pycom01g06940

Cinnamyl alcohol dehydrogenase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0002881
Physical Location & Seq
Reverse (-)
7516306 .. 7520108
3803 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 792 bp
ATGGTGGGTTCATGCCGCTCATGCGATAACTGCACACAGGACTTTGAAAATTACTGCTCTAAAATTGTATGGACCTACAATGAACACTATGAAGACGGCTCGAGAACCTTTGGTGGATACTCCGACAAACTAGTAGTCGATGAACACTTTGCCGTCCGAATCCCAGATAACTTGTCGTTGCAAGGTACTGCTCCCATGTTCTGTGCCGGGATCACAGTGTACAGCCCAATGAAATATTTTGGACTCATGGAACCTGGTAAACACTTGGGGGTTGTAGGGCTTGGTGGCCTTGGTCATATGGCCGTGAAGTTTGCAAAAGCTGTAGGAGCAAAGGTGACTGTAATAAGTACTTCTCCGAATAAGAAAAAGGAAGCCATGGAACACCTTGGTGTGGATGAATTTCTGATTAGTCATGACCAGGAGCAATTGCTGGCTGACATGGGTTCAATGGACGGTATCATCGATACAGTTTCAGCCCCTCACTCTCTCTCGTCATTGATTGAGTTGTTGAAGACCAATGGAAAACTAATTCTGGTGGGTCTTATCGTACAACCTCCTGAACTTCCAATTTTCCCCTTAATCTTGGGGAGGAAGCTTATTGCTGGTAGTACAATTGGGGGGATAAAAGAGACACAAGAGATGATAGATTTTGCCGCAAAGCATAATATCACAGCGGACGTGGAAGTTATTCCGATGGATTACGTCAACACCGCCCTTGAAAGAGTTTCCAAGGCTGACGTTAAGTACCGCTTTGTCATTGATGTGGCAAACACTTTGAATTCTCCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

264

Amino Acids

28.69

Weight (kDa)

5.47

Isoelectric Point (pI)

