pycom07g12640

rRNA-processing protein FCF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0002196
Physical Location & Seq
Reverse (-)
13930788 .. 13933381
2594 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
ATGTGCCAAATGTTTCTTCCGCGCTGTTCTTTAAATACAACACTGCTTTGGGACCGCCTTACCGGGTTTTGGTTGATACCAACTTCAACAATTTCTCTATCCAGAATAAGGTTGGATTTGGAGAAGGGAATGATGGATCGCCTATACGCAAAATGCACTCCTTGTATCACGGATTGTGTAATGGCAGAGCTCGAGAAGTTAGGTCAGAAATATCATGTGGCTCTGAGGATTGCTAAGGATCCCCGTTTTGAGAGACTACTCTGCACTCATAAAGGGACTTACGCTGATGACTGTATTGTTGAAAGAGTTACCCAGCACAAATGCTACATTGTTGCTACATGCGATCGTGATTTAAAGCGAAGAATCAGAAAGGTCCCTGGTGTGCCAATCATGTACATCACTCAACACAAGTATTCAATTGAGAGGTTGCCAGAAGCAACCATAGGTGGAGGTAGGCTTAGATACCAAAAAACTCACATAAGTACTGTTAATTGCCAAATGCTGTTTTATTTCAAGGTTTTTAACCATCTCCAAGATTTTAATGATTGGTACAAAGCAAAGACTGGTACTCAGATTCATATTACATGCTCAGAACAGCAGCAACATCGTCAATGGATTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Fcf1

Protein Analysis

208

Amino Acids

24.5

Weight (kDa)

