pycom11g05860

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0002740
Physical Location & Seq
Reverse (-)
4495399 .. 4502179
6781 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3195 bp
ATGTATACAAAAAATGCAATCCGGTATTGTACGTTGACAAGTCAATCGATTCACAAATTTTGCGCGACAAAAAACGCATACTATAGCTCCTCCTCTTCTGTATACATTCCCATACTACAAGATCCGCACAGACTCTCTCTCTCCCCCTCCCCCTCCTCTGCAAATCCACACGCAGAAGGTTCTGCTGTGCCACATTCTTCTCCGCTTATCGGGTCCTCCTACCGAAGCCCCGACCCGGGCACCATGGCCGCCGCTAACGCCCCCATGACGATGAAAGAGGCCCTAACGTTGCCTAGTATTGGGATCAATCCCCAATTCATCACGTTTACGCATGTGACTATGGAATCGGATAAGTACATTTGTGTTAGGGAGACATCGCCGCAGAATAGCGTCGTTATCATCGATATGAGCATGCCCATGCAGCCATTGCGTCGACCCATTACCGCCGACTCGGCTTTGATGAATCCCAATTCCAGAATTCTTGCTTTAAAAGCTCAAGTTCAAGGAACAACTCAGGACCATTTACAAATATTTAACATTGAAATGAAAGCAAAGATGAAATCACATCAGATGCCTGAGCAGATTGTCTTTTGGAAGTGGATTACTCCAAAGATGCTGGGTCTGGTCACACAGACCTCAGTATATCATTGGTTAATTGAAGGTGAATCCGAGCCTACAAAGGTCTTTGAGCGGACGGCTAATTTGGCAAACAATCAAATAATCAACTACCGTTGTGATCCTTCGGAAAAGTGGTTGGTCTTAATAGGAATTGCTCCTGGTTCAGCAGAGAGGCCACAACTTGTCAAAGGAAATATGCAGCTTTTTTCTGTGGAACAGAAACGGAGTCAGGCTCTTGAAGCACATGCTGCATCGTTTGCCACATATAAAGTTCCTGGGAATGAGCATCCATCAATTCTTATTAGTTTTGCCTCAAAGTCCTCCAATGCTGGACAGGTTACATCAAAGATGCATGTAATTGAGCTTGGTGCCCAGCCAGGAAAACCATCATATACTAAGAAGCAAGCAGATTTATTCTTTCCTCCGGATTTTGCTGATGACTTTCCAGTATCAATGCAGATATCGGAAAAGTATGGGTTGATATATGTTATCACAAAGCTTGGACTTTTATTTGTATATGACCTAGAGACAGCAACTGCAGTTTATAGAAATCGAATCAGTCCAGATCCTATATTTTTGACAGCTGAAGCTTCAACTGTTGGGGGTTTTTATGCAGTCAATAGGCGAGGCCAGGTCTTACTTGCCACTGTAAATGAACAAACAATTGTACCTTTTGTTAGTGGTCAGTTGAACAATTTGGGGCTTGCAGTGAGTCTTGCGAAAAGAGGAAACCTTCCTGGTGCCGAGGACCTGGTTGTCCAGCGGTTCCAAGAACTGTTTTCTCAGACTAAGTATAAGGAGGCTGCAGAGCTTGCCGCGGAATCTCCAATGGGGATACTCCGTACTGCTGATACTGTTGCTAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACCCCACCGTTATTGCAGTATTTTGGAACTCTTTTAACTAGAGGAAAACTCAATGCTTATGAATCATTGGAACTGTCACGTTTAGTTGTAAATCAGAACAAAAAGAATCTTTTGGAGAATTGGCTAGCAGAGGACAAGCTAGAATGTAGTGAAGAGCTTGGAGATCTTGTGAAGACAGTGGATAATGACCTCGCTTTGAAAATATACATCAAAGCCCGGGCAACTCCCAAAGTTGTTGCAGCATTTGCTGAGAGAAGGGAATTTGACAAGATTTTAATATACTCAAAGCAGGTTGGATATACACCCGATTATTTGTTCCTTCTCCAAACAATTTTGCGGGCAGATCCCCAGGGGGCTGTTAATTTTGCTCTAATGATGTCTCAAATGGAGGGAGGTTGTCCCATTGACTACAATACCATCACCGATCTGTTCCTTCAGAGGAACTTGATCCGTGAGGCAACAGCCTTTTTGTTGGATGTGCTGAAGCCGAATCTACCTGAGCATGGATTCCTACAGACAAAGGTTTTGGAAATCAATCTTGTGACTTTTCCAAATGTTGCCGATGCTATATTGGCCAATGGTATGTTCAGTCATTACGATCGCCCACGTATTGGTCAACTTTGTGAAAAAGCTGGTTTGTATTTGCGTGCCCTACAGCACTACACTGAGTTGCCTGATATCAAGCGTGTCATCGTGAACACACATGCAATTGACCCTCAGGCTCTTGTCGAGTTCTTTGGAACTCTTTCTGTAGAATGGGCTCTTGAGTGCATGAAAGATCTTCTGCTGGTCAATCTTAGGGGCAATCTTCAGATTATTGTACAGACTGCCAAGGAGTATTCTGAGCAACTGGGTGTAGATAAATGCATAAAATTGTTTGAGCAGTTCAAGTCCTATGAGGGGCTGTACTTCTTCCTAGGCGCATATTTGAGCTCCAGTGAGGATCCTGATATCCATTTCAAGTACATTGAAGCAGCTGCAAAAACTGGACAGATTAAGGAGGTGGAGCGTGTGACACGGGAATCCAATTTTTATGACCCTGAAAAAGCTAAGAACTTTTTAATGGAAGCAAAGCTTCCAGACGCACGTCCTCTGATTAATGTCTGTGATCGTTTTGGCTTTGTTCCAGATCTCACCCATTATTTGTATACGAACAATATGCTTCGTTACATTGAAGGTTATGTCCAAAAGGTCAATCCAGGAAATGCTCCTTTAGTTGTAGGGCAGCTATTGGATGATGAATGCCCTGAAGATTTCATTAAAGGTCTTATTCTATCAGTTCGTTCTCTTCTACCGGTTGAGCCCCTTGACGAAGAATGCGAAAAGAGGAATCGTCTTCGCTTGCTCACCCAATTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAAGATGTACATGTCCACAATGCTCTGGGTAAAATCATCATAGATAGCGGCAACAATCCTGAGCATTTTCTCAAACTAACCCATACTATGATTCTCGTGTTGTTGGTAAATATTGTGAAAAAAGGGATCCTACCCTTGCTGTTGTTGCATACCGTAGAGGGCAATGCGATGATGAACTCGTTAACGTTACAAATAAAAATTCTTTGTTCAAACTCCAGGCCAGATATGTTGTGGAAAGAATGGATGATGATCTCTGGGCTAAGGTCCTTGATCCTGAAAATGAATATAGAAGGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100
Pfam Domains
Protein Families
Clathrin Clathrin-link Clathrin_H_link Clathrin_propel

Protein Analysis

1065

Amino Acids

119.19

Weight (kDa)

6.4

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clathrin_propel PF01394 101 - 136 1.6e-06 Clathrin propeller repeat
Clathrin-link PF09268 425 - 448 4.5e-09 Clathrin, heavy-chain linker
Clathrin_H_link PF13838 450 - 515 2.4e-27 Clathrin-H-link
Clathrin PF00637 638 - 773 2.7e-25 Region in Clathrin and VPS
Clathrin PF00637 782 - 922 4.2e-27 Region in Clathrin and VPS
Clathrin PF00637 931 - 993 1.9e-08 Region in Clathrin and VPS
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1373
Acc36I ACCTGC 1 cut(s) 1792
AccB1I GGYRCC 3 cut(s) 239, 986, 1358
AccB7I CCANNNNNTGG 2 cut(s) 2123, 2869
AccBSI CCGCTC 1 cut(s) 691
AccI GTMKAC 4 cut(s) 5, 102, 433, 2660
AccII CGCG 2 cut(s) 65, 1436
AccIII TCCGGA 1 cut(s) 1042
AclI AACGTT 2 cut(s) 287, 3080
AcoI YGGCCR 2 cut(s) 246, 2085
AcsI RAATTY 5 cut(s) 56, 477, 1481, 1772, 3093
AcuI CTGAAG 5 cut(s) 1224, 1931, 2015, 2306, 2781
AfaI GTAC 8 cut(s) 31, 356, 1287, 1462, 2334, 2420, 2477, 2904
AfiI CCNNNNNNNGG 8 cut(s) 209, 235, 236, 299, 2015, 2123, 2412, 2869
