Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Reverse (-)

26181677 .. 26182999

Gene Structure 1323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGTCTTCCCCTTCACTAACCGTGTCACTGCCCTCCATAGTCATTATCTCACTCTTTGCCTTCATTGCTCAAGCCCAAGTTCCAGCAAATGAAACTTTCAAGTTTGTCAACGAAGGCGAATATTGGCCTAATATTGTAGAATATGATGCAAGCTATCGCATGCTTGATCTCTTTGCCTCCCCCTTCCAATTCGCTTTCTACAACACCACCCCAGATGCCTTCACTCTTGCTCTACGCATGGGTTTGAGGAGGTCGGAATCGGGGTTTTATTGGGTTTGGGAGGCCAATCGGGGAAAACCAGTCGGCCAAAATGCCACCTTCGCATTTGGGACTGATGGCAACCTGGTCTTGGCCGATGCCGATGGCCAAGTGGCTTGGCAAAGCAACACCGCCAACAAAGGTGTGGTAGGCTTCAAGTTGCTTTCAACTGGCAATATTGTACTTTATGACTCAAAGGGTAACTTTGTTTGGCAAAGTTTTCACCACCCATCAGACACTTTGTTAGTGGGTCAATCTCTGCGTGCCGGGGGAGTAAGCAAGCTTGTGAGTCGGGCCTCGGAGGTAGAAAACAAAGACGGGTCTTATAGCTTGGTGATGGAGCCGAAAGGTTTGTCTTTGTACTATAAAAGCAAGAACTCACCAAGACCATTACTCTACTTCACATCCTCCAAATGGATCAATGTTCAAAAGGGCTCACTGAACCATGTGACACTGAAAGCTTCGCCGGACACTCAAGAGGGCTTTGCTTACGACTTGAGCTTGGACTACGTTGAGGGAAACTCCACCACCGGTGGAAATGTCCTTCTTGCTAGACCCAAATACAATAGCACATCAACATTCCTTAGGCTGGAAATTAATGGAAATTTGAGGCTTCACACTTACTATAGGATATTACGTTACGGTGCATGGGAGGTGACCTTCAGTCTTTTCGATAAAACTTCAAAATGGGAAAGCGAGTGCCAATTGCCAGAGCGATGCGGGAAGTTCGGCATTTGTGAGGACAGCCAATGTGTTGCTTGCCCATCTTCTAAGGGACTATTGGGTTGGAGCGAGACTTGTGAGCCTGAGAACAAGTACACAAAGGGAGACTCAATCAAAGAGAGTGATTGTGCTAAGAAGTGTACATTGGATTGCAAATGTTTGGGCTACTTCTACAACCAAGATACATCAAAGTGTTGGATTGCTTATGATTTGAAAACCCTAACCAAAGTTGCTAATTCCACTCATGTGGGTTACATCAAAGCACCTAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

419

Amino Acids

46.61

Weight (kDa)

