Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000809

Physical Location & Seq

Genomic Coordinates Forward (+)

10052410 .. 10052877

Gene Structure 468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g14040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCAGCTAGTGAAGCAAAGAAGAAGAAGATAGCCATCATCGCCGTATTGGTTGTACTTCTGATGGCGATGATAGTGGCGGTGACGGTGGGTGTCAAAATGGCCAAAAAGGGCAACAAGAAGCCTGCCAAGGTTGGTGCGAAGAAAAAGGCCATCGAGACCATATGCCAGCCCACCACCTACAAAGAAACCTGCCAAAGCAGCCTCGAAAAGGAGGCAGGTGACACCACCGACCCAAAGGACCTGATCAAGGCCGGGTTCAAGGTGGCGGCGGACAAAGTTAACGAGGTGATCAAGAATTCGAACACCTTGAAAGAGCATGCCAAGGATCCAATGACCAGCCAGGCTCTCGGCGTGTGCAAGGAATTGTTGGAAACCGCAGTTGAAGATCTCCTCGGCGCGGTTGATAAGATGGGGCCATTCGATGCTAGCAAGATCGATGACTACCTTGCAGATCTCAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

156

Amino Acids

16.55

Weight (kDa)

9.0

Isoelectric Point (pI)

14.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	50 - 148	2.8e-17	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05610 AT3G06830 AT4G15980 AT4G15980 AT5G27870 AT5G49180
fragaria_vesca	FvH4_4g18670 FvH4_4g18670 FvH4_4g18670 FvH4_4g18690 FvH4_4g18690
malus_domestica	MD04G1198100.v1.1 MD12G1210700.v1.1 MD13G1164500.v1.1 MD13G1164600.v1.1 MD13G1164700.v1.1 MD13G1164800.v1.1 MD16G1164200.v1.1 MD16G1164300.v1.1
prunus_persica	Prupe.1G123500_v2.0.a1 Prupe.1G123700_v2.0.a1 Prupe.1G123800_v2.0.a1 Prupe.1G131900_v2.0.a1 Prupe.1G132000_v2.0.a1 Prupe.1G132300_v2.0.a1 Prupe.6G318600_v2.0.a1
pyrus_communis	pycom13g14040
rosa_chinensis	RchiOBHm_Chr2g0115181 RchiOBHm_Chr3g0456331 RchiOBHm_Chr4g0423371 RchiOBHm_Chr4g0423391
rosa_laevigata	RLG00000007564 RLG00000007566 RLG00000018164 RLG00000025312
rosa_multiflora	Rmu_co8436939.1_g000001 Rmu_sc0002607.1_g000023 Rmu_sc0002784.1_g000024 Rmu_sc0005307.1_g000019 Rmu_sc0018054.1_g000005 Rmu_sc0031272.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130660 Rroxscaffold_5G00365560 Rroxscaffold_5G00365590
rosa_rugosa	Rorug02G0194200 Rorug04G0186900 Rorug04G0187000 Rorug04G0187100 Rorug04G0187200
rosa_samantha	Rh2AG252700 Rh2BG262300 Rh2CG257300 Rh2DG260900 Rh3BG074700 Rh3CG074300 Rh3DG076200 Rh4AG246000 Rh4AG246100 Rh4BG251500 Rh4BG251600 Rh4CG259800 Rh4CG260100 Rh4DG246400 Rh4DG247000
rosa_wichuraiana	Rw2G019710 Rw3G006230 Rw4G021140 Rw4G021150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	209
Acc36I	ACCTGC	2 cut(s)	200, 209
AccII	CGCG	1 cut(s)	401
AciI	CCGC	5 cut(s)	80, 269, 272, 378, 401
AclWI	GGATC	2 cut(s)	323, 336
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	298
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	3 cut(s)	211, 250, 400
AgsI	TTSAA	3 cut(s)	262, 313, 386
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	2 cut(s)	323, 336
AoxI	GGCC	4 cut(s)	102, 150, 252, 416
ApeKI	GCWGC	2 cut(s)	5, 201
ApoI	RAATTY	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	241, 416
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	3 cut(s)	94, 233, 301
AsuII	TTCGAA	1 cut(s)	302
AsuNHI	GCTAGC	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	241
BalI	TGGCCA	1 cut(s)	104
BamHI	GGATCC	1 cut(s)	328
BbvI	GCAGC	2 cut(s)	17, 213
BccI	CCATC	4 cut(s)	44, 58, 161, 406
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	344