AflIII ACRYGT 1 cut(s) 2905
AgeI ACCGGT 1 cut(s) 2806
AjiI CACGTC 1 cut(s) 2600
AjnI CCWGG 9 cut(s) 775, 892, 994, 1248, 1354, 1368, 1860, 2710, 3110
AjuI GAANNNNNNNTTGG 2 cut(s) 2081, 2113
Alw21I GWGCWC 1 cut(s) 2447
Alw26I GTCTC 3 cut(s) 365, 1139, 1896
AlwNI CAGNNNCTG 1 cut(s) 1154
Ama87I CYCGRG 2 cut(s) 235, 1728
Aor13HI TCCGGA 1 cut(s) 1042
AoxI GGCC 6 cut(s) 246, 279, 791, 1246, 2085, 3113
ApeKI GCWGC 9 cut(s) 421, 817, 866, 1421, 1751, 2486, 2489, 2737, 3189
ApoI RAATTY 5 cut(s) 56, 477, 1481, 1772, 3093
ArsI GACNNNNNNTTYG 4 cut(s) 685, 717, 2020, 2052
AseI ATTAAT 1 cut(s) 2610
AsiGI ACCGGT 1 cut(s) 2806
Asp700I GAANNNNTTC 1 cut(s) 2257
AspA2I CCTAGG 1 cut(s) 2428
AspLEI GCGC 2 cut(s) 65, 2435
AspS9I GGNCC 5 cut(s) 213, 280, 517, 1366, 3159
AsuC2I CCSGG 4 cut(s) 236, 237, 1729, 1730
AsuHPI GGTGA 4 cut(s) 674, 1924, 2638, 2851
AsuNHI GCTAGC 1 cut(s) 1636
AvaI CYCGRG 2 cut(s) 235, 1728
AvaII GGWCC 4 cut(s) 213, 517, 1366, 3159
AvrII CCTAGG 1 cut(s) 2428
AxyI CCTNAGG 1 cut(s) 2229
BaeGI GKGCMC 3 cut(s) 242, 991, 2164
BaeI ACNNNNGTAYC 2 cut(s) 1269, 1302
BalI TGGCCA 1 cut(s) 2087
BamHI GGATCC 2 cut(s) 2455, 3021
BanI GGYRCC 3 cut(s) 239, 986, 1358
BanII GRGCYC 3 cut(s) 2275, 2447, 2817
BauI CACGAG 1 cut(s) 2990
BbsI GAAGAC 2 cut(s) 1691, 2840
Bbv12I GWGCWC 1 cut(s) 2447
BbvI GCAGC 8 cut(s) 433, 829, 853, 1408, 1763, 2476, 2498, 2749
BccI CCATC 3 cut(s) 916, 1012, 1937
BceAI ACGGC 1 cut(s) 711
BcgI CGANNNNNNTGC 2 cut(s) 2653, 2687
BciT130I CCWGG 9 cut(s) 777, 894, 996, 1250, 1356, 1370, 1862, 2712, 3112
BciVI GTATCC 1 cut(s) 1446
BcnI CCSGG 4 cut(s) 236, 237, 1729, 1730
BcoDI GTCTC 3 cut(s) 365, 1139, 1896
BfaI CTAG 6 cut(s) 294, 1142, 1551, 1637, 1652, 2429
BfmI CTRYAG 6 cut(s) 82, 1155, 1422, 2024, 2165, 2262
BfuAI ACCTGC 1 cut(s) 1792
BfuI GTATCC 1 cut(s) 1446
BglI GCCNNNNNGGC 1 cut(s) 452
BglII AGATCT 3 cut(s) 1675, 2290, 2641
BlnI CCTAGG 1 cut(s) 2428
Bme18I GGWCC 4 cut(s) 213, 517, 1366, 3159
BmeT110I CYCGRG 2 cut(s) 235, 1728
BmgBI CACGTC 1 cut(s) 2600
BmgT120I GGNCC 5 cut(s) 213, 280, 517, 1366, 3159
BmiI GGNNCC 7 cut(s) 214, 241, 988, 1360, 1385, 2457, 3023
BmrI ACTGGG 1 cut(s) 2372
BmsI GCATC 7 cut(s) 561, 603, 878, 913, 957, 2065, 2884
BmtI GCTAGC 1 cut(s) 1640
BmuI ACTGGG 1 cut(s) 2372
BoxI GACNNNNGTC 1 cut(s) 2598
BpiI GAAGAC 2 cut(s) 1691, 2840
