Rh3CG074300

Acts in the modification of cell walls via demethylesterification of cell wall pectin

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
5850366 .. 5851296
931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG074300.1

Sequence Viewer

Length: 798 bp
ATGACCAATCTGATGCTGATCGGAGACGGTGCTAATAAGACCAGAATCACCGGAAACTTGAACTTCGTAGACGGCACCCCTACCTACAAAACCGCTACAGTTGCGGTCCATGGAGCTCACTTCATGGCTAGGGATATTGGGTTTGAGAACTCAGCCGGTCCAGACAAACATCAAGCTGTGGCAATTAGGGTGAGTGCCGATGAGGCAATCTTCTATAGGTGTGCATTTGATGGCTACCAAGACACACTTTACACACATGTCCAACGCCAATTCTACCGCGACTGCACAATCTCCGGTACCATTGACTTTGTTTTCGGTGATGCTGCCGCCATTTTCCAAAACTGCACTTTTGTGGTGCGCAAGCCAATGCCGAACCAGTCTTGCATTGTCACAGCTCAAGGCCGGAAAGAGAGGCGCCAGCCAACTGGAATCATCATTATAAACAGCAGATTTACCTCTGATGCCGCATACTACCCTCTGAGGCATGAAAACAAGGCATATCTTGGCCGTCCATGGAAGGAGTACTCGAGGACCATCATCATGGAGTCATACATTGATGACTTCATTCGGCCACAAGGTTGGTTACCGTGGGAGGCCGATTTCGGGCTCAAGACATGCTTCTATGCTGAGTACAACAATCGTGGCCCTGGTGCTAGCAAGGCGAAGCGTGTGACATGGCACTGCATCAAGAACATTACGCCGCAGCATGCTTTGGATTTCACACCCGGCAGGTTCTTTAAGGGTGATCGATGGGTTAGGCTATCTGGAGTGCCTTATTTTCCTGGCCTCACTGCTTGA

Protein Analysis

265

Amino Acids

30.08

Weight (kDa)

9.19

Isoelectric Point (pI)

