Rmu_sc0010297.1_g000006

BONZAI 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010297.1
OG0000862
Physical Location & Seq
Reverse (-)
35104 .. 37040
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010297.1_g000006.1.cds

Sequence Viewer

Length: 1098 bp
atgtttgtgcaggttttctatgttaaagttgaactgttgaaggatgagttttcgttgactgactcagagtgctttgatttcaacagcaatggcaatcatgttcttattgggaaacttcaaaaatcagtggccgagctggagagattatacaaagaaagaagtggggtgaatttcgtcattccatcttctcatggtcatgaaaaggtttcaaagggtcagttgtttgtggatcaatttaatgagaagcaacagttcagctttctcgattatatttccagtggatttgagcttaacttcatggttgcggttgactttacgggtaggcactgcatgatattttcaaagtgtttatcatttccaatgtatttgcatgacttgatactgaattttctcacagcttcaaatggaaaccctcaacaacatgattcattgcactacaatgatccatatggccggttgaattcttaccagcaggcaattactgaagttggggaagtcattcagttttatgatgctgacaaacggtttcctgcttggggctttggaggaaggacagctggaggacctgtatcgcactgttttaacttggatggaactgcaactggctttgaggttgagggagttcaaggcataatgactgcttatgccagtgccctacacaatgtttctctatcaggacccactttgtttggcccagtggttactagggctgcggagattgctggcaattctctattccacaacaacaataagtactatgatgggatacttacagacctgcaggaaacaacagatgctttggtgagggcatctgatcttcccctctcaattctaatagttggagtaggaagtgcagatttcaaacaaatggagattctcgatgctgacaatggaccgcgattatcgagttcaacaggtcgtgtggctaccagagacattgtacaatttgttcccatgagagaagtgcagagtgggcgcatttctgcagttcaatcgcttctcgaagagctgcctgtacagttcttgagttacatgcgctgcagagacatcatgcctctcactgtccgtgcagcccaatcatcagctccacaactttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009987 GO:0010118 GO:0010941 GO:0016020 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0090332
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 Copine

Protein Analysis

365

Amino Acids

40.52

Weight (kDa)

5.28

Isoelectric Point (pI)

