Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003404

Physical Location & Seq

Genomic Coordinates Forward (+)

20228991 .. 20229935

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAAGCTAAGCTTCAGTCCAAGACTCTCACCGTTTCTTAAACCCTCTCTTTTCACAAACCTCCACCGCTCCGTTTGCTCTGCTTCTTCAATACCACCACCACCCACCACCCCAAAACCCCAAACCCCTCTGTTTCTGCGACCGCCCACCCACTCTGCCACCACCTCCGACCTCCAAAAATGGCACGACTGGGCCAACACCCTCGCTTCCTCTGTTGGGTCAACGTTCGTGGACTTGGACAACGGTCCGGACTCGACCCTGTTGCGCAGAGAGCTCAAATGGCTCATGGAGGACGCAATCGAAGAAACCAAAAACGTCGATAACAACGACGGAAGCGTTAGGCTAAGGGTCGAAATTGAGGAGCTTTATATGTTGTGGAAGCAGAGGGTTGAGGAGAGGAGACCTTTTCAGTATGTTGTCGGGTGCGAGCATTGGAGGGACTTGGTGTTGTGTGTTGAAGAAGGGGTTTTGATTCCGAGGCCAGAGACTGAGCTCATTGTTGATTTGGTGGGGGATGTGGTTTTGGGGAATGAGGGGTTGAGGGAGGGGTTGTGGGCTGATTTGGGGACGGGGAGTGGTGCGATTGCGATTGGGATTGCAAGGGTTTTGGGGAGTGGTGGGAGAGTCATTGCTACCGATTTGAGTCCCACGGCAGTTGGGGTTGCAGCTTTTAATGTGCAGAGGTATGGTTTGCAGGTTAGTAGTGGAGCTAAGGCAAGGATCTTGGTTTGGACCGTTAAAGGATGTGGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS Methyltransf_31 PrmA

Protein Analysis

252

Amino Acids

27.58

Weight (kDa)

