Rmu_co8436939.1_g000001

Acts in the modification of cell walls via demethylesterification of cell wall pectin

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8436939.1
Physical Location & Seq
Forward (+)
1 .. 1474
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8436939.1_g000001.1.cds

Sequence Viewer

Length: 1373 bp
atccgaggagcaaccaggcccttcagaactgcaaagaactcttagagttctccatcaatgatctgaagaagtcggtcgaccagatcggccccttcgaagttagcaagctcaaagcatatgtcgacgaccttaaggtttggcttagtgcctccatcagctacgaacagacttgcttggatggattcgtggactccaagggtgaggctgggaccaaaatgcagggcttcttaaagcaatcacaagaactcaccaagaacggacttgccatggtcactgaaataggcaacctcttggtaaatggcaaccttaaaacccaacgtcgtctcttagctgaggttgaggctccaatagaccaaaagaaggcaaataagatcatcccctcatggattgatggacgcaagctcgacctcgctaccgccaatccgagctcccttaaacccgacgttgtagtcgctgcggatggaagtgaaaattacaagaccatcaacgaggctctccaggatatgcccaagaacggtggtgaaaaaacatttgtgatctacatcaaagagggaacgtatgatgagaatgtgttggttgacaagcatatgaccaatgtcatgttcatcggtgatggccctaccaagaccaagatcacgggtaacaagaactatgccgatggtgtccaaacatacaaaaccgcaactgtcgctgtgatcggagactacttcattgctaaggacataggattcgagaacacagccggacctaaaggacaccaagccgtggcactgcgtgttcaatctgatctgtccatcttctacaactgccagatagacggttaccaaaacactctcttcacccaaacacacaggcaattctaccgagactgcaccatctctggaaccatcgacttcatcttcggtgatgcagtcgccgtgttccaaaactgcaagttgatcatcaagaagcccgactcagatcaggactgctttgtcacctcccaaggaaggagtgacaagcggcagcctactgccatcgccctccaaaattgcaccattagcggcgagaaggactatgtgaacaacaaaggtgcctacttgggcaggccacaacacgcctactctaggaccgtcgtgatgcagtccgagatcgatgacgttatcagccctgagggttggatggagtggactggtaagaccaaccacgaaacatgctggttcggcgagttctcaaacaggggacgtggtgcggccaccaacaagagggtgaattggtacaagttggtcacccgtgaacaagccgccgaattcacccccggcggaattctttctggtgataggtggatcaagcccagcggtgtgccgtatgaggctggaatgatgcgtgtctaa

Protein Analysis

456

Amino Acids

50.68

Weight (kDa)

6.66

Isoelectric Point (pI)

