnII | GATC | 8 cut(s) | 184, 208, 418, 640, 955, 1090, 1416, 1480 |
| DraI | TTTAAA | 1 cut(s) | 723 |
| DriI | GACNNNNNGTC | 1 cut(s) | 196 |
| EaeI | YGGCCR | 1 cut(s) | 1099 |
| Eam1104I | CTCTTC | 1 cut(s) | 1665 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 196 |
| EarI | CTCTTC | 1 cut(s) | 1665 |
| Ecl136II | GAGCTC | 1 cut(s) | 109 |
| Eco130I | CCWWGG | 1 cut(s) | 213 |
| Eco24I | GRGCYC | 2 cut(s) | 55, 111 |
| Eco47I | GGWCC | 2 cut(s) | 1211, 1325 |
| Eco53kI | GAGCTC | 1 cut(s) | 109 |
| Eco57I | CTGAAG | 4 cut(s) | 291, 428, 576, 723 |
| Eco88I | CYCGRG | 1 cut(s) | 123 |
| EcoICRI | GAGCTC | 1 cut(s) | 109 |
| EcoO109I | RGGNCCY | 3 cut(s) | 51, 1211, 1325 |
| EcoRI | GAATTC | 1 cut(s) | 1108 |
| EcoRII | CCWGG | 2 cut(s) | 861, 1678 |
| EcoT14I | CCWWGG | 1 cut(s) | 213 |
| EcoT38I | GRGCYC | 2 cut(s) | 55, 111 |
| ErhI | CCWWGG | 1 cut(s) | 213 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 414, 446, 628, 660 |
| FaqI | GGGAC | 1 cut(s) | 1715 |
| FauI | CCCGC | 1 cut(s) | 507 |
| FbaI | TGATCA | 1 cut(s) | 1416 |
| Fnu4HI | GCNGC | 6 cut(s) | 344, 758, 1359, 1676, 1705, 1737 |
| FokI | GGATG | 3 cut(s) | 95, 1250, 1439 |
| FriOI | GRGCYC | 2 cut(s) | 55, 111 |
| Fsp4HI | GCNGC | 6 cut(s) | 344, 758, 1359, 1676, 1705, 1737 |
| FspBI | CTAG | 3 cut(s) | 260, 660, 1499 |
| GlaI | GCGC | 1 cut(s) | 1703 |
| GluI | GCNGC | 6 cut(s) | 344, 758, 1359, 1676, 1705, 1737 |
| GsuI | CTGGAG | 3 cut(s) | 272, 884, 1227 |
| HaeIII | GGCC | 6 cut(s) | 41, 53, 70, 1101, 1341, 1584 |
| HapII | CCGG | 1 cut(s) | 1102 |
| HgaI | GACGC | 3 cut(s) | 107, 412, 1650 |
| HhaI | GCGC | 1 cut(s) | 1704 |
| Hin1I | GRCGYC | 1 cut(s) | 99 |
| Hin6I | GCGC | 1 cut(s) | 1702 |
| HinP1I | GCGC | 1 cut(s) | 1702 |
| HincII | GTYRAC | 1 cut(s) | 1036 |
| HindII | GTYRAC | 1 cut(s) | 1036 |
| HinfI | GANTC | 5 cut(s) | 89, 292, 493, 1073, 1540 |
| HpaII | CCGG | 1 cut(s) | 1102 |
| HphI | GGTGA | 3 cut(s) | 904, 1480, 1717 |
| Hpy166II | GTNNAC | 2 cut(s) | 1036, 1640 |
| Hpy188I | TCNGA | 5 cut(s) | 19, 457, 536, 574, 1480 |
| Hpy8I | GTNNAC | 2 cut(s) | 1036, 1640 |
| Hpy99I | CGWCG | 2 cut(s) | 23, 101 |
| HpyAV | CCTTC | 3 cut(s) | 431, 1191, 1259 |
| HpyCH4III | ACNGT | 6 cut(s) | 319, 547, 978, 1226, 1686, 1729 |
| HpyCH4IV | ACGT | 1 cut(s) | 21 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 126, 1367 |
| HpyF3I | CTNAG | 1 cut(s) | 749 |
| HpySE526I | ACGT | 1 cut(s) | 21 |