7.9

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	92 - 175	5.6e-18	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	390, 978
AclWI	GGATC	1 cut(s)	683
AcoI	YGGCCR	3 cut(s)	304, 351, 364
AcsI	RAATTY	1 cut(s)	862
AcuI	CTGAAG	1 cut(s)	904
AfaI	GTAC	4 cut(s)	441, 620, 1076, 1123
AfiI	CCNNNNNNNGG	3 cut(s)	349, 672, 847
AgeI	ACCGGT	1 cut(s)	788
AgsI	TTSAA	6 cut(s)	100, 415, 426, 686, 942, 1195
AhdI	GACNNNNNGTC	1 cut(s)	921
AjnI	CCWGG	1 cut(s)	342
AjuI	GAANNNNNNNTTGG	2 cut(s)	1109, 1141
AleI	CACNNNNGTG	1 cut(s)	1226
AluBI	AGCT	5 cut(s)	153, 541, 588, 719, 759
AluI	AGCT	5 cut(s)	153, 541, 588, 719, 759
Alw26I	GTCTC	2 cut(s)	1046, 1080
AlwI	GGATC	1 cut(s)	683
AoxI	GGCC	6 cut(s)	125, 282, 304, 351, 364, 552
ApoI	RAATTY	1 cut(s)	862
ArsI	GACNNNNNNTTYG	2 cut(s)	596, 628
AseI	ATTAAT	1 cut(s)	855
AsiGI	ACCGGT	1 cut(s)	788
AspS9I	GGNCC	1 cut(s)	552
AsuC2I	CCSGG	1 cut(s)	526
AsuHPI	GGTGA	4 cut(s)	473, 604, 630, 925
AxyI	CCTNAGG	1 cut(s)	842
BalI	TGGCCA	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	695
BccI	CCATC	5 cut(s)	329, 356, 496, 589, 1030
BciT130I	CCWGG	1 cut(s)	344
BcnI	CCSGG	1 cut(s)	526
BcoDI	GTCTC	2 cut(s)	1046, 1080
BfaI	CTAG	2 cut(s)	810, 1255
BfmI	CTRYAG	1 cut(s)	883
Bme1390I	CCNGG	2 cut(s)	344, 526
BmeRI	GACNNNNNGTC	1 cut(s)	921
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	2 cut(s)	344, 526
BmsI	GCATC	4 cut(s)	136, 205, 346, 965
BplI	GAGNNNNNCTC	2 cut(s)	764, 796
BpuEI	CTTGAG	3 cut(s)	54, 717, 775
BpuMI	CCSGG	1 cut(s)	526
BsaJI	CCNNGG	2 cut(s)	525, 555
BsaWI	WCCGGW	1 cut(s)	788
Bsc4I	CCNNNNNNNGG	3 cut(s)	349, 672, 847
Bse118I	RCCGGY	1 cut(s)	788
Bse1I	ACTGG	2 cut(s)	299, 433
Bse21I	CCTNAGG	1 cut(s)	842
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	2 cut(s)	525, 555
BseGI	GGATG	1 cut(s)	662
BseLI	CCNNNNNNNGG	3 cut(s)	349, 672, 847
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	1056
BseNI	ACTGG	2 cut(s)	299, 433
BseRI	GAGGAG	1 cut(s)	262
BshFI	GGCC	6 cut(s)	127, 284, 306, 353, 366, 554
BshTI	ACCGGT	1 cut(s)	788
BsiSI	CCGG	3 cut(s)	525, 725, 789
BslFI	GGGAC	2 cut(s)	343, 1047
BslI	CCNNNNNNNGG	3 cut(s)	349, 672, 847
BsmAI	GTCTC	2 cut(s)	1046, 1080
BsmFI	GGGAC	2 cut(s)	343, 1047
BsnI	GGCC	6 cut(s)	127, 284, 306, 353, 366, 554
Bsp1286I	GDGCHC	1 cut(s)	695
Bsp1407I	TGTACA	1 cut(s)	1121
Bsp143I	GATC	2 cut(s)	166, 675
BspACI	CCGC	2 cut(s)	390, 978
BspANI	GGCC	6 cut(s)	127, 284, 306, 353, 366, 554
BspCNI	CTCAG	1 cut(s)	1057
BspLI	GGNNCC	1 cut(s)	600
BspPI	GGATC	1 cut(s)	683
BsrDI	GCAATG	1 cut(s)	63
BsrFI	RCCGGY	1 cut(s)	788
BsrGI	TGTACA	1 cut(s)	1121
BsrI	ACTGG	2 cut(s)	299, 433
BssAI	RCCGGY	1 cut(s)	788
BssECI	CCNNGG	2 cut(s)	525, 555
BssMI	GATC	2 cut(s)	166, 675