28.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 448, 973
AccB1I GGYRCC 1 cut(s) 1072
AccB7I CCANNNNNTGG 1 cut(s) 765
AccI GTMKAC 2 cut(s) 77, 122
AciI CCGC 9 cut(s) 416, 457, 680, 1002, 1043, 1231, 1283, 1301, 1337
AclWI GGATC 1 cut(s) 1333
AcoI YGGCCR 1 cut(s) 1232
AcsI RAATTY 2 cut(s) 1288, 1304
AcuI CTGAAG 2 cut(s) 7, 85
AdeI CACNNNGTG 1 cut(s) 775
AfaI GTAC 1 cut(s) 1258
AfiI CCNNNNNNNGG 6 cut(s) 360, 514, 765, 989, 1106, 1244
AflII CTTAAG 1 cut(s) 130
AgsI TTSAA 1 cut(s) 781
AjiI CACGTC 1 cut(s) 1225
AjnI CCWGG 2 cut(s) 14, 497
AjuI GAANNNNNNNTTGG 2 cut(s) 586, 618
AluBI AGCT 5 cut(s) 108, 158, 331, 402, 428
AluI AGCT 5 cut(s) 108, 158, 331, 402, 428
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 3 cut(s) 328, 695, 860
AlwI GGATC 1 cut(s) 1333
AoxI GGCC 5 cut(s) 17, 87, 615, 1087, 1232
ApeKI GCWGC 2 cut(s) 454, 1005
ApoI RAATTY 2 cut(s) 1288, 1304
ArsI GACNNNNNNTTYG 6 cut(s) 104, 136, 712, 744, 883, 915
Asp700I GAANNNNTTC 1 cut(s) 1308
AspS9I GGNCC 6 cut(s) 18, 88, 209, 616, 745, 1109
AsuC2I CCSGG 1 cut(s) 1298
AsuII TTCGAA 1 cut(s) 95
AvaII GGWCC 3 cut(s) 209, 745, 1109
AxyI CCTNAGG 1 cut(s) 1151
BanI GGYRCC 1 cut(s) 1072
BanII GRGCYC 1 cut(s) 430
Bbv12I GWGCWC 1 cut(s) 430
BbvCI CCTCAGC 1 cut(s) 332
BbvI GCAGC 2 cut(s) 441, 1017
BceAI ACGGC 3 cut(s) 748, 901, 1329
BciT130I CCWGG 2 cut(s) 16, 499
BclI TGATCA 1 cut(s) 938
BcnI CCSGG 1 cut(s) 1298
BcoDI GTCTC 3 cut(s) 328, 695, 860
BfaI CTAG 1 cut(s) 1106
BfrI CTTAAG 1 cut(s) 130
BisI GCNGC 6 cut(s) 455, 1003, 1006, 1044, 1232, 1283
BlsI GCNGC 6 cut(s) 456, 1004, 1007, 1045, 1233, 1284
Bme1390I CCNGG 3 cut(s) 16, 499, 1298
Bme18I GGWCC 3 cut(s) 209, 745, 1109
BmgBI CACGTC 1 cut(s) 1225
BmgT120I GGNCC 6 cut(s) 18, 88, 209, 616, 745, 1109
BmiI GGNNCC 5 cut(s) 90, 210, 344, 885, 1074
BmrFI CCNGG 3 cut(s) 16, 499, 1298
BmsI GCATC 3 cut(s) 897, 1109, 1352
BoxI GACNNNNGTC 1 cut(s) 595
BpmI CTGGAG 1 cut(s) 481
Bpu10I CCTNAGC 2 cut(s) 332, 716
Bpu14I TTCGAA 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 1298
Bsa29I ATCGAT 1 cut(s) 1133
BsaBI GATNNNNATC 1 cut(s) 541
BsaJI CCNNGG 6 cut(s) 4, 194, 266, 764, 984, 1296
Bsc4I CCNNNNNNNGG 6 cut(s) 360, 514, 765, 989, 1106, 1244
Bse1I ACTGG 1 cut(s) 1176
Bse21I CCTNAGG 1 cut(s) 1151
Bse3DI GCAATG 1 cut(s) 710
Bse8I GATNNNNATC 1 cut(s) 541
BseBI CCWGG 2 cut(s) 16, 499
BseCI ATCGAT 1 cut(s) 1133
BseDI CCNNGG 6 cut(s) 4, 194, 266, 764, 984, 1296
BseGI GGATG 4 cut(s) 183, 374, 465, 1166
BseJI GATNNNNATC 1 cut(s) 541
BseLI CCNNNNNNNGG 6 cut(s) 360, 514, 765, 989, 1106, 1244
BseMI GCAATG 1 cut(s) 710
BseMII CTCAG 3 cut(s) 323, 971, 1142
BseNI ACTGG 1 cut(s) 1176