| Hsp92I | GRCGYC | 1 cut(s) | 99 |
| HspAI | GCGC | 1 cut(s) | 1702 |
| Ksp22I | TGATCA | 1 cut(s) | 1416 |
| Kzo9I | GATC | 8 cut(s) | 184, 208, 418, 640, 955, 1090, 1416, 1480 |
| LguI | GCTCTTC | 1 cut(s) | 1665 |
| LmnI | GCTCC | 2 cut(s) | 125, 1756 |
| Lsp1109I | GCAGC | 6 cut(s) | 355, 769, 1345, 1662, 1691, 1748 |
| LweI | GCATC | 5 cut(s) | 73, 1150, 1450, 1484, 1537 |
| MaeI | CTAG | 3 cut(s) | 260, 660, 1499 |
| MaeII | ACGT | 1 cut(s) | 21 |
| MaeIII | GTNAC | 3 cut(s) | 188, 463, 1694 |
| MalI | GATC | 8 cut(s) | 186, 210, 420, 642, 957, 1092, 1418, 1482 |
| MbiI | CCGCTC | 1 cut(s) | 120 |
| MboI | GATC | 8 cut(s) | 184, 208, 418, 640, 955, 1090, 1416, 1480 |
| MboII | GAAGA | 6 cut(s) | 244, 569, 619, 903, 1475, 1682 |
| MfeI | CAATTG | 1 cut(s) | 608 |
| MhlI | GDGCHC | 3 cut(s) | 55, 111, 1303 |
| MlyI | GAGTC | 1 cut(s) | 83 |
| MmeI | TCCRAC | 3 cut(s) | 42, 393, 1486 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1146, 1269 |
| MseI | TTAA | 9 cut(s) | 114, 485, 591, 650, 722, 963, 1017, 1230, 1350 |
| MslI | CAYNNNNRTG | 3 cut(s) | 218, 363, 921 |
| MspA1I | CMGCKG | 1 cut(s) | 1205 |
| MspCI | CTTAAG | 2 cut(s) | 649, 1016 |
| MspI | CCGG | 1 cut(s) | 1102 |
| MspR9I | CCNGG | 2 cut(s) | 863, 1680 |
| MunI | CAATTG | 1 cut(s) | 608 |
| MvaI | CCWGG | 2 cut(s) | 863, 1680 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 126, 1367 |
| NcoI | CCATGG | 1 cut(s) | 213 |
| NdeII | GATC | 8 cut(s) | 184, 208, 418, 640, 955, 1090, 1416, 1480 |
| NlaIV | GGNNCC | 3 cut(s) | 52, 53, 1327 |
| NmuCI | GTSAC | 2 cut(s) | 188, 463 |
| NspI | RCATGY | 1 cut(s) | 1702 |
| PagI | TCATGA | 1 cut(s) | 922 |
| PciSI | GCTCTTC | 1 cut(s) | 1665 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1146, 1269 |
| PfeI | GAWTC | 4 cut(s) | 292, 493, 1073, 1540 |
| PkrI | GCNGC | 6 cut(s) | 345, 759, 1360, 1677, 1706, 1738 |
| PleI | GAGTC | 1 cut(s) | 83 |
| PpsI | GAGTC | 1 cut(s) | 83 |
| PpuMI | RGGWCCY | 2 cut(s) | 1211, 1325 |
| Psp124BI | GAGCTC | 1 cut(s) | 111 |
| Psp5II | RGGWCCY | 2 cut(s) | 1211, 1325 |
| Psp6I | CCWGG | 2 cut(s) | 861, 1678 |
| PspGI | CCWGG | 2 cut(s) | 861, 1678 |
| PspN4I | GGNNCC | 3 cut(s) | 52, 53, 1327 |
| PspOMI | GGGCCC | 1 cut(s) | 51 |
| PspPI | GGNCC | 6 cut(s) | 51, 52, 69, 1211, 1325, 1340 |
| PspPPI | RGGWCCY | 2 cut(s) | 1211, 1325 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1599, 1631 |
| PstI | CTGCAG | 4 cut(s) | 1363, 1654, 1709, 1738 |