BplI GAGNNNNNCTC 4 cut(s) 835, 867, 1545, 1577
BpmI CTGGAG 2 cut(s) 2431, 3094
Bpu10I CCTNAGC 4 cut(s) 576, 2010, 2955, 3155
BpuEI CTTGAG 2 cut(s) 480, 2297
BpuMI CCSGG 4 cut(s) 236, 237, 1729, 1730
Bsa29I ATCGAT 2 cut(s) 47, 402
BsaAI YACGTR 1 cut(s) 2120
BsaBI GATNNNNATC 1 cut(s) 3143
BsaWI WCCGGW 3 cut(s) 21, 1042, 2806
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 1665, 1695
Bsc4I CCNNNNNNNGG 8 cut(s) 209, 235, 236, 299, 2015, 2123, 2412, 2869
Bse118I RCCGGY 1 cut(s) 2806
Bse1I ACTGG 4 cut(s) 1064, 2367, 2448, 2503
Bse21I CCTNAGG 1 cut(s) 2229
Bse3DI GCAATG 2 cut(s) 425, 3064
Bse8I GATNNNNATC 1 cut(s) 3143
BseAI TCCGGA 1 cut(s) 1042
BseBI CCWGG 9 cut(s) 777, 894, 996, 1250, 1356, 1370, 1862, 2712, 3112
BseCI ATCGAT 2 cut(s) 47, 402
BseGI GGATG 4 cut(s) 904, 1993, 2752, 3144
BseJI GATNNNNATC 1 cut(s) 3143
BseLI CCNNNNNNNGG 8 cut(s) 209, 235, 236, 299, 2015, 2123, 2412, 2869
BseMI GCAATG 2 cut(s) 425, 3064
BseNI ACTGG 4 cut(s) 1064, 2367, 2448, 2503
BseRI GAGGAG 3 cut(s) 79, 82, 145
BseSI GKGCMC 3 cut(s) 242, 991, 2164
BseXI GCAGC 8 cut(s) 433, 829, 853, 1408, 1763, 2476, 2498, 2749
BseYI CCCAGC 3 cut(s) 616, 990, 1505
Bsh1236I CGCG 2 cut(s) 65, 1436
Bsh1285I CGRYCG 1 cut(s) 2113
BshFI GGCC 6 cut(s) 248, 281, 793, 1248, 2087, 3115
BshNI GGYRCC 3 cut(s) 239, 986, 1358
BshTI ACCGGT 1 cut(s) 2806
BshVI ATCGAT 2 cut(s) 47, 402
BsiEI CGRYCG 1 cut(s) 2113
BsiHKAI GWGCWC 1 cut(s) 2447
BsiHKCI CYCGRG 2 cut(s) 235, 1728
BsiSI CCGG 5 cut(s) 22, 236, 1043, 1729, 2807
BslFI GGGAC 1 cut(s) 1896
BslI CCNNNNNNNGG 8 cut(s) 209, 235, 236, 299, 2015, 2123, 2412, 2869
BsmAI GTCTC 3 cut(s) 365, 1139, 1896
BsmFI GGGAC 1 cut(s) 1896
BsmI GAATGC 2 cut(s) 2759, 2834
BsnI GGCC 6 cut(s) 248, 281, 793, 1248, 2087, 3115
BsoBI CYCGRG 2 cut(s) 235, 1728
Bsp1286I GDGCHC 6 cut(s) 242, 991, 2164, 2275, 2447, 2817
Bsp13I TCCGGA 1 cut(s) 1042
Bsp1407I TGTACA 2 cut(s) 2332, 2902
Bsp19I CCATGG 1 cut(s) 243
BspANI GGCC 6 cut(s) 248, 281, 793, 1248, 2087, 3115
BspDI ATCGAT 2 cut(s) 47, 402
BspEI TCCGGA 1 cut(s) 1042
BspFNI CGCG 2 cut(s) 65, 1436
BspLI GGNNCC 7 cut(s) 214, 241, 988, 1360, 1385, 2457, 3023
BspMAI CTGCAG 2 cut(s) 1159, 1426
BspMI ACCTGC 1 cut(s) 1792
BspOI GCTAGC 1 cut(s) 1640
BspQI GCTCTTC 1 cut(s) 1659
BspT107I GGYRCC 3 cut(s) 239, 986, 1358
BsrBI CCGCTC 1 cut(s) 691
BsrDI GCAATG 2 cut(s) 425, 3064
BsrFI RCCGGY 1 cut(s) 2806