30.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 1 - 249 1.4e-118 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 440
Acc16I TGCGCA 1 cut(s) 359
Acc36I ACCTGC 1 cut(s) 720
Acc65I GGTACC 1 cut(s) 296
AccB1I GGYRCC 3 cut(s) 74, 296, 414
AccI GTMKAC 1 cut(s) 69
AccII CGCG 1 cut(s) 279
AciI CCGC 6 cut(s) 93, 104, 277, 327, 465, 701
AcoI YGGCCR 2 cut(s) 505, 569
AcyI GRCGYC 1 cut(s) 415
AfaI GTAC 3 cut(s) 298, 524, 632
AfiI CCNNNNNNNGG 1 cut(s) 603
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 1 cut(s) 61
AjnI CCWGG 2 cut(s) 646, 781
AleI CACNNNNGTG 1 cut(s) 350
AluBI AGCT 3 cut(s) 116, 176, 395
AluI AGCT 3 cut(s) 116, 176, 395
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 526
AoxI GGCC 6 cut(s) 400, 505, 569, 594, 643, 784
ApeKI GCWGC 2 cut(s) 323, 703
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
Asp718I GGTACC 1 cut(s) 296
AspLEI GCGC 2 cut(s) 360, 417
AspS9I GGNCC 4 cut(s) 106, 158, 531, 644
AsuC2I CCSGG 1 cut(s) 726
AsuHPI GGTGA 4 cut(s) 40, 202, 329, 755
AsuNHI GCTAGC 1 cut(s) 653
AvaI CYCGRG 1 cut(s) 526
AvaII GGWCC 3 cut(s) 106, 158, 531
BanI GGYRCC 3 cut(s) 74, 296, 414
BanII GRGCYC 2 cut(s) 118, 609
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 2 cut(s) 310, 715
BccI CCATC 3 cut(s) 224, 542, 744
BceAI ACGGC 2 cut(s) 88, 492
BciT130I CCWGG 2 cut(s) 648, 783
BcnI CCSGG 1 cut(s) 726
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 2 cut(s) 129, 654
BfmI CTRYAG 2 cut(s) 96, 214
BfoI RGCGCY 1 cut(s) 418
BfuAI ACCTGC 1 cut(s) 720
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 5 cut(s) 324, 327, 465, 701, 704
BlsI GCNGC 5 cut(s) 325, 328, 466, 702, 705
BmcAI AGTACT 1 cut(s) 524
Bme1390I CCNGG 3 cut(s) 648, 726, 783
Bme18I GGWCC 3 cut(s) 106, 158, 531
BmeT110I CYCGRG 1 cut(s) 526
BmgT120I GGNCC 4 cut(s) 106, 158, 531, 644
BmiI GGNNCC 3 cut(s) 76, 298, 416
BmrFI CCNGG 3 cut(s) 648, 726, 783
BmsI GCATC 4 cut(s) 3, 310, 451, 693
BmtI GCTAGC 1 cut(s) 657
BpmI CTGGAG 1 cut(s) 786
BpuEI CTTGAG 2 cut(s) 381, 593
BpuMI CCSGG 1 cut(s) 726
Bsa29I ATCGAT 1 cut(s) 748
BsaBI GATNNNNATC 1 cut(s) 17
BsaHI GRCGYC 1 cut(s) 415
BsaJI CCNNGG 4 cut(s) 109, 512, 587, 646
BsaWI WCCGGW 2 cut(s) 50, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 603
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 2 cut(s) 376, 430
Bse8I GATNNNNATC 1 cut(s) 17
BseBI CCWGG 2 cut(s) 648, 783
BseCI ATCGAT 1 cut(s) 748
BseDI CCNNGG 4 cut(s) 109, 512, 587, 646
BseJI GATNNNNATC 1 cut(s) 17
BseLI CCNNNNNNNGG 1 cut(s) 603
BseMII CTCAG 3 cut(s) 165, 470, 618
BseNI ACTGG 2 cut(s) 376, 430
BseXI GCAGC 2 cut(s) 310, 715
BsgI GTGCAG 2 cut(s) 268, 328
Bsh1236I CGCG 1 cut(s) 279
BshFI GGCC 6 cut(s) 402, 507, 571, 596, 645, 786
BshNI GGYRCC 3 cut(s) 74, 296, 414
BshVI ATCGAT 1 cut(s) 748
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 526
BsiSI CCGG 5 cut(s) 51, 156, 294, 403, 726
BslI CCNNNNNNNGG 1 cut(s) 603
BsmAI GTCTC 1 cut(s) 18
BsmBI CGTCTC 1 cut(s) 18
BsnI GGCC 6 cut(s) 402, 507, 571, 596, 645, 786
BsoBI CYCGRG 1 cut(s) 526
Bsp1286I GDGCHC 2 cut(s) 118, 609
Bsp143I GATC 2 cut(s) 18, 745
Bsp19I CCATGG 2 cut(s) 109, 512
BspACI CCGC 6 cut(s) 93, 104, 277, 327, 465, 701
BspANI GGCC 6 cut(s) 402, 507, 571, 596, 645, 786
BspCNI CTCAG 3 cut(s) 164, 471, 619
BspDI ATCGAT 1 cut(s) 748
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 3 cut(s) 76, 298, 416
BspMI ACCTGC 1 cut(s) 720
BspOI GCTAGC 1 cut(s) 657
BspT107I GGYRCC 3 cut(s) 74, 296, 414