| PvuII | CAGCTG | 1 cut(s) | 1205 |
| RsaI | GTAC | 2 cut(s) | 1403, 1608 |
| RsaNI | GTAC | 2 cut(s) | 1402, 1607 |
| RseI | CAYNNNNRTG | 3 cut(s) | 218, 363, 921 |
| SacI | GAGCTC | 1 cut(s) | 111 |
| SapI | GCTCTTC | 1 cut(s) | 1665 |
| SaqAI | TTAA | 9 cut(s) | 114, 485, 591, 650, 722, 963, 1017, 1230, 1350 |
| SatI | GCNGC | 6 cut(s) | 344, 758, 1359, 1676, 1705, 1737 |
| Sau3AI | GATC | 8 cut(s) | 184, 208, 418, 640, 955, 1090, 1416, 1480 |
| Sau96I | GGNCC | 6 cut(s) | 51, 52, 69, 1211, 1325, 1340 |
| ScaI | AGTACT | 1 cut(s) | 1403 |
| SchI | GAGTC | 1 cut(s) | 83 |
| ScrFI | CCNGG | 2 cut(s) | 863, 1680 |
| SduI | GDGCHC | 3 cut(s) | 55, 111, 1303 |
| SfaNI | GCATC | 5 cut(s) | 73, 1150, 1450, 1484, 1537 |
| SfcI | CTRYAG | 4 cut(s) | 1359, 1650, 1705, 1734 |
| SinI | GGWCC | 2 cut(s) | 1211, 1325 |
| SmiI | ATTTAAAT | 1 cut(s) | 723 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 218, 363, 921 |
| SmlI | CTYRAG | 3 cut(s) | 649, 1016, 1690 |
| SmoI | CTYRAG | 3 cut(s) | 649, 1016, 1690 |
| SsiI | CCGC | 3 cut(s) | 118, 514, 1520 |
| SspMI | CTAG | 3 cut(s) | 260, 660, 1499 |
| SstI | GAGCTC | 1 cut(s) | 111 |
| StyD4I | CCNGG | 2 cut(s) | 861, 1678 |
| StyI | CCWWGG | 1 cut(s) | 213 |
| SwaI | ATTTAAAT | 1 cut(s) | 723 |
| TaaI | ACNGT | 6 cut(s) | 319, 547, 978, 1226, 1686, 1729 |
| TaiI | ACGT | 1 cut(s) | 24 |
| TaqI | TCGA | 7 cut(s) | 153, 372, 478, 792, 990, 1545, 1668 |
| TatI | WGTACW | 2 cut(s) | 1401, 1606 |
| TfiI | GAWTC | 4 cut(s) | 292, 493, 1073, 1540 |
| Tru1I | TTAA | 9 cut(s) | 114, 485, 591, 650, 722, 963, 1017, 1230, 1350 |
| Tru9I | TTAA | 9 cut(s) | 114, 485, 591, 650, 722, 963, 1017, 1230, 1350 |
| TscAI | CASTG | 8 cut(s) | 144, 303, 550, 858, 1009, 1229, 1303, 1350 |
| TseFI | GTSAC | 2 cut(s) | 188, 463 |
| TseI | GCWGC | 6 cut(s) | 343, 757, 1358, 1675, 1704, 1736 |
| Tsp45I | GTSAC | 2 cut(s) | 188, 463 |
| TspDTI | ATGAA | 4 cut(s) | 312, 939, 1012, 1464 |
| TspGWI | ACGGA | 3 cut(s) | 1083, 1145, 1439 |
| TspRI | CASTG | 8 cut(s) | 144, 303, 550, 858, 1009, 1229, 1303, 1350 |
| Vha464I | CTTAAG | 2 cut(s) | 649, 1016 |
| VpaK11BI | GGWCC | 2 cut(s) | 1211, 1325 |
| XapI | RAATTY | 5 cut(s) | 425, 529, 593, 895, 1108 |
| XbaI | TCTAGA | 1 cut(s) | 659 |
| XceI | RCATGY | 1 cut(s) | 1702 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1146, 1269 |
| XspI | CTAG | 3 cut(s) | 260, 660, 1499 |
| ZrmI | AGTACT | 1 cut(s) | 1403 |