BseRI GAGGAG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 441, 1017
BseYI CCCAGC 2 cut(s) 205, 1333
BsgI GTGCAG 1 cut(s) 855
Bsh1285I CGRYCG 1 cut(s) 77
BshFI GGCC 5 cut(s) 19, 89, 617, 1089, 1234
BshNI GGYRCC 1 cut(s) 1072
BshVI ATCGAT 1 cut(s) 1133
BsiEI CGRYCG 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 430
BsiSI CCGG 2 cut(s) 743, 1298
BslFI GGGAC 2 cut(s) 222, 1235
BslI CCNNNNNNNGG 6 cut(s) 360, 514, 765, 989, 1106, 1244
BsmAI GTCTC 3 cut(s) 328, 695, 860
BsmBI CGTCTC 1 cut(s) 328
BsmFI GGGAC 2 cut(s) 222, 1235
BsnI GGCC 5 cut(s) 19, 89, 617, 1089, 1234
Bsp119I TTCGAA 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 430
Bsp19I CCATGG 1 cut(s) 266
BspACI CCGC 9 cut(s) 416, 457, 680, 1002, 1043, 1231, 1283, 1301, 1337
BspANI GGCC 5 cut(s) 19, 89, 617, 1089, 1234
BspCNI CTCAG 3 cut(s) 324, 970, 1143
BspDI ATCGAT 1 cut(s) 1133
BspLI GGNNCC 5 cut(s) 90, 210, 344, 885, 1074
BspPI GGATC 1 cut(s) 1333
BspT104I TTCGAA 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 1072
BspTI CTTAAG 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 710
BsrI ACTGG 1 cut(s) 1176
BssECI CCNNGG 6 cut(s) 4, 194, 266, 764, 984, 1296
BssT1I CCWWGG 3 cut(s) 194, 266, 984
Bst2UI CCWGG 2 cut(s) 16, 499
Bst4CI ACNGT 4 cut(s) 517, 687, 820, 1113
Bst6I CTCTTC 1 cut(s) 841
BstAFI CTTAAG 1 cut(s) 130
BstBI TTCGAA 1 cut(s) 95
BstC8I GCNNGC 3 cut(s) 106, 400, 1087
BstDEI CTNAG 7 cut(s) 42, 142, 327, 332, 716, 957, 1151
BstDSI CCRYGG 2 cut(s) 266, 764
BstEII GGTNACC 2 cut(s) 820, 1266
BstENI CCTNNNNNAGG 1 cut(s) 1104
BstF5I GGATG 4 cut(s) 183, 374, 465, 1166
BstMAI GTCTC 3 cut(s) 328, 695, 860
BstMCI CGRYCG 1 cut(s) 77
BstMWI GCNNNNNNNGC 3 cut(s) 688, 1040, 1202
BstNI CCWGG 2 cut(s) 16, 499
BstNSI RCATGY 1 cut(s) 1196
BstPAI GACNNNNGTC 1 cut(s) 595
BstPI GGTNACC 2 cut(s) 820, 1266
BstSCI CCNGG 3 cut(s) 14, 497, 1296
BstV1I GCAGC 2 cut(s) 441, 1017
Bsu15I ATCGAT 1 cut(s) 1133
Bsu36I CCTNAGG 1 cut(s) 1151
BsuRI GGCC 5 cut(s) 19, 89, 617, 1089, 1234
BsuTUI ATCGAT 1 cut(s) 1133
BtgI CCRYGG 2 cut(s) 266, 764
BtgZI GCGATG 1 cut(s) 1002
BtrI CACGTC 1 cut(s) 1225
BtsCI GGATG 4 cut(s) 183, 374, 465, 1166
BtsI GCAGTG 1 cut(s) 769
BtsIMutI CAGTG 2 cut(s) 272, 769
Cac8I GCNNGC 3 cut(s) 106, 400, 1087
Cfr13I GGNCC 6 cut(s) 18, 88, 209, 616, 745, 1109
ClaI ATCGAT 1 cut(s) 1133
CseI GACGC 1 cut(s) 404
Csp6I GTAC 1 cut(s) 1257
CspCI CAANNNNNGTGG 2 cut(s) 498, 533
CviAII CATG 4 cut(s) 267, 383, 600, 1193
CviQI GTAC 1 cut(s) 1257
DdeI CTNAG 7 cut(s) 42, 142, 327, 332, 716, 957, 1151
DraIII CACNNNGTG 1 cut(s) 775
DrdI GACNNNNNNGTC 2 cut(s) 448, 973
DseDI GACNNNNNNGTC 2 cut(s) 448, 973
EaeI YGGCCR 1 cut(s) 1232