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 2 cut(s) 376, 430
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 4 cut(s) 109, 512, 587, 646
BssMI GATC 2 cut(s) 18, 745
BssNI GRCGYC 1 cut(s) 415
BssT1I CCWWGG 2 cut(s) 109, 512
Bst2UI CCWGG 2 cut(s) 648, 783
Bst4CI ACNGT 3 cut(s) 29, 100, 588
BstACI GRCGYC 1 cut(s) 415
BstC8I GCNNGC 4 cut(s) 362, 419, 655, 708
BstDEI CTNAG 3 cut(s) 151, 479, 627
BstDSI CCRYGG 3 cut(s) 109, 512, 587
BstEII GGTNACC 1 cut(s) 582
BstFNI CGCG 1 cut(s) 279
BstH2I RGCGCY 1 cut(s) 418
BstHHI GCGC 2 cut(s) 360, 417
BstKTI GATC 2 cut(s) 21, 748
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 2 cut(s) 18, 745
BstMWI GCNNNNNNNGC 3 cut(s) 101, 203, 659
BstNI CCWGG 2 cut(s) 648, 783
BstNSI RCATGY 3 cut(s) 260, 618, 710
BstPI GGTNACC 1 cut(s) 582
BstSCI CCNGG 3 cut(s) 646, 724, 781
BstSFI CTRYAG 2 cut(s) 96, 214
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 310, 715
BstXI CCANNNNNNTGG 3 cut(s) 425, 541, 579
Bsu15I ATCGAT 1 cut(s) 748
BsuRI GGCC 6 cut(s) 402, 507, 571, 596, 645, 786
BsuTUI ATCGAT 1 cut(s) 748
BtgI CCRYGG 3 cut(s) 109, 512, 587
BtsI GCAGTG 2 cut(s) 679, 789
BtsIMutI CAGTG 2 cut(s) 679, 789
BveI ACCTGC 1 cut(s) 720
Cac8I GCNNGC 4 cut(s) 362, 419, 655, 708
CfoI GCGC 2 cut(s) 360, 417
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 4 cut(s) 106, 158, 531, 644
ClaI ATCGAT 1 cut(s) 748
Csp6I GTAC 3 cut(s) 297, 523, 631
CspCI CAANNNNNGTGG 2 cut(s) 622, 657
CviAII CATG 9 cut(s) 110, 124, 257, 485, 513, 541, 615, 675, 707
CviQI GTAC 3 cut(s) 297, 523, 631
DdeI CTNAG 3 cut(s) 151, 479, 627
DinI GGCGCC 1 cut(s) 416
DpnI GATC 2 cut(s) 20, 747
DpnII GATC 2 cut(s) 18, 745
EaeI YGGCCR 2 cut(s) 505, 569
Ecl136II GAGCTC 1 cut(s) 116
Eco130I CCWWGG 2 cut(s) 109, 512
Eco24I GRGCYC 2 cut(s) 118, 609
Eco47I GGWCC 3 cut(s) 106, 158, 531
Eco53kI GAGCTC 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 526
Eco91I GGTNACC 1 cut(s) 582
EcoICRI GAGCTC 1 cut(s) 116
EcoO65I GGTNACC 1 cut(s) 582
EcoRII CCWGG 2 cut(s) 646, 781
EcoT14I CCWWGG 2 cut(s) 109, 512
EcoT38I GRGCYC 2 cut(s) 118, 609
EgeI GGCGCC 1 cut(s) 416
EheI GGCGCC 1 cut(s) 416
ErhI CCWWGG 2 cut(s) 109, 512
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 9 cut(s) 113, 127, 260, 488, 516, 544, 618, 678, 710
FalI AAGNNNNNCTT 4 cut(s) 231, 263, 602, 634
FatI CATG 9 cut(s) 109, 123, 256, 484, 512, 540, 614, 674, 706
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 5 cut(s) 324, 327, 465, 701, 704
FriOI GRGCYC 2 cut(s) 118, 609
Fsp4HI GCNGC 5 cut(s) 324, 327, 465, 701, 704
FspBI CTAG 2 cut(s) 129, 654
FspI TGCGCA 1 cut(s) 359
GlaI GCGC 2 cut(s) 359, 416
GluI GCNGC 5 cut(s) 324, 327, 465, 701, 704
GsuI CTGGAG 1 cut(s) 786
HaeII RGCGCY 1 cut(s) 418
HaeIII GGCC 6 cut(s) 402, 507, 571, 596, 645, 786
HapII CCGG 5 cut(s) 51, 156, 294, 403, 726
HhaI GCGC 2 cut(s) 360, 417
Hin1I GRCGYC 1 cut(s) 415
Hin1II CATG 9 cut(s) 113, 127, 260, 488, 516, 544, 618, 678, 710
Hin6I GCGC 2 cut(s) 358, 415
HinP1I GCGC 2 cut(s) 358, 415
HinfI GANTC 3 cut(s) 45, 429, 545
HpaII CCGG 5 cut(s) 51, 156, 294, 403, 726
HphI GGTGA 4 cut(s) 40, 202, 329, 755
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 4 cut(s) 12, 23, 460, 480
Hpy188III TCNNGA 4 cut(s) 161, 610, 688, 765
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 511
HpyCH4III ACNGT 3 cut(s) 29, 100, 588
HpyCH4V TGCA 5 cut(s) 224, 285, 345, 384, 684
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 203, 659