BsrGI TGTACA 2 cut(s) 2332, 2902
BsrI ACTGG 4 cut(s) 1064, 2367, 2448, 2503
BssAI RCCGGY 1 cut(s) 2806
BssNAI GTATAC 3 cut(s) 6, 103, 2661
BssSI CACGAG 1 cut(s) 2990
BssT1I CCWWGG 3 cut(s) 243, 2343, 2428
Bst1107I GTATAC 3 cut(s) 6, 103, 2661
Bst2BI CACGAG 1 cut(s) 2990
Bst2UI CCWGG 9 cut(s) 777, 894, 996, 1250, 1356, 1370, 1862, 2712, 3112
Bst4CI ACNGT 9 cut(s) 731, 1216, 1267, 1395, 1474, 1521, 1587, 1690, 3049
Bst6I CTCTTC 3 cut(s) 100, 1659, 2805
BstAPI GCANNNNNTGC 5 cut(s) 427, 866, 875, 1430, 1757
BstAUI TGTACA 2 cut(s) 2332, 2902
BstBAI YACGTR 1 cut(s) 2120
BstC8I GCNNGC 9 cut(s) 413, 1023, 1323, 1431, 1503, 1638, 1851, 2160, 2855
BstDSI CCRYGG 2 cut(s) 243, 1434
BstF5I GGATG 4 cut(s) 904, 1993, 2752, 3144
BstFNI CGCG 2 cut(s) 65, 1436
BstHHI GCGC 2 cut(s) 65, 2435
BstMAI GTCTC 3 cut(s) 365, 1139, 1896
BstMCI CGRYCG 1 cut(s) 2113
BstNI CCWGG 9 cut(s) 777, 894, 996, 1250, 1356, 1370, 1862, 2712, 3112
BstNSI RCATGY 6 cut(s) 335, 415, 866, 974, 2219, 2909
BstPAI GACNNNNGTC 1 cut(s) 2598
BstSFI CTRYAG 6 cut(s) 82, 1155, 1422, 2024, 2165, 2262
BstSLI GKGCMC 3 cut(s) 242, 991, 2164
BstUI CGCG 2 cut(s) 65, 1436
BstV1I GCAGC 8 cut(s) 433, 829, 853, 1408, 1763, 2476, 2498, 2749
BstV2I GAAGAC 2 cut(s) 1691, 2840
BstX2I RGATCY 8 cut(s) 121, 1183, 1675, 1855, 2290, 2455, 2641, 3021
BstYI RGATCY 8 cut(s) 121, 1183, 1675, 1855, 2290, 2455, 2641, 3021
BstZ17I GTATAC 3 cut(s) 6, 103, 2661
Bsu15I ATCGAT 2 cut(s) 47, 402
Bsu36I CCTNAGG 1 cut(s) 2229
BsuI GTATCC 1 cut(s) 1446
BsuRI GGCC 6 cut(s) 248, 281, 793, 1248, 2087, 3115
BsuTUI ATCGAT 2 cut(s) 47, 402
BtgI CCRYGG 2 cut(s) 243, 1434
BtgZI GCGATG 2 cut(s) 360, 3077
BtrI CACGTC 1 cut(s) 2600
BtsCI GGATG 4 cut(s) 904, 1993, 2752, 3144
BtsI GCAGTG 1 cut(s) 1332
BtsIMutI CAGTG 5 cut(s) 1263, 1332, 1695, 2175, 2455
BveI ACCTGC 1 cut(s) 1792
Cac8I GCNNGC 9 cut(s) 413, 1023, 1323, 1431, 1503, 1638, 1851, 2160, 2855
CaiI CAGNNNCTG 1 cut(s) 1154
CfoI GCGC 2 cut(s) 65, 2435
Cfr10I RCCGGY 1 cut(s) 2806
Cfr13I GGNCC 5 cut(s) 213, 280, 517, 1366, 3159
Cfr42I CCGCGG 1 cut(s) 1437
Cfr9I CCCGGG 2 cut(s) 235, 1728
ClaI ATCGAT 2 cut(s) 47, 402
CseI GACGC 3 cut(s) 379, 419, 2603
CsiI ACCWGGT 1 cut(s) 1368
Csp6I GTAC 8 cut(s) 30, 355, 1286, 1461, 2333, 2419, 2476, 2903
CspAI ACCGGT 1 cut(s) 2806
CspCI CAANNNNNGTGG 2 cut(s) 1506, 1541