9.29

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf1 PF04900 48 - 142 8.4e-36 Fcf1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 22
AciI CCGC 2 cut(s) 20, 55
AclWI GGATC 3 cut(s) 144, 233, 246
AfaI GTAC 4 cut(s) 395, 484, 551, 568
AfiI CCNNNNNNNGG 2 cut(s) 69, 108
AgsI TTSAA 4 cut(s) 87, 302, 417, 514
AjnI CCWGG 1 cut(s) 376
AjuI GAANNNNNNNTTGG 1 cut(s) 32
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 247
AlwI GGATC 3 cut(s) 144, 233, 246
Ama87I CYCGRG 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 598
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 2 cut(s) 52, 373
AsuC2I CCSGG 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 2 cut(s) 52, 373
BamHI GGATCC 1 cut(s) 238
BanII GRGCYC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 610
BccI CCATC 2 cut(s) 127, 534
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 1 cut(s) 378
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 247
BisI GCNGC 1 cut(s) 599
BlsI GCNGC 1 cut(s) 600
BmcAI AGTACT 1 cut(s) 484
Bme1390I CCNGG 2 cut(s) 64, 378
Bme18I GGWCC 2 cut(s) 52, 373
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 52, 373
BmiI GGNNCC 3 cut(s) 53, 240, 375
BmrFI CCNGG 2 cut(s) 64, 378
Bpu10I CCTNAGC 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 376
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 108
Bse1I ACTGG 1 cut(s) 568
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 1 cut(s) 376
BseLI CCNNNNNNNGG 2 cut(s) 69, 108
BseMII CTCAG 3 cut(s) 215, 584, 603
BseNI ACTGG 1 cut(s) 568
BseXI GCAGC 1 cut(s) 610
BseYI CCCAGC 1 cut(s) 312
BsgI GTGCAG 1 cut(s) 247
Bsh1236I CGCG 1 cut(s) 22
Bsh1285I CGRYCG 1 cut(s) 346
BsiEI CGRYCG 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 63
BslFI GGGAC 3 cut(s) 65, 289, 359
BslI CCNNNNNNNGG 2 cut(s) 69, 108
BsmAI GTCTC 1 cut(s) 247
BsmFI GGGAC 3 cut(s) 65, 289, 359
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 192
Bsp1407I TGTACA 1 cut(s) 393
Bsp143I GATC 3 cut(s) 136, 238, 343
BspACI CCGC 2 cut(s) 20, 55
BspCNI CTCAG 3 cut(s) 216, 583, 602
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 3 cut(s) 53, 240, 375
BspPI GGATC 3 cut(s) 144, 233, 246
BsrGI TGTACA 1 cut(s) 393
BsrI ACTGG 1 cut(s) 568
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 3 cut(s) 136, 238, 343
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 2 cut(s) 293, 487
BstAUI TGTACA 1 cut(s) 393
BstDEI CTNAG 5 cut(s) 224, 234, 458, 570, 589
BstFNI CGCG 1 cut(s) 22
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 3 cut(s) 139, 241, 346
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 3 cut(s) 136, 238, 343
BstMCI CGRYCG 1 cut(s) 346
BstNI CCWGG 1 cut(s) 378
BstNSI RCATGY 2 cut(s) 342, 588
BstSCI CCNGG 2 cut(s) 62, 376
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 610
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 41
CfoI GCGC 1 cut(s) 24
Cfr13I GGNCC 2 cut(s) 52, 373
Csp6I GTAC 4 cut(s) 394, 483, 550, 567
CviAII CATG 4 cut(s) 215, 339, 391, 585
CviJI RGCY 3 cut(s) 190, 221, 457
CviKI_1 RGCY 3 cut(s) 190, 221, 457
CviQI GTAC 4 cut(s) 394, 483, 550, 567
DdeI CTNAG 5 cut(s) 224, 234, 458, 570, 589
DpnI GATC 3 cut(s) 138, 240, 345
DpnII GATC 3 cut(s) 136, 238, 343
DraI TTTAAA 2 cut(s) 33, 354
Ecl136II GAGCTC 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 2 cut(s) 52, 373
Eco53kI GAGCTC 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 192
FaeI CATG 4 cut(s) 218, 342, 394, 588
FaiI YATR 9 cut(s) 145, 216, 270, 340, 392, 443, 479, 579, 586
FaqI GGGAC 3 cut(s) 65, 289, 359
FatI CATG 4 cut(s) 214, 338, 390, 584
Fnu4HI GCNGC 1 cut(s) 599
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 599
GlaI GCGC 1 cut(s) 23
GluI GCNGC 1 cut(s) 599
GsaI CCCAGC 1 cut(s) 316
HapII CCGG 1 cut(s) 63
HhaI GCGC 1 cut(s) 24
Hin1II CATG 4 cut(s) 218, 342, 394, 588
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HinfI GANTC 2 cut(s) 363, 574
HpaII CCGG 1 cut(s) 63
Hpy188I TCNGA 5 cut(s) 207, 225, 368, 573, 592
Hpy188III TCNNGA 3 cut(s) 102, 193, 347
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 293, 487
HpyCH4V TGCA 2 cut(s) 156, 264
HpyF3I CTNAG 5 cut(s) 224, 234, 458, 570, 589
Hsp92II CATG 4 cut(s) 218, 342, 394, 588
HspAI GCGC 1 cut(s) 22
Kzo9I GATC 3 cut(s) 136, 238, 343
LpnPI CCDG 7 cut(s) 76, 115, 326, 363, 390, 444, 549
Lsp1109I GCAGC 1 cut(s) 610
MaeIII GTNAC 1 cut(s) 307
MalI GATC 3 cut(s) 138, 240, 345
MboI GATC 3 cut(s) 136, 238, 343
MboII GAAGA 2 cut(s) 8, 372
MfeI CAATTG 1 cut(s) 417
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 3 cut(s) 90, 417, 490
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 3 cut(s) 219, 417, 443
MseI TTAA 5 cut(s) 32, 353, 489, 522, 540
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 2 cut(s) 64, 378
MunI CAATTG 1 cut(s) 417
MvaI CCWGG 1 cut(s) 378
MvnI CGCG 1 cut(s) 22
NciI CCSGG 1 cut(s) 64
NdeII GATC 3 cut(s) 136, 238, 343
NlaIII CATG 4 cut(s) 218, 342, 394, 588
NlaIV GGNNCC 3 cut(s) 53, 240, 375
NspI RCATGY 2 cut(s) 342, 588
PaeR7I CTCGAG 1 cut(s) 191
PfeI GAWTC 2 cut(s) 363, 574
PkrI GCNGC 1 cut(s) 600
Ple19I CGATCG 1 cut(s) 346
PpuMI RGGWCCY 1 cut(s) 373
Psp124BI GAGCTC 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 376
PspFI CCCAGC 1 cut(s) 312
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 3 cut(s) 53, 240, 375
PspPI GGNCC 2 cut(s) 52, 373
PspPPI RGGWCCY 1 cut(s) 373
PsuI RGATCY 1 cut(s) 238
PvuI CGATCG 1 cut(s) 346
RsaI GTAC 4 cut(s) 395, 484, 551, 568
RsaNI GTAC 4 cut(s) 394, 483, 550, 567
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 5 cut(s) 32, 353, 489, 522, 540
SatI GCNGC 1 cut(s) 599
Sau3AI GATC 3 cut(s) 136, 238, 343
Sau96I GGNCC 2 cut(s) 52, 373
ScaI AGTACT 1 cut(s) 484
ScrFI CCNGG 2 cut(s) 64, 378
SduI GDGCHC 1 cut(s) 192
SetI ASST 8 cut(s) 113, 192, 205, 375, 428, 448, 454, 519
Sfr274I CTCGAG 1 cut(s) 191
SinI GGWCC 2 cut(s) 52, 373
SlaI CTCGAG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 3 cut(s) 90, 417, 490
SsiI CCGC 2 cut(s) 20, 55
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 62, 376
TaaI ACNGT 2 cut(s) 293, 487
TaqI TCGA 1 cut(s) 192
TasI AATT 3 cut(s) 90, 417, 490
TatI WGTACW 2 cut(s) 393, 482
TfiI GAWTC 2 cut(s) 363, 574
Tru1I TTAA 5 cut(s) 32, 353, 489, 522, 540
Tru9I TTAA 5 cut(s) 32, 353, 489, 522, 540
TscAI CASTG 1 cut(s) 48
TseI GCWGC 1 cut(s) 598
TspDTI ATGAA 1 cut(s) 566
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 1 cut(s) 48
VpaK11BI GGWCC 2 cut(s) 52, 373
XceI RCATGY 2 cut(s) 342, 588
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 191
ZrmI AGTACT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.