37.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 786
AccII CGCG 1 cut(s) 898
AciI CCGC 3 cut(s) 305, 713, 896
AclWI GGATC 2 cut(s) 237, 437
AcoI YGGCCR 2 cut(s) 129, 451
AcsI RAATTY 3 cut(s) 169, 385, 460
AcuI CTGAAG 1 cut(s) 504
AfaI GTAC 3 cut(s) 755, 942, 1017
AfiI CCNNNNNNNGG 1 cut(s) 536
AluBI AGCT 7 cut(s) 136, 258, 289, 398, 557, 1009, 1085
AluI AGCT 7 cut(s) 136, 258, 289, 398, 557, 1009, 1085
Alw26I GTCTC 2 cut(s) 927, 1038
AlwI GGATC 2 cut(s) 237, 437
AoxI GGCC 3 cut(s) 129, 451, 691
ApeKI GCWGC 4 cut(s) 710, 1009, 1038, 1070
ApoI RAATTY 3 cut(s) 169, 385, 460
Asp700I GAANNNNTTC 1 cut(s) 498
AspLEI GCGC 2 cut(s) 978, 1038
AspS9I GGNCC 4 cut(s) 563, 677, 692, 893
AsuHPI GGTGA 2 cut(s) 178, 814
AvaII GGWCC 3 cut(s) 563, 677, 893
BaeGI GKGCMC 1 cut(s) 655
BbvI GCAGC 4 cut(s) 697, 996, 1025, 1082
BccI CCATC 3 cut(s) 190, 584, 755
BcgI CGANNNNNNTGC 2 cut(s) 975, 1009
BciVI GTATCC 1 cut(s) 759
BcoDI GTCTC 2 cut(s) 927, 1038
BfaI CTAG 1 cut(s) 705
BfmI CTRYAG 3 cut(s) 779, 984, 1039
BfuAI ACCTGC 1 cut(s) 786
BfuI GTATCC 1 cut(s) 759
BisI GCNGC 4 cut(s) 711, 1010, 1039, 1071
BlsI GCNGC 4 cut(s) 712, 1011, 1040, 1072
BmcAI AGTACT 1 cut(s) 755
Bme18I GGWCC 3 cut(s) 563, 677, 893
BmgT120I GGNCC 4 cut(s) 563, 677, 692, 893
BmiI GGNNCC 1 cut(s) 679
BmrI ACTGGG 1 cut(s) 689
BmsI GCATC 4 cut(s) 502, 784, 818, 871
BmuI ACTGGG 1 cut(s) 689
BpmI CTGGAG 2 cut(s) 158, 579
BpuEI CTTGAG 1 cut(s) 1045
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bsc4I CCNNNNNNNGG 1 cut(s) 536
Bse118I RCCGGY 1 cut(s) 453
Bse1I ACTGG 4 cut(s) 276, 607, 648, 695
Bse3DI GCAATG 2 cut(s) 94, 428
BseGI GGATG 2 cut(s) 49, 595
BseLI CCNNNNNNNGG 1 cut(s) 536
BseMI GCAATG 2 cut(s) 94, 428
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 4 cut(s) 276, 607, 648, 695
BseSI GKGCMC 1 cut(s) 655
BseXI GCAGC 4 cut(s) 697, 996, 1025, 1082
BsgI GTGCAG 4 cut(s) 29, 873, 986, 1089
Bsh1236I CGCG 1 cut(s) 898
BshFI GGCC 3 cut(s) 131, 453, 693
BsiSI CCGG 1 cut(s) 454
BslI CCNNNNNNNGG 1 cut(s) 536
BsmAI GTCTC 2 cut(s) 927, 1038
BsnI GGCC 3 cut(s) 131, 453, 693
Bsp1286I GDGCHC 1 cut(s) 655
Bsp1407I TGTACA 2 cut(s) 940, 1015
Bsp143I GATC 3 cut(s) 229, 442, 814
BspACI CCGC 3 cut(s) 305, 713, 896
BspANI GGCC 3 cut(s) 131, 453, 693
BspCNI CTCAG 1 cut(s) 77
BspFNI CGCG 1 cut(s) 898
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 679
BspMAI CTGCAG 3 cut(s) 783, 988, 1043
BspMI ACCTGC 1 cut(s) 786
BspPI GGATC 2 cut(s) 237, 437
BspQI GCTCTTC 1 cut(s) 999
BsrDI GCAATG 2 cut(s) 94, 428
BsrFI RCCGGY 1 cut(s) 453
BsrGI TGTACA 2 cut(s) 940, 1015
BsrI ACTGG 4 cut(s) 276, 607, 648, 695