HpyF3I CTNAG 3 cut(s) 151, 479, 627
Hsp92I GRCGYC 1 cut(s) 415
Hsp92II CATG 9 cut(s) 113, 127, 260, 488, 516, 544, 618, 678, 710
HspAI GCGC 2 cut(s) 358, 415
KasI GGCGCC 1 cut(s) 414
KpnI GGTACC 1 cut(s) 300
Kzo9I GATC 2 cut(s) 18, 745
LmnI GCTCC 1 cut(s) 113
Lsp1109I GCAGC 2 cut(s) 310, 715
LweI GCATC 4 cut(s) 3, 310, 451, 693
MaeI CTAG 2 cut(s) 129, 654
MaeIII GTNAC 3 cut(s) 388, 582, 670
MalI GATC 2 cut(s) 20, 747
MboI GATC 2 cut(s) 18, 745
MboII GAAGA 1 cut(s) 202
MhlI GDGCHC 2 cut(s) 118, 609
MluCI AATT 2 cut(s) 183, 269
Mly113I GGCGCC 1 cut(s) 415
MlyI GAGTC 1 cut(s) 554
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 8 cut(s) 196, 405, 466, 474, 486, 522, 586, 797
MseI TTAA 1 cut(s) 738
MslI CAYNNNNRTG 2 cut(s) 350, 539
MspI CCGG 5 cut(s) 51, 156, 294, 403, 726
MspR9I CCNGG 3 cut(s) 648, 726, 783
MvaI CCWGG 2 cut(s) 648, 783
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 3 cut(s) 101, 203, 659
NarI GGCGCC 1 cut(s) 415
NciI CCSGG 1 cut(s) 726
NcoI CCATGG 2 cut(s) 109, 512
NdeII GATC 2 cut(s) 18, 745
NheI GCTAGC 1 cut(s) 653
NlaIII CATG 9 cut(s) 113, 127, 260, 488, 516, 544, 618, 678, 710
NlaIV GGNNCC 3 cut(s) 76, 298, 416
NmuCI GTSAC 2 cut(s) 388, 670
NsbI TGCGCA 1 cut(s) 359
NspI RCATGY 3 cut(s) 260, 618, 710
OliI CACNNNNGTG 1 cut(s) 350
PaeI GCATGC 1 cut(s) 710
PaeR7I CTCGAG 1 cut(s) 526
PciI ACATGT 1 cut(s) 256
PfeI GAWTC 2 cut(s) 45, 429
PkrI GCNGC 5 cut(s) 325, 328, 466, 702, 705
PleI GAGTC 1 cut(s) 553
PluTI GGCGCC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 553
PscI ACATGT 1 cut(s) 256
PsiI TTATAA 1 cut(s) 440
Psp124BI GAGCTC 1 cut(s) 118
Psp6I CCWGG 2 cut(s) 646, 781
PspEI GGTNACC 1 cut(s) 582
PspGI CCWGG 2 cut(s) 646, 781
PspN4I GGNNCC 3 cut(s) 76, 298, 416
PspPI GGNCC 4 cut(s) 106, 158, 531, 644
PspXI VCTCGAGB 1 cut(s) 526
RsaI GTAC 3 cut(s) 298, 524, 632
RsaNI GTAC 3 cut(s) 297, 523, 631
RseI CAYNNNNRTG 2 cut(s) 350, 539
SacI GAGCTC 1 cut(s) 118
SaqAI TTAA 1 cut(s) 738
SatI GCNGC 5 cut(s) 324, 327, 465, 701, 704
Sau3AI GATC 2 cut(s) 18, 745
Sau96I GGNCC 4 cut(s) 106, 158, 531, 644
ScaI AGTACT 1 cut(s) 524
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 3 cut(s) 648, 726, 783
SduI GDGCHC 2 cut(s) 118, 609
SetI ASST 8 cut(s) 86, 118, 178, 221, 397, 458, 580, 734
SfaNI GCATC 4 cut(s) 3, 310, 451, 693
SfcI CTRYAG 2 cut(s) 96, 214
SfoI GGCGCC 1 cut(s) 416
Sfr274I CTCGAG 1 cut(s) 526
SinI GGWCC 3 cut(s) 106, 158, 531
SlaI CTCGAG 1 cut(s) 526
SmiMI CAYNNNNRTG 2 cut(s) 350, 539
SmlI CTYRAG 3 cut(s) 396, 526, 608
SmoI CTYRAG 3 cut(s) 396, 526, 608
SphI GCATGC 1 cut(s) 710
Sse9I AATT 2 cut(s) 183, 269
SsiI CCGC 6 cut(s) 93, 104, 277, 327, 465, 701
SspDI GGCGCC 1 cut(s) 414
SspMI CTAG 2 cut(s) 129, 654
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 3 cut(s) 646, 724, 781
StyI CCWWGG 2 cut(s) 109, 512
TaaI ACNGT 3 cut(s) 29, 100, 588
TaqI TCGA 2 cut(s) 527, 748
TasI AATT 2 cut(s) 183, 269
TatI WGTACW 2 cut(s) 522, 630
TauI GCSGC 3 cut(s) 329, 467, 703
TfiI GAWTC 2 cut(s) 45, 429
Tru1I TTAA 1 cut(s) 738
Tru9I TTAA 1 cut(s) 738
TscAI CASTG 2 cut(s) 686, 796
TseFI GTSAC 2 cut(s) 388, 670
TseI GCWGC 2 cut(s) 323, 703
Tsp45I GTSAC 2 cut(s) 388, 670
TspDTI ATGAA 3 cut(s) 112, 501, 553
TspRI CASTG 2 cut(s) 686, 796
VpaK11BI GGWCC 3 cut(s) 106, 158, 531
XceI RCATGY 3 cut(s) 260, 618, 710
XhoI CTCGAG 1 cut(s) 526
XmiI GTMKAC 1 cut(s) 69
XspI CTAG 2 cut(s) 129, 654
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.