CviQI GTAC 8 cut(s) 30, 355, 1286, 1461, 2333, 2419, 2476, 2903
DraI TTTAAA 1 cut(s) 489
DrdI GACNNNNNNGTC 1 cut(s) 1373
DseDI GACNNNNNNGTC 1 cut(s) 1373
EaeI YGGCCR 2 cut(s) 246, 2085
Eam1104I CTCTTC 3 cut(s) 100, 1659, 2805
EarI CTCTTC 3 cut(s) 100, 1659, 2805
Ecl136II GAGCTC 1 cut(s) 2445
Eco130I CCWWGG 3 cut(s) 243, 2343, 2428
Eco24I GRGCYC 3 cut(s) 2275, 2447, 2817
Eco32I GATATC 3 cut(s) 1080, 2191, 2464
Eco47I GGWCC 4 cut(s) 213, 517, 1366, 3159
Eco53kI GAGCTC 1 cut(s) 2445
Eco57I CTGAAG 5 cut(s) 1224, 1931, 2015, 2306, 2781
Eco81I CCTNAGG 1 cut(s) 2229
Eco88I CYCGRG 2 cut(s) 235, 1728
EcoICRI GAGCTC 1 cut(s) 2445
EcoO109I RGGNCCY 4 cut(s) 213, 280, 1366, 3159
EcoRI GAATTC 1 cut(s) 477
EcoRII CCWGG 9 cut(s) 775, 892, 994, 1248, 1354, 1368, 1860, 2710, 3110
EcoRV GATATC 3 cut(s) 1080, 2191, 2464
EcoT14I CCWWGG 3 cut(s) 243, 2343, 2428
EcoT22I ATGCAT 2 cut(s) 972, 2381
EcoT38I GRGCYC 3 cut(s) 2275, 2447, 2817
ErhI CCWWGG 3 cut(s) 243, 2343, 2428
FalI AAGNNNNNCTT 2 cut(s) 2571, 2603
FaqI GGGAC 1 cut(s) 1896
FauI CCCGC 1 cut(s) 1842
FblI GTMKAC 4 cut(s) 5, 102, 433, 2660
FokI GGATG 4 cut(s) 891, 2000, 2759, 3151
FriOI GRGCYC 3 cut(s) 2275, 2447, 2817
FspBI CTAG 6 cut(s) 294, 1142, 1551, 1637, 1652, 2429
GlaI GCGC 2 cut(s) 64, 2434
GsaI CCCAGC 3 cut(s) 620, 994, 1509
GsuI CTGGAG 2 cut(s) 2431, 3094
HaeIII GGCC 6 cut(s) 248, 281, 793, 1248, 2087, 3115
HapII CCGG 5 cut(s) 22, 236, 1043, 1729, 2807
HgaI GACGC 3 cut(s) 379, 419, 2603
HhaI GCGC 2 cut(s) 65, 2435
Hin6I GCGC 2 cut(s) 63, 2433
HinP1I GCGC 2 cut(s) 63, 2433
HincII GTYRAC 4 cut(s) 36, 434, 2129, 3078
HindII GTYRAC 4 cut(s) 36, 434, 2129, 3078
HindIII AAGCTT 3 cut(s) 1115, 1206, 2585
HpaI GTTAAC 1 cut(s) 3078
HpaII CCGG 5 cut(s) 22, 236, 1043, 1729, 2807
HphI GGTGA 4 cut(s) 674, 1924, 2638, 2851
Hpy99I CGWCG 2 cut(s) 395, 435
HpyAV CCTTC 9 cut(s) 170, 653, 750, 1361, 1761, 1841, 1955, 2681, 3179
HpyCH4III ACNGT 9 cut(s) 731, 1216, 1267, 1395, 1474, 1521, 1587, 1690, 3049
HpyCH4IV ACGT 7 cut(s) 32, 287, 323, 1591, 2119, 2599, 3080
HpySE526I ACGT 7 cut(s) 32, 287, 323, 1591, 2119, 2599, 3080
HspAI GCGC 2 cut(s) 63, 2433
Kpn2I TCCGGA 1 cut(s) 1042
KspAI GTTAAC 1 cut(s) 3078
KspI CCGCGG 1 cut(s) 1437
LguI GCTCTTC 1 cut(s) 1659
LmnI GCTCC 6 cut(s) 92, 778, 2450, 2518, 2725, 2872
Lsp1109I GCAGC 8 cut(s) 433, 829, 853, 1408, 1763, 2476, 2498, 2749