BclI	TGATCA	2 cut(s)	246, 291
BcnI	CCSGG	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	2 cut(s)	9, 429
BfuAI	ACCTGC	2 cut(s)	200, 209
BglII	AGATCT	2 cut(s)	388, 454
BisI	GCNGC	3 cut(s)	6, 202, 270
BlsI	GCNGC	3 cut(s)	7, 203, 271
Bme1390I	CCNGG	2 cut(s)	256, 344
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	2 cut(s)	241, 416
BmiI	GGNNCC	2 cut(s)	330, 417
BmrFI	CCNGG	2 cut(s)	256, 344
BmsI	GCATC	1 cut(s)	415
BmtI	GCTAGC	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	256
Bsa29I	ATCGAT	1 cut(s)	438
BsaBI	GATNNNNATC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	129, 324, 394
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 250, 400
Bse8I	GATNNNNATC	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	344
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	3 cut(s)	129, 324, 394
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	3 cut(s)	211, 250, 400
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	2 cut(s)	17, 213
Bsh1236I	CGCG	1 cut(s)	401
BshFI	GGCC	4 cut(s)	104, 152, 254, 418
BshVI	ATCGAT	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	255
BslI	CCNNNNNNNGG	3 cut(s)	211, 250, 400
BsmAI	GTCTC	1 cut(s)	152
BsnI	GGCC	4 cut(s)	104, 152, 254, 418
Bso31I	GGTCTC	1 cut(s)	152
Bsp119I	TTCGAA	1 cut(s)	302
Bsp143I	GATC	6 cut(s)	246, 291, 328, 388, 435, 454
BspACI	CCGC	5 cut(s)	80, 269, 272, 378, 401
BspANI	GGCC	4 cut(s)	104, 152, 254, 418
BspDI	ATCGAT	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	401
BspLI	GGNNCC	2 cut(s)	330, 417
BspMI	ACCTGC	2 cut(s)	200, 209
BspOI	GCTAGC	1 cut(s)	432
BspPI	GGATC	2 cut(s)	323, 336
BspT104I	TTCGAA	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	129, 324, 394
BssMI	GATC	6 cut(s)	246, 291, 328, 388, 435, 454
BssT1I	CCWWGG	2 cut(s)	129, 324
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	302
BstC8I	GCNNGC	4 cut(s)	126, 170, 321, 430
BstENI	CCTNNNNNAGG	2 cut(s)	209, 248
BstFNI	CGCG	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	6 cut(s)	249, 294, 331, 391, 438, 457
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	6 cut(s)	246, 291, 328, 388, 435, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 41, 201
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	254, 342
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	2 cut(s)	17, 213
BstX2I	RGATCY	3 cut(s)	328, 388, 454
BstYI	RGATCY	3 cut(s)	328, 388, 454
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	4 cut(s)	104, 152, 254, 418
BsuTUI	ATCGAT	1 cut(s)	438
BtgZI	GCGATG	2 cut(s)	25, 83
BveI	ACCTGC	2 cut(s)	200, 209
Cac8I	GCNNGC	4 cut(s)	126, 170, 321, 430
CfoI	GCGC	1 cut(s)	401
Cfr13I	GGNCC	2 cut(s)	241, 416
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	1 cut(s)	320
CviQI	GTAC	1 cut(s)	56
DpnI	GATC	6 cut(s)	248, 293, 330, 390, 437, 456
DpnII	GATC	6 cut(s)	246, 291, 328, 388, 435, 454
EaeI	YGGCCR	1 cut(s)	102
EciI	GGCGGA	1 cut(s)	287
Eco130I	CCWWGG	2 cut(s)	129, 324
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	241
EcoNI	CCTNNNNNAGG	2 cut(s)	209, 248
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	2 cut(s)	129, 324
ErhI	CCWWGG	2 cut(s)	129, 324
FaeI	CATG	1 cut(s)	323
FaiI	YATR	3 cut(s)	164, 166, 321