BssAI RCCGGY 1 cut(s) 453
BssMI GATC 3 cut(s) 229, 442, 814
Bst4CI ACNGT 6 cut(s) 36, 252, 525, 578, 1020, 1063
Bst6I CTCTTC 1 cut(s) 999
BstAUI TGTACA 2 cut(s) 940, 1015
BstC8I GCNNGC 2 cut(s) 474, 724
BstDEI CTNAG 1 cut(s) 64
BstF5I GGATG 2 cut(s) 49, 595
BstFNI CGCG 1 cut(s) 898
BstHHI GCGC 2 cut(s) 978, 1038
BstKTI GATC 3 cut(s) 232, 445, 817
BstMAI GTCTC 2 cut(s) 927, 1038
BstMBI GATC 3 cut(s) 229, 442, 814
BstMWI GCNNNNNNNGC 2 cut(s) 719, 973
BstNSI RCATGY 1 cut(s) 1036
BstSFI CTRYAG 3 cut(s) 779, 984, 1039
BstSLI GKGCMC 1 cut(s) 655
BstUI CGCG 1 cut(s) 898
BstV1I GCAGC 4 cut(s) 697, 996, 1025, 1082
BsuI GTATCC 1 cut(s) 759
BsuRI GGCC 3 cut(s) 131, 453, 693
BtsCI GGATG 2 cut(s) 49, 595
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 7 cut(s) 132, 283, 325, 574, 655, 702, 1059
BveI ACCTGC 1 cut(s) 786
Cac8I GCNNGC 2 cut(s) 474, 724
CciI TCATGA 1 cut(s) 196
CfoI GCGC 2 cut(s) 978, 1038
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 4 cut(s) 563, 677, 692, 893
Csp6I GTAC 3 cut(s) 754, 941, 1016
CspCI CAANNNNNGTGG 2 cut(s) 670, 705
CviQI GTAC 3 cut(s) 754, 941, 1016
DdeI CTNAG 1 cut(s) 64
DpnI GATC 3 cut(s) 231, 444, 816
DpnII GATC 3 cut(s) 229, 442, 814
EaeI YGGCCR 2 cut(s) 129, 451
Eam1104I CTCTTC 1 cut(s) 999
EarI CTCTTC 1 cut(s) 999
Eco47I GGWCC 3 cut(s) 563, 677, 893
Eco57I CTGAAG 1 cut(s) 504
EcoO109I RGGNCCY 2 cut(s) 563, 677
EcoRI GAATTC 1 cut(s) 460
FauNDI CATATG 1 cut(s) 448
Fnu4HI GCNGC 4 cut(s) 711, 1010, 1039, 1071
FokI GGATG 2 cut(s) 56, 602
Fsp4HI GCNGC 4 cut(s) 711, 1010, 1039, 1071
FspBI CTAG 1 cut(s) 705
GlaI GCGC 2 cut(s) 977, 1037
GluI GCNGC 4 cut(s) 711, 1010, 1039, 1071
GsuI CTGGAG 2 cut(s) 158, 579
HaeIII GGCC 3 cut(s) 131, 453, 693
HapII CCGG 1 cut(s) 454
HhaI GCGC 2 cut(s) 978, 1038
Hin6I GCGC 2 cut(s) 976, 1036
HinP1I GCGC 2 cut(s) 976, 1036
HincII GTYRAC 2 cut(s) 57, 310
HindII GTYRAC 2 cut(s) 57, 310
HinfI GANTC 3 cut(s) 62, 425, 874
HpaII CCGG 1 cut(s) 454
HphI GGTGA 2 cut(s) 178, 814
Hpy166II GTNNAC 2 cut(s) 57, 310
Hpy188I TCNGA 2 cut(s) 67, 814
Hpy188III TCNNGA 6 cut(s) 197, 263, 675, 878, 1001, 1024
Hpy8I GTNNAC 2 cut(s) 57, 310
HpyAV CCTTC 2 cut(s) 34, 543
HpyCH4III ACNGT 6 cut(s) 36, 252, 525, 578, 1020, 1063
HpyF10VI GCNNNNNNNGC 2 cut(s) 719, 973
HpyF3I CTNAG 1 cut(s) 64
HspAI GCGC 2 cut(s) 976, 1036
Kzo9I GATC 3 cut(s) 229, 442, 814
LguI GCTCTTC 1 cut(s) 999
LmnI GCTCC 1 cut(s) 1090
Lsp1109I GCAGC 4 cut(s) 697, 996, 1025, 1082
LweI GCATC 4 cut(s) 502, 784, 818, 871
MaeI CTAG 1 cut(s) 705
MaeIII GTNAC 2 cut(s) 700, 1028
MalI GATC 3 cut(s) 231, 444, 816
MboI GATC 3 cut(s) 229, 442, 814
MboII GAAGA 3 cut(s) 177, 809, 1016