LweI GCATC 7 cut(s) 561, 603, 878, 913, 957, 2065, 2884
MabI ACCWGGT 1 cut(s) 1368
MaeI CTAG 6 cut(s) 294, 1142, 1551, 1637, 1652, 2429
MaeII ACGT 7 cut(s) 32, 287, 323, 1591, 2119, 2599, 3080
MaeIII GTNAC 8 cut(s) 334, 625, 955, 1587, 2053, 2524, 2678, 3081
MbiI CCGCTC 1 cut(s) 691
MfeI CAATTG 2 cut(s) 1281, 2220
MflI RGATCY 8 cut(s) 121, 1183, 1675, 1855, 2290, 2455, 2641, 3021
MhlI GDGCHC 6 cut(s) 242, 991, 2164, 2275, 2447, 2817
MlsI TGGCCA 1 cut(s) 2087
MluNI TGGCCA 1 cut(s) 2087
MlyI GAGTC 4 cut(s) 126, 443, 853, 1339
MmeI TCCRAC 2 cut(s) 1786, 1965
Mox20I TGGCCA 1 cut(s) 2087
Mph1103I ATGCAT 2 cut(s) 972, 2381
MroI TCCGGA 1 cut(s) 1042
MroXI GAANNNNTTC 1 cut(s) 2257
MscI TGGCCA 1 cut(s) 2087
MslI CAYNNNNRTG 4 cut(s) 269, 404, 416, 542
Msp20I TGGCCA 1 cut(s) 2087
MspA1I CMGCKG 5 cut(s) 1202, 1381, 1436, 2489, 3192
MspI CCGG 5 cut(s) 22, 236, 1043, 1729, 2807
MunI CAATTG 2 cut(s) 1281, 2220
Mva1269I GAATGC 2 cut(s) 2759, 2834
MvaI CCWGG 9 cut(s) 777, 894, 996, 1250, 1356, 1370, 1862, 2712, 3112
MvnI CGCG 2 cut(s) 65, 1436
NciI CCSGG 4 cut(s) 236, 237, 1729, 1730
NcoI CCATGG 1 cut(s) 243
NheI GCTAGC 1 cut(s) 1636
NlaIV GGNNCC 7 cut(s) 214, 241, 988, 1360, 1385, 2457, 3023
NmeAIII GCCGAG 2 cut(s) 431, 1387
NmuCI GTSAC 5 cut(s) 334, 625, 1587, 2053, 2524
NsiI ATGCAT 2 cut(s) 972, 2381
NspI RCATGY 6 cut(s) 335, 415, 866, 974, 2219, 2909
PaeI GCATGC 1 cut(s) 415
PasI CCCWGGG 1 cut(s) 1861
PciI ACATGT 1 cut(s) 2905
PciSI GCTCTTC 1 cut(s) 1659
PcsI WCGNNNNNNNCGW 2 cut(s) 399, 2829
PctI GAATGC 2 cut(s) 2759, 2834
PdmI GAANNNNTTC 1 cut(s) 2257
PflMI CCANNNNNTGG 2 cut(s) 2123, 2869
PfoI TCCNGGA 1 cut(s) 2710
PinAI ACCGGT 1 cut(s) 2806
Ple19I CGATCG 1 cut(s) 2113
PleI GAGTC 4 cut(s) 126, 443, 852, 1338
PpsI GAGTC 4 cut(s) 126, 443, 852, 1338
Ppu21I YACGTR 1 cut(s) 2120
PpuMI RGGWCCY 3 cut(s) 213, 1366, 3159
PscI ACATGT 1 cut(s) 2905
PshAI GACNNNNGTC 1 cut(s) 2598
PshBI ATTAAT 1 cut(s) 2610
Psp124BI GAGCTC 1 cut(s) 2447
Psp1406I AACGTT 2 cut(s) 287, 3080
Psp5II RGGWCCY 3 cut(s) 213, 1366, 3159
Psp6I CCWGG 9 cut(s) 775, 892, 994, 1248, 1354, 1368, 1860, 2710, 3110
PspFI CCCAGC 3 cut(s) 616, 990, 1505
PspGI CCWGG 9 cut(s) 775, 892, 994, 1248, 1354, 1368, 1860, 2710, 3110
PspN4I GGNNCC 7 cut(s) 214, 241, 988, 1360, 1385, 2457, 3023
PspPI GGNCC 5 cut(s) 213, 280, 517, 1366, 3159