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	2 cut(s)	22, 902
BstAUI	TGTACA	1 cut(s)	1121
BstC8I	GCNNGC	5 cut(s)	151, 161, 522, 539, 1018
BstDEI	CTNAG	4 cut(s)	842, 1029, 1065, 1113
BstEII	GGTNACC	1 cut(s)	913
BstF5I	GGATG	1 cut(s)	662
BstKTI	GATC	2 cut(s)	169, 678
BstMAI	GTCTC	2 cut(s)	1046, 1080
BstMBI	GATC	2 cut(s)	166, 675
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 320
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	163
BstPI	GGTNACC	1 cut(s)	913
BstSCI	CCNGG	2 cut(s)	342, 524
BstSFI	CTRYAG	1 cut(s)	883
BstXI	CCANNNNNNTGG	1 cut(s)	1228
Bsu36I	CCTNAGG	1 cut(s)	842
BsuRI	GGCC	6 cut(s)	127, 284, 306, 353, 366, 554
BtgZI	GCGATG	1 cut(s)	988
BtsCI	GGATG	1 cut(s)	662
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	3 cut(s)	26, 695, 710
Cac8I	GCNNGC	5 cut(s)	151, 161, 522, 539, 1018
Cfr10I	RCCGGY	1 cut(s)	788
Cfr13I	GGNCC	1 cut(s)	552
CsiI	ACCWGGT	1 cut(s)	342
Csp6I	GTAC	4 cut(s)	440, 619, 1075, 1122
CspAI	ACCGGT	1 cut(s)	788
CviAII	CATG	5 cut(s)	160, 238, 704, 906, 1226
CviQI	GTAC	4 cut(s)	440, 619, 1075, 1122
DdeI	CTNAG	4 cut(s)	842, 1029, 1065, 1113
DpnI	GATC	2 cut(s)	168, 677
DpnII	GATC	2 cut(s)	166, 675
DriI	GACNNNNNGTC	1 cut(s)	921
EaeI	YGGCCR	3 cut(s)	304, 351, 364
Eam1105I	GACNNNNNGTC	1 cut(s)	921
Eco24I	GRGCYC	1 cut(s)	695
Eco57I	CTGAAG	1 cut(s)	904
Eco81I	CCTNAGG	1 cut(s)	842
Eco91I	GGTNACC	1 cut(s)	913
EcoO65I	GGTNACC	1 cut(s)	913
EcoRII	CCWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	695
FaeI	CATG	5 cut(s)	163, 241, 707, 909, 1229
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	2 cut(s)	343, 1047
FatI	CATG	5 cut(s)	159, 237, 703, 905, 1225
FauI	CCCGC	1 cut(s)	971
FokI	GGATG	1 cut(s)	649
FriOI	GRGCYC	1 cut(s)	695
FspBI	CTAG	2 cut(s)	810, 1255
HaeIII	GGCC	6 cut(s)	127, 284, 306, 353, 366, 554
HapII	CCGG	3 cut(s)	525, 725, 789
Hin1II	CATG	5 cut(s)	163, 241, 707, 909, 1229
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	2 cut(s)	539, 717
HinfI	GANTC	4 cut(s)	257, 449, 547, 1088
HpaII	CCGG	3 cut(s)	525, 725, 789
HphI	GGTGA	4 cut(s)	473, 604, 630, 925
Hpy166II	GTNNAC	3 cut(s)	109, 1077, 1122
Hpy188I	TCNGA	3 cut(s)	256, 493, 559
Hpy188III	TCNNGA	1 cut(s)	734
Hpy8I	GTNNAC	3 cut(s)	109, 1077, 1122
HpyAV	CCTTC	8 cut(s)	21, 70, 107, 193, 229, 328, 812, 928
HpyCH4III	ACNGT	2 cut(s)	22, 902
HpyCH4IV	ACGT	2 cut(s)	768, 895
HpyCH4V	TGCA	3 cut(s)	149, 905, 1134
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 320
HpyF3I	CTNAG	4 cut(s)	842, 1029, 1065, 1113
HpySE526I	ACGT	2 cut(s)	768, 895
Hsp92II	CATG	5 cut(s)	163, 241, 707, 909, 1229
Kzo9I	GATC	2 cut(s)	166, 675
LmnI	GCTCC	2 cut(s)	598, 1047
LweI	GCATC	4 cut(s)	136, 205, 346, 965