26.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 96 - 219 2.3e-24 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 18
AciI CCGC 5 cut(s) 16, 654, 674, 711, 748
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 2 cut(s) 398, 778
AfaI GTAC 6 cut(s) 187, 221, 349, 549, 610, 746
AfiI CCNNNNNNNGG 1 cut(s) 391
AgsI TTSAA 5 cut(s) 47, 447, 511, 719, 778
AhlI ACTAGT 1 cut(s) 130
AjiI CACGTC 1 cut(s) 679
AjnI CCWGG 2 cut(s) 253, 417
AleI CACNNNNGTG 1 cut(s) 387
AluBI AGCT 2 cut(s) 320, 595
AluI AGCT 2 cut(s) 320, 595
Alw26I GTCTC 1 cut(s) 623
AlwI GGATC 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 100
AoxI GGCC 2 cut(s) 286, 300
ApoI RAATTY 2 cut(s) 398, 778
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
Asp700I GAANNNNTTC 1 cut(s) 687
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 346
AvaI CYCGRG 1 cut(s) 100
AvaII GGWCC 1 cut(s) 72
BbsI GAAGAC 2 cut(s) 99, 518
BccI CCATC 1 cut(s) 688
BceAI ACGGC 3 cut(s) 112, 137, 287
BciT130I CCWGG 2 cut(s) 255, 419
BciVI GTATCC 1 cut(s) 110
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 623
BcuI ACTAGT 1 cut(s) 130
BfaI CTAG 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 321
BfuI GTATCC 1 cut(s) 110
BisI GCNGC 2 cut(s) 16, 654
BlsI GCNGC 2 cut(s) 17, 655
BmcAI AGTACT 1 cut(s) 349
Bme1390I CCNGG 3 cut(s) 208, 255, 419
Bme18I GGWCC 1 cut(s) 72
BmeT110I CYCGRG 1 cut(s) 100
BmgBI CACGTC 1 cut(s) 679
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 3 cut(s) 208, 255, 419
BpiI GAAGAC 2 cut(s) 99, 518
BpuMI CCSGG 1 cut(s) 208
Bsa29I ATCGAT 1 cut(s) 462
BsaJI CCNNGG 4 cut(s) 289, 375, 385, 729
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 1 cut(s) 391
BseBI CCWGG 2 cut(s) 255, 419
BseCI ATCGAT 1 cut(s) 462
BseDI CCNNGG 4 cut(s) 289, 375, 385, 729
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 1 cut(s) 391
BsgI GTGCAG 1 cut(s) 16
BshFI GGCC 2 cut(s) 288, 302
BshVI ATCGAT 1 cut(s) 462
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 391
BsmAI GTCTC 1 cut(s) 623
BsnI GGCC 2 cut(s) 288, 302
BsoBI CYCGRG 1 cut(s) 100
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 1 cut(s) 210
Bsp19I CCATGG 1 cut(s) 375
BspACI CCGC 5 cut(s) 16, 654, 674, 711, 748
BspANI GGCC 2 cut(s) 288, 302
BspDI ATCGAT 1 cut(s) 462
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 1 cut(s) 252
BspPI GGATC 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 18
BsrGI TGTACA 1 cut(s) 219
BssECI CCNNGG 4 cut(s) 289, 375, 385, 729
BssMI GATC 1 cut(s) 210
BssT1I CCWWGG 4 cut(s) 289, 375, 385, 729
Bst2UI CCWGG 2 cut(s) 255, 419
Bst4CI ACNGT 4 cut(s) 217, 340, 455, 469
BstAUI TGTACA 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 432
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 623
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 3 cut(s) 21, 30, 326
BstNI CCWGG 2 cut(s) 255, 419
BstSCI CCNGG 3 cut(s) 206, 253, 417
BstSFI CTRYAG 1 cut(s) 321
BstV2I GAAGAC 2 cut(s) 99, 518
Bsu15I ATCGAT 1 cut(s) 462
BsuI GTATCC 1 cut(s) 110
BsuRI GGCC 2 cut(s) 288, 302
BsuTUI ATCGAT 1 cut(s) 462
BtgI CCRYGG 1 cut(s) 375
BtrI CACGTC 1 cut(s) 679
BtsCI GGATG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 432
CciI TCATGA 1 cut(s) 412
Cfr13I GGNCC 1 cut(s) 72
ClaI ATCGAT 1 cut(s) 462
CsiI ACCWGGT 1 cut(s) 253
Csp6I GTAC 6 cut(s) 186, 220, 348, 548, 609, 745
CviAII CATG 7 cut(s) 12, 21, 196, 247, 376, 413, 439
CviQI GTAC 6 cut(s) 186, 220, 348, 548, 609, 745
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 300
Eco130I CCWWGG 4 cut(s) 289, 375, 385, 729
Eco47I GGWCC 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 778
EcoRII CCWGG 2 cut(s) 253, 417
EcoT14I CCWWGG 4 cut(s) 289, 375, 385, 729
ErhI CCWWGG 4 cut(s) 289, 375, 385, 729
FaeI CATG 7 cut(s) 15, 24, 199, 250, 379, 416, 442
FalI AAGNNNNNCTT 2 cut(s) 734, 766