PspPPI RGGWCCY 3 cut(s) 213, 1366, 3159
PstI CTGCAG 2 cut(s) 1159, 1426
PstNI CAGNNNCTG 1 cut(s) 1154
PsuI RGATCY 8 cut(s) 121, 1183, 1675, 1855, 2290, 2455, 2641, 3021
PvuI CGATCG 1 cut(s) 2113
PvuII CAGCTG 3 cut(s) 1202, 2489, 3192
RsaI GTAC 8 cut(s) 31, 356, 1287, 1462, 2334, 2420, 2477, 2904
RsaNI GTAC 8 cut(s) 30, 355, 1286, 1461, 2333, 2419, 2476, 2903
RseI CAYNNNNRTG 4 cut(s) 269, 404, 416, 542
SacI GAGCTC 1 cut(s) 2447
SacII CCGCGG 1 cut(s) 1437
SalI GTCGAC 1 cut(s) 432
SapI GCTCTTC 1 cut(s) 1659
Sau96I GGNCC 5 cut(s) 213, 280, 517, 1366, 3159
SchI GAGTC 4 cut(s) 126, 443, 853, 1339
SduI GDGCHC 6 cut(s) 242, 991, 2164, 2275, 2447, 2817
SexAI ACCWGGT 1 cut(s) 1368
SfaNI GCATC 7 cut(s) 561, 603, 878, 913, 957, 2065, 2884
SfcI CTRYAG 6 cut(s) 82, 1155, 1422, 2024, 2165, 2262
Sfr303I CCGCGG 1 cut(s) 1437
SgrBI CCGCGG 1 cut(s) 1437
SinI GGWCC 4 cut(s) 213, 517, 1366, 3159
SmaI CCCGGG 2 cut(s) 237, 1730
SmiMI CAYNNNNRTG 4 cut(s) 269, 404, 416, 542
SmlI CTYRAG 2 cut(s) 495, 2276
SmoI CTYRAG 2 cut(s) 495, 2276
SphI GCATGC 1 cut(s) 415
SrfI GCCCGGGC 1 cut(s) 1730
SspI AATATT 2 cut(s) 531, 3007
SspMI CTAG 6 cut(s) 294, 1142, 1551, 1637, 1652, 2429
SstI GAGCTC 1 cut(s) 2447
StyI CCWWGG 3 cut(s) 243, 2343, 2428
TaaI ACNGT 9 cut(s) 731, 1216, 1267, 1395, 1474, 1521, 1587, 1690, 3049
TaiI ACGT 7 cut(s) 35, 290, 326, 1594, 2122, 2602, 3083
TaqI TCGA 5 cut(s) 47, 402, 433, 1171, 2241
TatI WGTACW 5 cut(s) 354, 2332, 2418, 2475, 2902
TauI GCSGC 5 cut(s) 251, 254, 382, 1436, 2946
TscAI CASTG 5 cut(s) 1270, 1332, 1695, 2182, 2455
TseFI GTSAC 5 cut(s) 334, 625, 1587, 2053, 2524
TseI GCWGC 9 cut(s) 421, 817, 866, 1421, 1751, 2486, 2489, 2737, 3189
Tsp45I GTSAC 5 cut(s) 334, 625, 1587, 2053, 2524
TspGWI ACGGA 3 cut(s) 856, 1448, 1952
TspMI CCCGGG 2 cut(s) 235, 1728
TspRI CASTG 5 cut(s) 1270, 1332, 1695, 2182, 2455
Van91I CCANNNNNTGG 2 cut(s) 2123, 2869
VpaK11BI GGWCC 4 cut(s) 213, 517, 1366, 3159
VspI ATTAAT 1 cut(s) 2610
XapI RAATTY 5 cut(s) 56, 477, 1481, 1772, 3093
XceI RCATGY 6 cut(s) 335, 415, 866, 974, 2219, 2909
XcmI CCANNNNNNNNNTGG 1 cut(s) 3123
XmaI CCCGGG 2 cut(s) 235, 1728
XmaJI CCTAGG 1 cut(s) 2428
XmiI GTMKAC 4 cut(s) 5, 102, 433, 2660
XmnI GAANNNNTTC 1 cut(s) 2257
XspI CTAG 6 cut(s) 294, 1142, 1551, 1637, 1652, 2429
Zsp2I ATGCAT 2 cut(s) 972, 2381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.