MabI	ACCWGGT	1 cut(s)	342
MaeI	CTAG	2 cut(s)	810, 1255
MaeII	ACGT	2 cut(s)	768, 895
MaeIII	GTNAC	6 cut(s)	24, 458, 706, 896, 913, 1232
MalI	GATC	2 cut(s)	168, 677
MboI	GATC	2 cut(s)	166, 675
MboII	GAAGA	1 cut(s)	1017
MfeI	CAATTG	1 cut(s)	962
MhlI	GDGCHC	1 cut(s)	695
MlsI	TGGCCA	1 cut(s)	366
MluCI	AATT	5 cut(s)	188, 852, 862, 962, 1216
MluNI	TGGCCA	1 cut(s)	366
MlyI	GAGTC	3 cut(s)	443, 556, 1082
MmeI	TCCRAC	3 cut(s)	234, 1025, 1157
Mox20I	TGGCCA	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	366
MseI	TTAA	1 cut(s)	855
MslI	CAYNNNNRTG	2 cut(s)	1171, 1226
Msp20I	TGGCCA	1 cut(s)	366
MspI	CCGG	3 cut(s)	525, 725, 789
MspR9I	CCNGG	2 cut(s)	344, 526
MunI	CAATTG	1 cut(s)	962
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	65, 320
NciI	CCSGG	1 cut(s)	526
NdeII	GATC	2 cut(s)	166, 675
NlaIII	CATG	5 cut(s)	163, 241, 707, 909, 1229
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	3 cut(s)	24, 706, 913
NspI	RCATGY	1 cut(s)	163
OliI	CACNNNNGTG	1 cut(s)	1226
PaeI	GCATGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	257
PinAI	ACCGGT	1 cut(s)	788
PleI	GAGTC	3 cut(s)	443, 555, 1082
PpsI	GAGTC	3 cut(s)	443, 555, 1082
PshBI	ATTAAT	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	342
PspEI	GGTNACC	1 cut(s)	913
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	1 cut(s)	552
RsaI	GTAC	4 cut(s)	441, 620, 1076, 1123
RsaNI	GTAC	4 cut(s)	440, 619, 1075, 1122
RseI	CAYNNNNRTG	2 cut(s)	1171, 1226
SaqAI	TTAA	1 cut(s)	855
Sau3AI	GATC	2 cut(s)	166, 675
Sau96I	GGNCC	1 cut(s)	552
SchI	GAGTC	3 cut(s)	443, 556, 1082
ScrFI	CCNGG	2 cut(s)	344, 526
SduI	GDGCHC	1 cut(s)	695
SexAI	ACCWGGT	1 cut(s)	342
SfaNI	GCATC	4 cut(s)	136, 205, 346, 965
SfcI	CTRYAG	1 cut(s)	883
SgrAI	CRCCGGYG	1 cut(s)	788
SmiMI	CAYNNNNRTG	2 cut(s)	1171, 1226
SmlI	CTYRAG	3 cut(s)	69, 732, 754
SmoI	CTYRAG	3 cut(s)	69, 732, 754
SphI	GCATGC	1 cut(s)	163
Sse9I	AATT	5 cut(s)	188, 852, 862, 962, 1216
SsiI	CCGC	2 cut(s)	390, 978
SspI	AATATT	3 cut(s)	122, 133, 436
SspMI	CTAG	2 cut(s)	810, 1255
StyD4I	CCNGG	2 cut(s)	342, 524
TaaI	ACNGT	2 cut(s)	22, 902
TaiI	ACGT	2 cut(s)	771, 898
TaqI	TCGA	1 cut(s)	930
TasI	AATT	5 cut(s)	188, 852, 862, 962, 1216
TatI	WGTACW	4 cut(s)	439, 618, 1074, 1121
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	855
Tru9I	TTAA	1 cut(s)	855
TscAI	CASTG	3 cut(s)	33, 702, 717
TseFI	GTSAC	3 cut(s)	24, 706, 913
Tsp45I	GTSAC	3 cut(s)	24, 706, 913
TspDTI	ATGAA	2 cut(s)	52, 105
TspRI	CASTG	3 cut(s)	33, 702, 717
VspI	ATTAAT	1 cut(s)	855
XapI	RAATTY	1 cut(s)	862
XceI	RCATGY	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XspI	CTAG	2 cut(s)	810, 1255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.