FatI CATG 7 cut(s) 11, 20, 195, 246, 375, 412, 438
FauNDI CATATG 1 cut(s) 297
Fnu4HI GCNGC 2 cut(s) 16, 654
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 2 cut(s) 16, 654
FspBI CTAG 1 cut(s) 131
GluI GCNGC 2 cut(s) 16, 654
HaeIII GGCC 2 cut(s) 288, 302
HapII CCGG 1 cut(s) 207
Hin1II CATG 7 cut(s) 15, 24, 199, 250, 379, 416, 442
HincII GTYRAC 1 cut(s) 706
HindII GTYRAC 1 cut(s) 706
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 2 cut(s) 159, 243
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 3 cut(s) 220, 260, 706
Hpy188I TCNGA 5 cut(s) 124, 158, 357, 405, 693
Hpy188III TCNNGA 3 cut(s) 102, 413, 557
Hpy8I GTNNAC 3 cut(s) 220, 260, 706
HpyCH4III ACNGT 4 cut(s) 217, 340, 455, 469
HpyCH4IV ACGT 3 cut(s) 678, 702, 738
HpyCH4V TGCA 3 cut(s) 33, 181, 314
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 30, 326
HpySE526I ACGT 3 cut(s) 678, 702, 738
Hsp92II CATG 7 cut(s) 15, 24, 199, 250, 379, 416, 442
Kzo9I GATC 1 cut(s) 210
LmnI GCTCC 3 cut(s) 196, 326, 421
MabI ACCWGGT 1 cut(s) 253
MaeI CTAG 1 cut(s) 131
MaeII ACGT 3 cut(s) 678, 702, 738
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 212
MbiI CCGCTC 1 cut(s) 18
MboI GATC 1 cut(s) 210
MboII GAAGA 2 cut(s) 104, 523
MfeI CAATTG 2 cut(s) 425, 612
MluCI AATT 8 cut(s) 49, 63, 398, 425, 528, 567, 612, 778
MlyI GAGTC 1 cut(s) 237
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 3 cut(s) 489, 564, 582
MroXI GAANNNNTTC 1 cut(s) 687
MseI TTAA 2 cut(s) 578, 741
MslI CAYNNNNRTG 2 cut(s) 387, 761
MspA1I CMGCKG 1 cut(s) 674
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 3 cut(s) 208, 255, 419
MunI CAATTG 2 cut(s) 425, 612
MvaI CCWGG 2 cut(s) 255, 419
MwoI GCNNNNNNNGC 3 cut(s) 21, 30, 326
NciI CCSGG 1 cut(s) 208
NcoI CCATGG 1 cut(s) 375
NdeI CATATG 1 cut(s) 297
NdeII GATC 1 cut(s) 210
NlaIII CATG 7 cut(s) 15, 24, 199, 250, 379, 416, 442
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 334
OliI CACNNNNGTG 1 cut(s) 387
PaeR7I CTCGAG 1 cut(s) 100
PagI TCATGA 1 cut(s) 412
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PdmI GAANNNNTTC 1 cut(s) 687
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 2 cut(s) 17, 655
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 253, 417
PspGI CCWGG 2 cut(s) 253, 417
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 72
RsaI GTAC 6 cut(s) 187, 221, 349, 549, 610, 746
RsaNI GTAC 6 cut(s) 186, 220, 348, 548, 609, 745
RseI CAYNNNNRTG 2 cut(s) 387, 761
SaqAI TTAA 2 cut(s) 578, 741
SatI GCNGC 2 cut(s) 16, 654
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 72
ScaI AGTACT 1 cut(s) 349
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 3 cut(s) 208, 255, 419
SexAI ACCWGGT 1 cut(s) 253
SfcI CTRYAG 1 cut(s) 321
Sfr274I CTCGAG 1 cut(s) 100
SinI GGWCC 1 cut(s) 72
SlaI CTCGAG 1 cut(s) 100
SmiMI CAYNNNNRTG 2 cut(s) 387, 761
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
SpeI ACTAGT 1 cut(s) 130
Sse9I AATT 8 cut(s) 49, 63, 398, 425, 528, 567, 612, 778
SsiI CCGC 5 cut(s) 16, 654, 674, 711, 748
SspI AATATT 1 cut(s) 236
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 3 cut(s) 206, 253, 417
StyI CCWWGG 4 cut(s) 289, 375, 385, 729
TaaI ACNGT 4 cut(s) 217, 340, 455, 469
TaiI ACGT 3 cut(s) 681, 705, 741
TaqI TCGA 3 cut(s) 101, 138, 462
TasI AATT 8 cut(s) 49, 63, 398, 425, 528, 567, 612, 778
TatI WGTACW 3 cut(s) 219, 347, 608
TauI GCSGC 2 cut(s) 18, 656
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 2 cut(s) 578, 741
Tru9I TTAA 2 cut(s) 578, 741
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 5 cut(s) 96, 105, 156, 245, 411
TspRI CASTG 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 2 cut(s) 398, 778
XhoI CTCGAG 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 687
XspI CTAG 1 cut(s) 131
ZrmI AGTACT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.