Eam1104I CTCTTC 1 cut(s) 841
EarI CTCTTC 1 cut(s) 841
EciI GGCGGA 1 cut(s) 1316
Ecl136II GAGCTC 1 cut(s) 428
Eco130I CCWWGG 3 cut(s) 194, 266, 984
Eco24I GRGCYC 1 cut(s) 430
Eco47I GGWCC 3 cut(s) 209, 745, 1109
Eco53kI GAGCTC 1 cut(s) 428
Eco57I CTGAAG 2 cut(s) 7, 85
Eco81I CCTNAGG 1 cut(s) 1151
Eco91I GGTNACC 2 cut(s) 820, 1266
EcoICRI GAGCTC 1 cut(s) 428
EcoNI CCTNNNNNAGG 1 cut(s) 1104
EcoO109I RGGNCCY 1 cut(s) 18
EcoO65I GGTNACC 2 cut(s) 820, 1266
EcoRI GAATTC 2 cut(s) 1288, 1304
EcoRII CCWGG 2 cut(s) 14, 497
EcoT14I CCWWGG 3 cut(s) 194, 266, 984
EcoT38I GRGCYC 1 cut(s) 430
ErhI CCWWGG 3 cut(s) 194, 266, 984
Esp3I CGTCTC 1 cut(s) 328
FaeI CATG 4 cut(s) 270, 386, 603, 1196
FaqI GGGAC 2 cut(s) 222, 1235
FatI CATG 4 cut(s) 266, 382, 599, 1192
FauNDI CATATG 2 cut(s) 117, 587
FbaI TGATCA 1 cut(s) 938
FblI GTMKAC 2 cut(s) 77, 122
Fnu4HI GCNGC 6 cut(s) 455, 1003, 1006, 1044, 1232, 1283
FokI GGATG 4 cut(s) 190, 361, 472, 1173
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 6 cut(s) 455, 1003, 1006, 1044, 1232, 1283
FspBI CTAG 1 cut(s) 1106
GluI GCNGC 6 cut(s) 455, 1003, 1006, 1044, 1232, 1283
GsaI CCCAGC 2 cut(s) 209, 1337
GsuI CTGGAG 1 cut(s) 481
HaeIII GGCC 5 cut(s) 19, 89, 617, 1089, 1234
HapII CCGG 2 cut(s) 743, 1298
HgaI GACGC 1 cut(s) 404
Hin1II CATG 4 cut(s) 270, 386, 603, 1196
HincII GTYRAC 3 cut(s) 78, 123, 579
HindII GTYRAC 3 cut(s) 78, 123, 579
HinfI GANTC 4 cut(s) 182, 190, 728, 955
HpaII CCGG 2 cut(s) 743, 1298
Hpy166II GTNNAC 7 cut(s) 78, 123, 189, 579, 1062, 1169, 1276
Hpy188I TCNGA 8 cut(s) 5, 26, 65, 425, 700, 786, 960, 1128
Hpy188III TCNNGA 5 cut(s) 732, 881, 945, 964, 1116
Hpy8I GTNNAC 7 cut(s) 78, 123, 189, 579, 1062, 1169, 1276
Hpy99I CGWCG 4 cut(s) 127, 323, 445, 1117
HpyAV CCTTC 5 cut(s) 31, 102, 354, 983, 1044
HpyCH4III ACNGT 4 cut(s) 517, 687, 820, 1113
HpyCH4IV ACGT 5 cut(s) 318, 443, 556, 1139, 1224
HpyCH4V TGCA 7 cut(s) 32, 219, 872, 910, 932, 1034, 1122
HpyF10VI GCNNNNNNNGC 3 cut(s) 688, 1040, 1202
HpyF3I CTNAG 7 cut(s) 42, 142, 327, 332, 716, 957, 1151
HpySE526I ACGT 5 cut(s) 318, 443, 556, 1139, 1224
Hsp92II CATG 4 cut(s) 270, 386, 603, 1196
Ksp22I TGATCA 1 cut(s) 938
LmnI GCTCC 3 cut(s) 8, 348, 433
Lsp1109I GCAGC 2 cut(s) 441, 1017
LweI GCATC 3 cut(s) 897, 1109, 1352
MaeI CTAG 1 cut(s) 1106
MaeII ACGT 5 cut(s) 318, 443, 556, 1139, 1224
MaeIII GTNAC 6 cut(s) 270, 640, 820, 975, 994, 1266
MboII GAAGA 4 cut(s) 78, 789, 828, 891
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 6 cut(s) 471, 856, 1029, 1251, 1288, 1304
MlyI GAGTC 2 cut(s) 184, 949
MmeI TCCRAC 1 cut(s) 1138
MroXI GAANNNNTTC 1 cut(s) 1308
MseI TTAA 4 cut(s) 131, 229, 308, 434