6.12

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64150
fragaria_vesca	FvH4_3g16091
malus_domestica	MD05G1214000.v1.1 MD05G1214300.v1.1 MD10G1197800.v1.1
prunus_persica	Prupe.4G144100_v2.0.a1
pyrus_communis	pycom10g17050
rosa_chinensis	RchiOBHm_Chr5g0027061 RchiOBHm_Chr6g0281451
rosa_laevigata	RLG00000009431 RLG00000032986
rosa_multiflora	Rmu_co7998874.1_g000001 Rmu_sc0000847.1_g000007 Rmu_sc0000882.1_g000023 Rmu_sc0001866.1_g000008 Rmu_sc0006065.1_g000029
rosa_roxburghii	Rroxscaffold_1G00052430 Rroxscaffold_2G00135560 Rroxscaffold_6G00430700
rosa_rugosa	Rorug02G0601800 Rorug05G0096900 Rorug05G0097000
rosa_samantha	Rh1CG018500 Rh1DG015600 Rh3AG054200 Rh3BG055600 Rh3CG054900 Rh4BG038500 Rh5AG190600 Rh5BG188200 Rh5CG208000 Rh5DG190000 Rh5DG541600 Rh6BG255900 Rh6DG247400
rosa_wichuraiana	Rw5G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	685
AccBSI	CCGCTC	1 cut(s)	69
AccIII	TCCGGA	1 cut(s)	247
AciI	CCGC	2 cut(s)	67, 143
AclI	AACGTT	1 cut(s)	224
AclWI	GGATC	1 cut(s)	728
AfiI	CCNNNNNNNGG	1 cut(s)	216
AgsI	TTSAA	2 cut(s)	90, 458
AluBI	AGCT	7 cut(s)	7, 12, 274, 364, 493, 668, 710
AluI	AGCT	7 cut(s)	7, 12, 274, 364, 493, 668, 710
Alw21I	GWGCWC	2 cut(s)	276, 495
Alw26I	GTCTC	2 cut(s)	394, 479
AlwI	GGATC	1 cut(s)	728
AlwNI	CAGNNNCTG	1 cut(s)	488
Aor13HI	TCCGGA	1 cut(s)	247
AoxI	GGCC	2 cut(s)	192, 479
ApeKI	GCWGC	1 cut(s)	665
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	3 cut(s)	192, 245, 732
AsuHPI	GGTGA	1 cut(s)	21
AvaII	GGWCC	2 cut(s)	245, 732
BanII	GRGCYC	2 cut(s)	276, 495
Bbv12I	GWGCWC	2 cut(s)	276, 495
BbvI	GCAGC	1 cut(s)	677
BceAI	ACGGC	1 cut(s)	666
BcgI	CGANNNNNNTGC	2 cut(s)	244, 278
BcoDI	GTCTC	2 cut(s)	394, 479
BfuAI	ACCTGC	1 cut(s)	685
BisI	GCNGC	1 cut(s)	666
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	667
Bme18I	GGWCC	2 cut(s)	245, 732
BmgT120I	GGNCC	3 cut(s)	192, 245, 732
BmrI	ACTGGG	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	199
BoxI	GACNNNNGTC	1 cut(s)	243
Bpu10I	CCTNAGC	2 cut(s)	344, 711
Bpu1102I	GCTNAGC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	394
BsaJI	CCNNGG	2 cut(s)	476, 648
BsaWI	WCCGGW	1 cut(s)	247
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	627
BseAI	TCCGGA	1 cut(s)	247
BseDI	CCNNGG	2 cut(s)	476, 648
BseGI	GGATG	2 cut(s)	520, 749
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	3 cut(s)	374, 407, 412
BseXI	GCAGC	1 cut(s)	677
BsgI	GTGCAG	1 cut(s)	698
Bsh1285I	CGRYCG	1 cut(s)	143
BshFI	GGCC	2 cut(s)	194, 481
BsiEI	CGRYCG	1 cut(s)	143
BsiHKAI	GWGCWC	2 cut(s)	276, 495
BsiSI	CCGG	1 cut(s)	248
BslFI	GGGAC	3 cut(s)	452, 580, 630
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	2 cut(s)	394, 479
BsmFI	GGGAC	3 cut(s)	452, 580, 630
BsnI	GGCC	2 cut(s)	194, 481
Bso31I	GGTCTC	1 cut(s)	394
Bsp1286I	GDGCHC	2 cut(s)	276, 495
Bsp13I	TCCGGA	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	720
Bsp1720I	GCTNAGC	1 cut(s)	8
BspACI	CCGC	2 cut(s)	67, 143
BspANI	GGCC	2 cut(s)	194, 481
BspCNI	CTCAG	1 cut(s)	481
BspEI	TCCGGA	1 cut(s)	247
BspMI	ACCTGC	1 cut(s)	685
BspPI	GGATC	1 cut(s)	728
BspTNI	GGTCTC	1 cut(s)	394
BsrBI	CCGCTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	627
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	476, 648
BssMI	GATC	1 cut(s)	720
Bst4CI	ACNGT	3 cut(s)	33, 245, 736
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	4 cut(s)	8, 344, 489, 711
BstDSI	CCRYGG	1 cut(s)	648
BstF5I	GGATG	2 cut(s)	520, 749
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	1 cut(s)	723
BstMAI	GTCTC	2 cut(s)	394, 479
BstMBI	GATC	1 cut(s)	720
BstMCI	CGRYCG	1 cut(s)	143
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 271, 280
BstPAI	GACNNNNGTC	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	677
BstX2I	RGATCY	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	720