FatI	CATG	1 cut(s)	319
FauNDI	CATATG	1 cut(s)	164
FbaI	TGATCA	2 cut(s)	246, 291
Fnu4HI	GCNGC	3 cut(s)	6, 202, 270
Fsp4HI	GCNGC	3 cut(s)	6, 202, 270
FspBI	CTAG	2 cut(s)	9, 429
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	3 cut(s)	6, 202, 270
HaeIII	GGCC	4 cut(s)	104, 152, 254, 418
HapII	CCGG	1 cut(s)	255
HhaI	GCGC	1 cut(s)	401
Hin1II	CATG	1 cut(s)	323
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HpaI	GTTAAC	1 cut(s)	283
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	3 cut(s)	94, 233, 301
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	2 cut(s)	157, 295
Hpy8I	GTNNAC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	360, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 41, 201
Hsp92II	CATG	1 cut(s)	323
HspAI	GCGC	1 cut(s)	399
Ksp22I	TGATCA	2 cut(s)	246, 291
KspAI	GTTAAC	1 cut(s)	283
Kzo9I	GATC	6 cut(s)	246, 291, 328, 388, 435, 454
LpnPI	CCDG	9 cut(s)	138, 182, 204, 205, 257, 268, 329, 352, 356
Lsp1109I	GCAGC	2 cut(s)	17, 213
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	2 cut(s)	9, 429
MaeIII	GTNAC	2 cut(s)	82, 221
MalI	GATC	6 cut(s)	248, 293, 330, 390, 437, 456
MboI	GATC	6 cut(s)	246, 291, 328, 388, 435, 454
MboII	GAAGA	5 cut(s)	34, 37, 40, 154, 398
MflI	RGATCY	3 cut(s)	328, 388, 454
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	2 cut(s)	298, 365
MluNI	TGGCCA	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	4 cut(s)	208, 215, 280, 404
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	104
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	2 cut(s)	256, 344
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	3 cut(s)	14, 41, 201
NciI	CCSGG	1 cut(s)	256
NdeI	CATATG	1 cut(s)	164
NdeII	GATC	6 cut(s)	246, 291, 328, 388, 435, 454
NheI	GCTAGC	1 cut(s)	428
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	2 cut(s)	330, 417
NmeAIII	GCCGAG	2 cut(s)	330, 375
NmuCI	GTSAC	2 cut(s)	82, 221
NspI	RCATGY	1 cut(s)	323
NspV	TTCGAA	1 cut(s)	302
PaeI	GCATGC	1 cut(s)	323
PaqCI	CACCTGC	1 cut(s)	209
PkrI	GCNGC	3 cut(s)	7, 203, 271
PpuMI	RGGWCCY	1 cut(s)	241
Psp5II	RGGWCCY	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	330, 417
PspPI	GGNCC	2 cut(s)	241, 416
PspPPI	RGGWCCY	1 cut(s)	241
PsuI	RGATCY	3 cut(s)	328, 388, 454
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	3 cut(s)	6, 202, 270
Sau3AI	GATC	6 cut(s)	246, 291, 328, 388, 435, 454
Sau96I	GGNCC	2 cut(s)	241, 416
ScrFI	CCNGG	2 cut(s)	256, 344
SfaNI	GCATC	1 cut(s)	415
SfuI	TTCGAA	1 cut(s)	302
SinI	GGWCC	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	2 cut(s)	298, 365
SsiI	CCGC	5 cut(s)	80, 269, 272, 378, 401
SspMI	CTAG	2 cut(s)	9, 429
StyD4I	CCNGG	2 cut(s)	254, 342
StyI	CCWWGG	2 cut(s)	129, 324
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	5 cut(s)	156, 207, 302, 423, 438
TasI	AATT	2 cut(s)	298, 365
TatI	WGTACW	1 cut(s)	55
TauI	GCSGC	1 cut(s)	272
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseFI	GTSAC	2 cut(s)	82, 221
TseI	GCWGC	2 cut(s)	5, 201
Tsp45I	GTSAC	2 cut(s)	82, 221
VpaK11BI	GGWCC	1 cut(s)	241
XagI	CCTNNNNNAGG	2 cut(s)	209, 248
XapI	RAATTY	1 cut(s)	298
XceI	RCATGY	1 cut(s)	323
XspI	CTAG	2 cut(s)	9, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.