MhlI GDGCHC 1 cut(s) 655
MluCI AATT 8 cut(s) 169, 233, 385, 460, 477, 727, 828, 944
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 820
MnlI CCTC 8 cut(s) 423, 539, 554, 604, 610, 798, 833, 1065
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 4 cut(s) 24, 237, 291, 582
MslI CAYNNNNRTG 2 cut(s) 195, 438
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 1 cut(s) 454
MvnI CGCG 1 cut(s) 898
MwoI GCNNNNNNNGC 2 cut(s) 719, 973
NdeI CATATG 1 cut(s) 448
NdeII GATC 3 cut(s) 229, 442, 814
NlaIV GGNNCC 1 cut(s) 679
NmeAIII GCCGAG 1 cut(s) 157
NspI RCATGY 1 cut(s) 1036
PagI TCATGA 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 999
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 2 cut(s) 425, 874
PkrI GCNGC 4 cut(s) 712, 1011, 1040, 1072
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PpuMI RGGWCCY 2 cut(s) 563, 677
Psp5II RGGWCCY 2 cut(s) 563, 677
PspN4I GGNNCC 1 cut(s) 679
PspPI GGNCC 4 cut(s) 563, 677, 692, 893
PspPPI RGGWCCY 2 cut(s) 563, 677
PsrI GAACNNNNNNTAC 2 cut(s) 933, 965
PstI CTGCAG 3 cut(s) 783, 988, 1043
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 3 cut(s) 755, 942, 1017
RsaNI GTAC 3 cut(s) 754, 941, 1016
RseI CAYNNNNRTG 2 cut(s) 195, 438
SapI GCTCTTC 1 cut(s) 999
SaqAI TTAA 4 cut(s) 24, 237, 291, 582
SatI GCNGC 4 cut(s) 711, 1010, 1039, 1071
Sau3AI GATC 3 cut(s) 229, 442, 814
Sau96I GGNCC 4 cut(s) 563, 677, 692, 893
SbfI CCTGCAGG 1 cut(s) 783
ScaI AGTACT 1 cut(s) 755
SchI GAGTC 1 cut(s) 56
SdaI CCTGCAGG 1 cut(s) 783
SduI GDGCHC 1 cut(s) 655
SfaNI GCATC 4 cut(s) 502, 784, 818, 871
SfcI CTRYAG 3 cut(s) 779, 984, 1039
SinI GGWCC 3 cut(s) 563, 677, 893
SmiMI CAYNNNNRTG 2 cut(s) 195, 438
SmlI CTYRAG 1 cut(s) 1024
SmoI CTYRAG 1 cut(s) 1024
Sse8387I CCTGCAGG 1 cut(s) 783
Sse9I AATT 8 cut(s) 169, 233, 385, 460, 477, 727, 828, 944
SsiI CCGC 3 cut(s) 305, 713, 896
SspMI CTAG 1 cut(s) 705
TaaI ACNGT 6 cut(s) 36, 252, 525, 578, 1020, 1063
TaqI TCGA 4 cut(s) 264, 879, 905, 1002
TasI AATT 8 cut(s) 169, 233, 385, 460, 477, 727, 828, 944
TatI WGTACW 3 cut(s) 753, 940, 1015
TfiI GAWTC 2 cut(s) 425, 874
Tru1I TTAA 4 cut(s) 24, 237, 291, 582
Tru9I TTAA 4 cut(s) 24, 237, 291, 582
TscAI CASTG 7 cut(s) 132, 283, 332, 581, 655, 702, 1066
TseI GCWGC 4 cut(s) 710, 1009, 1038, 1070
TspDTI ATGAA 3 cut(s) 213, 286, 417
TspGWI ACGGA 1 cut(s) 1055
TspRI CASTG 7 cut(s) 132, 283, 332, 581, 655, 702, 1066
VpaK11BI GGWCC 3 cut(s) 563, 677, 893
XapI RAATTY 3 cut(s) 169, 385, 460
XceI RCATGY 1 cut(s) 1036
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 1 cut(s) 705
ZrmI AGTACT 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.