BsuRI	GGCC	2 cut(s)	194, 481
BtgI	CCRYGG	1 cut(s)	648
BtsCI	GGATG	2 cut(s)	520, 749
BveI	ACCTGC	1 cut(s)	685
Cac8I	GCNNGC	1 cut(s)	428
CaiI	CAGNNNCTG	1 cut(s)	488
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	3 cut(s)	192, 245, 732
CpoI	CGGWCCG	1 cut(s)	245
CseI	GACGC	1 cut(s)	302
CspCI	CAANNNNNGTGG	4 cut(s)	210, 245, 637, 672
CspI	CGGWCCG	1 cut(s)	245
CviAII	CATG	1 cut(s)	286
DdeI	CTNAG	4 cut(s)	8, 344, 489, 711
DpnI	GATC	1 cut(s)	722
DpnII	GATC	1 cut(s)	720
Ecl136II	GAGCTC	2 cut(s)	274, 493
Eco24I	GRGCYC	2 cut(s)	276, 495
Eco31I	GGTCTC	1 cut(s)	394
Eco47I	GGWCC	2 cut(s)	245, 732
Eco53kI	GAGCTC	2 cut(s)	274, 493
EcoICRI	GAGCTC	2 cut(s)	274, 493
EcoT38I	GRGCYC	2 cut(s)	276, 495
FaeI	CATG	1 cut(s)	289
FaiI	YATR	5 cut(s)	287, 369, 371, 414, 687
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	3 cut(s)	452, 580, 630
FatI	CATG	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	666
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	2 cut(s)	276, 495
Fsp4HI	GCNGC	1 cut(s)	666
FspI	TGCGCA	1 cut(s)	266
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	1 cut(s)	666
HaeIII	GGCC	2 cut(s)	194, 481
HapII	CCGG	1 cut(s)	248
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	1 cut(s)	289
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	10
HinfI	GANTC	5 cut(s)	24, 251, 472, 624, 643
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	2 cut(s)	222, 232
Hpy188I	TCNGA	2 cut(s)	169, 477
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	2 cut(s)	222, 232
Hpy99I	CGWCG	2 cut(s)	320, 332
HpyAV	CCTTC	2 cut(s)	455, 744
HpyCH4III	ACNGT	3 cut(s)	33, 245, 736
HpyCH4IV	ACGT	2 cut(s)	224, 315
HpyCH4V	TGCA	4 cut(s)	599, 665, 679, 694
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 271, 280
HpyF3I	CTNAG	4 cut(s)	8, 344, 489, 711
HpySE526I	ACGT	2 cut(s)	224, 315
Hsp92II	CATG	1 cut(s)	289
HspAI	GCGC	1 cut(s)	265
Kpn2I	TCCGGA	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	720
LmnI	GCTCC	3 cut(s)	74, 361, 707
LpnPI	CCDG	5 cut(s)	175, 261, 272, 495, 680
Lsp1109I	GCAGC	1 cut(s)	677
MaeII	ACGT	2 cut(s)	224, 315
MalI	GATC	1 cut(s)	722
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	1 cut(s)	720
MboII	GAAGA	3 cut(s)	78, 314, 470
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	2 cut(s)	276, 495
MluCI	AATT	1 cut(s)	354
MlyI	GAGTC	4 cut(s)	18, 245, 633, 652
MmeI	TCCRAC	1 cut(s)	192
MroI	TCCGGA	1 cut(s)	247
MseI	TTAA	3 cut(s)	39, 672, 738
MspI	CCGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	3 cut(s)	75, 271, 280
NdeII	GATC	1 cut(s)	720
NlaIII	CATG	1 cut(s)	289
NsbI	TGCGCA	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	2 cut(s)	324, 333
PfeI	GAWTC	1 cut(s)	472
PkrI	GCNGC	1 cut(s)	667
PleI	GAGTC	4 cut(s)	18, 245, 632, 651
PpsI	GAGTC	4 cut(s)	18, 245, 632, 651
PshAI	GACNNNNGTC	1 cut(s)	243
Psp124BI	GAGCTC	2 cut(s)	276, 495
Psp1406I	AACGTT	1 cut(s)	224
PspPI	GGNCC	3 cut(s)	192, 245, 732
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	720
Rsr2I	CGGWCCG	1 cut(s)	245
RsrII	CGGWCCG	1 cut(s)	245
SacI	GAGCTC	2 cut(s)	276, 495
SaqAI	TTAA	3 cut(s)	39, 672, 738
SatI	GCNGC	1 cut(s)	666
Sau3AI	GATC	1 cut(s)	720
Sau96I	GGNCC	3 cut(s)	192, 245, 732
SchI	GAGTC	4 cut(s)	18, 245, 633, 652
SduI	GDGCHC	2 cut(s)	276, 495
SinI	GGWCC	2 cut(s)	245, 732
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	2 cut(s)	67, 143
SstI	GAGCTC	2 cut(s)	276, 495
TaaI	ACNGT	3 cut(s)	33, 245, 736
TaiI	ACGT	2 cut(s)	227, 318
TaqI	TCGA	4 cut(s)	254, 300, 318, 351
TasI	AATT	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	472
Tru1I	TTAA	3 cut(s)	39, 672, 738
Tru9I	TTAA	3 cut(s)	39, 672, 738
TseI	GCWGC	1 cut(s)	665
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	61, 345
VpaK11BI	GGWCC	2 cut(s)	245, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.