MspA1I CMGCKG 1 cut(s) 1337
MspCI CTTAAG 1 cut(s) 130
MspI CCGG 2 cut(s) 743, 1298
MspR9I CCNGG 3 cut(s) 16, 499, 1298
MvaI CCWGG 2 cut(s) 16, 499
MwoI GCNNNNNNNGC 3 cut(s) 688, 1040, 1202
NciI CCSGG 1 cut(s) 1298
NcoI CCATGG 1 cut(s) 266
NdeI CATATG 2 cut(s) 117, 587
NlaIII CATG 4 cut(s) 270, 386, 603, 1196
NlaIV GGNNCC 5 cut(s) 90, 210, 344, 885, 1074
NmuCI GTSAC 4 cut(s) 270, 975, 994, 1266
NspI RCATGY 1 cut(s) 1196
NspV TTCGAA 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 1308
PfeI GAWTC 2 cut(s) 182, 728
PflMI CCANNNNNTGG 1 cut(s) 765
PfoI TCCNGGA 1 cut(s) 497
PkrI GCNGC 6 cut(s) 456, 1004, 1007, 1045, 1233, 1284
PleI GAGTC 2 cut(s) 184, 949
PpsI GAGTC 2 cut(s) 184, 949
PshAI GACNNNNGTC 1 cut(s) 595
Psp124BI GAGCTC 1 cut(s) 430
Psp6I CCWGG 2 cut(s) 14, 497
PspEI GGTNACC 2 cut(s) 820, 1266
PspFI CCCAGC 2 cut(s) 205, 1333
PspGI CCWGG 2 cut(s) 14, 497
PspN4I GGNNCC 5 cut(s) 90, 210, 344, 885, 1074
PspPI GGNCC 6 cut(s) 18, 88, 209, 616, 745, 1109
RsaI GTAC 1 cut(s) 1258
RsaNI GTAC 1 cut(s) 1257
SacI GAGCTC 1 cut(s) 430
SalI GTCGAC 2 cut(s) 76, 121
SaqAI TTAA 4 cut(s) 131, 229, 308, 434
SatI GCNGC 6 cut(s) 455, 1003, 1006, 1044, 1232, 1283
Sau96I GGNCC 6 cut(s) 18, 88, 209, 616, 745, 1109
SchI GAGTC 2 cut(s) 184, 949
ScrFI CCNGG 3 cut(s) 16, 499, 1298
SduI GDGCHC 1 cut(s) 430
SfaNI GCATC 3 cut(s) 897, 1109, 1352
SfuI TTCGAA 1 cut(s) 95
SinI GGWCC 3 cut(s) 209, 745, 1109
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
Sse9I AATT 6 cut(s) 471, 856, 1029, 1251, 1288, 1304
SsiI CCGC 9 cut(s) 416, 457, 680, 1002, 1043, 1231, 1283, 1301, 1337
SspMI CTAG 1 cut(s) 1106
SstI GAGCTC 1 cut(s) 430
StyD4I CCNGG 3 cut(s) 14, 497, 1296
StyI CCWWGG 3 cut(s) 194, 266, 984
TaaI ACNGT 4 cut(s) 517, 687, 820, 1113
TaiI ACGT 5 cut(s) 321, 446, 559, 1142, 1227
TaqI TCGA 7 cut(s) 77, 95, 122, 404, 731, 890, 1133
TaqII GACCGA 1 cut(s) 63
TasI AATT 6 cut(s) 471, 856, 1029, 1251, 1288, 1304
TauI GCSGC 4 cut(s) 1005, 1046, 1234, 1285
TfiI GAWTC 2 cut(s) 182, 728
Tru1I TTAA 4 cut(s) 131, 229, 308, 434
Tru9I TTAA 4 cut(s) 131, 229, 308, 434
TscAI CASTG 2 cut(s) 279, 776
TseFI GTSAC 4 cut(s) 270, 975, 994, 1266
TseI GCWGC 2 cut(s) 454, 1005
Tsp45I GTSAC 4 cut(s) 270, 975, 994, 1266
TspDTI ATGAA 3 cut(s) 594, 699, 885
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 2 cut(s) 279, 776
Van91I CCANNNNNTGG 1 cut(s) 765
Vha464I CTTAAG 1 cut(s) 130
VpaK11BI GGWCC 3 cut(s) 209, 745, 1109
XagI CCTNNNNNAGG 1 cut(s) 1104
XapI RAATTY 2 cut(s) 1288, 1304
XceI RCATGY 1 cut(s) 1196
XmiI GTMKAC 2 cut(s) 77, 122
XmnI GAANNNNTTC 1 cut(s) 1308
XspI CTAG 1 cut(s) 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.