Rorug04G0187000

Acts in the modification of cell walls via demethylesterification of cell wall pectin

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
32461481 .. 32472231
10751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0187000.1

Sequence Viewer

Length: 5145 bp
ATGGTGATGTCTACGCCAACTGTACATGTGAGAGATACCATTGAACTTGACGAAACTGAAGAGAAGATATTCGAGAGGCTGCTTGGAACGCTTGACCATTATGGACTTAAGACTGAGCTTCGTGTCGCAGAATGCAAGGACATTGACATTGCTTTGGAAGATATGATGGGCAGCAAATTTGTTGAGAAGGTGAGAGACTACTTGTTGTCTGTGGGGGAAGAGGTTCAAGGAATCGCTATCATTCCAAGTAATCCCGATCAATCAAAACATTTGGAAACGGCGAGGATGCGCATCTTAAATGTATGGGTTGATTTTGTGAACTTACGTTGTGAAGAGTACAGTGATGATAGCCGCATTCCCACTATGGTTCCTGTCGTGAATTATATTTTCAGAGACTCCCTTAAACAAAGAGTCAGCGATGCTGAAACTGTTATTAATTTACACAATGCATTGGAGAAGTTTTTGTCTTTGCTTCCTCACTTTGTACCAAATGGGGATGTAAAACTCGCCGAAGTTGATTTGGGAAGAGAATATGTTGATGTGCCTCTTACATCGAAAGAATCAAAACTCCGAGTGTTAACAGGGTTTCTTTTACAAGAAATTAAAGATTTTTGGCGAGTTGCTTTGCTGATGTCTACACTTTTATATCCCACCAACGTCTTAGACAAGAATCTCAAACCAGAAGATCGCAGAGCATTGTTTGTAGAAGCTGAAAAGGCCATAAATAATCTAGGTCTAGATAAAGTGTGGGATGTAAAGCCATTACTTAATGGAAAGGAGATCATGGATGCTTTGCAGCTTAAATCTGGAGGACCGCTTGTCAGTAAATGGCTTTCAATGGTGATCATTCAAGAAGCCTCTTCTTCTTCTTCTTCTTCTTCCACCCATCCATGGAAATACCATGTCTTTTTGAGTTTTAGAGGTGAGGATACCCGCAATAATTTCACAGGCCATTTGTGCAGCGCTTTGCGTCAGAAGGGAATCAACACCTTCATGGATGATCAGCTCAGAAGAGGAGAAGAAATATCAACAGCACTTCTCCAAGCAATTGAACAGTCGAGGATTTCAATCATTGTGTTCTCTAAAAACTATGCATCGTCCAGGTGGTGCTTGGATGAACTTGTCAAGATCCTCGACTGCAGGAGAACAAATCAACAAGAGGTTCGACCAGTTTTCTACAAAGTCGATCCCTCGGATATACGAAATCACAGAGGTAGCTTTGGGGAGGCACTTGCTAATCATGAATGCAAATTCAAAGATAACCCGGACAAGGTCCGGAAATGGAAGAGTGCTCTCTCTGAAGCAGCAAATTTGTCAGGGTGGCCTCTCTTGGATGAGCATTGCTCTGAATCCAATGTTATTAATCAAATCGTTGAAGAAATCTCAGTGAAAGTGATAGAACGTACATATTTGGAGGTAACCAAGTACCCAGTTGGAATAGAGTCTCGTGTGCAAAATGTTCATAGGCTTTTAGGTGTTGAGGGAAAAGATGTTCATATGGTAGGGATATGGGGAACTGGTGGAATTGGTAAGACAACAATTGCAAAAGCTGTCTATAACTCGATTGCTCATGAGTTTGATGGGAGTTGTTTTTTGGAAAATGTTAGAGAAAATTCAATGCATGACAGAGGCTTCATCAAATTACAAAAAACACTTCTTTTTGAGATTCTAGGGGGAACAAAATTGAAGGTGGCCAATGTAGCTAGAGGAATCAATATGATCAAGGATAGGTTGCAGTACAAAAGGGTTCTTTTGGTTCTTGATGATGTGAATGACATGGATCAGTTAAACAAGTTAGCCGGTGACCCTAGTTGGTTTGGTATGGGTAGTAAAATCATCATAACGACAAGGGATAAGGAATTGCTGACAGGTCATAATGTTAATTTAATATACGAGGTCAAAGAATTGGCTCATCATGAAGCTCTCGAGCTTTTTAGTCGAAATGCCTTCAAAGGAAACAGACCTTTGGATGGTTTTGAGGAACTTACAGAACGTGCTATACGCTATGCTCAAGGCCTTCCATTAGCTTTGAGTGTTCTAGGATCTTCTCTATGTGGTGGAAGTGTAGAAAAATGGAAAGCTGCATTAGAGGGTTTCAAAAGCCCAACAATTAGAAAAGTTCTCCAAATAAGTTACGAAGGACTGGATGACACTGTGAAAGAAATTTTTCTCGACATTGCATGTTTCTTCAAAGGTGAATATACAGACCACGTGATACAGGCACTAGAAGCTTCTCGCCGCAAACCTGCTAAGTATGGTATCAACGTGCTCATAGACAAGGCCCTCATCAATACATCTACGGGTCACATTTGGATGCATGACTTGCTAGAAGAACTGGGTAGAGATATAGTTCACAAAGAGTCGCCCAATGACCCTGGAAAGCGTAGCAGGTTGTGGTTTCATGAAGATGTTTACCGTGTTCTAACAGAGAATACTGGAACAACCAATGTTATAGGCATCAAGGTGAAGCTGCCCAAAGATTCAGATGTGATATGTTTAAGTGGGACCACTTTCTCCAACATGCGAAATCTTAGACTTTTCATACACTGTGCTGGACGCTGTTCTGGCGCTGTTGATAGTCTGCCAAATAGCTTGAGGGTAGTTGATTGGCCTGAATATCCCTTACAATTTTTGCCATCCAATTTAATTCAAAGAGAACTTGCTGTAATCAATATGCCTAGGAGTCGCATCACAGTATTGGGAGATGGATACAAGCATCTGGTAAATCTGACATCAATAAATCTAAGTTGTTGTCAGTACCTAACGAAAGTGTCAGACTTATCGGGAAGCCCAAACTTACGACGTTTGAATCTAGATTACTGTAAAAGTTTAGTTGAAGTGCATTCTTCCGTTGGATTCCTCGATAAACTTGAGTATTTGAGTCTTTCGGACTGCTCTAGGCTTGAGACTTTTCTCACAGAAGTTAATTGGAAATCCATGAGGACACTTATGCTTCCCTCTTGTCGAAGGCTTGAAAATTTCATAAAAATTGGGCACAACATGGAGTCCATTAAAACATTGGATCTAATGGAAAGTGGCATAAAAGAATTGCAGTCATGGATTGGATGTTGCATTTCCTTGGAAGTTTTGAACTTGCATGGAACTTCAATCAAACAACTGCCTTCTTCAGAGATTGAAAATCTTACTTCTTTAAGAGAATTGGACCTGTGGGGAACTCCCCTTGAGGAATTGCCTTCATCGATTGGGTATTGCACTTCCTTGGAGATATTGAACGCGTATGGAACTGACATTGAAGAATTGCCTTCATCGATTGGGTATTGCACTTCTTTATGTGAATTGAATCTGTCTGGGACTCTCATCGAAGAATTGCCTTCTTCAATTGGGAATCTCACGTCCTTGGTGGAATTGAACGTTTCTAAAACTCCCTTCAAAGAACTGCCTTCTTCAATTGGGAATCTCACGTCCTTGGTGGAATTGAACGTTTCTAAAACTCCCATCAAAGAACTGCCTTCTTCAATTGGGAATCTCACTTCCTTGAGGATATTGGACGCTTCTAAAACTCTGATTGAAGAACTGCCTTCTTCAATTGGGAATCTCACTTCCTTGACGATATTGGACGCTTCTAAAACTCCCATCAAAGAACTGCCTCTATCAATTGGGGATCTCACGTCCTTGGTGAAATTGAACGTTTCTAAAACTTCCATCAGAGAACTGCCTTCTTCAATTGGGAATCTCACGTCCTTGGAGGTATTGGACGCTTCTGAAACTCTGATTGAAGAATTGCCTCTGTCAATTGGAAATCTCATTCGCCTTGGAGAATTGAAACTAAAAGGATGTGCAAACCTTACAAATGTGCCGCACGGTGTTTACGGAGGGCTGCAAGATCTAGACCTCTCTTGGTGCCCAAAACTGGTGACATTTCCAAGCAGGGCAGGGGCGAGCGCTTTGGTTTCATCAAGTGCAGAATCTCTTCCTTTGATGCTTCCATCTAATTCAAACAATGGGCATGATCATCCTGGTTCATTATTGTTTCCCCGGCTACGGCATCTTGAATTTGAAGGATGCCAATTATCAGTGGTCTCTGATTTCCTAACGAATCTTGACTGTGAGTCCACATTACGGAGCCTTAATCTATCAGGAAGCAGTTTTGATAGTCTTCCGGCATGCATCAGCAAATTTCGCGAATTGCAGTCTCTTAATTTGAGTGGTTGCAAGAGGCTTCGAGACATTTCAGAACTTCCACCAAATCTACGAGAAATAAAGCTGGATGATTGCGTATCGTTGGAAAGATTTTCAAAATTGTCAAATATACTGGAACAGAAAGACACTCCGGGACGTCTTCGCGAGATCCACTTGTCTAATTGCAATAGACTGATGGATAATCTTGGCATGGACGTGGTGTCGAAGATGGCAAAAGCATTACCGTATCAGCTGGTGCGTGCCGGCTTAGATCGGCATCTGATGTGCTGGAATCTTATTCTTCCAAGCCTCCAGGAAATTGAAGTTCCAAATTGGTTTGATGGGGGTGAGGTGGACACAAGTGTGCTTCCTGGTCATGGAACTCAGGGTATATGTGAAATTTTGATAAAAATCCCCAGGAATCTGAAGGCTGAGAGAATAGGATTGGTTGTCTGTCTTGTTTTTGAACTTACCCAAGATTTTTCCAGTGGCTTGTCTAAGATGAGTCAAGCAATCTCCCAAGATAATAGTTGTTCTGTGCGGGTTGTGATTGATAAAAAAGTGTGTCATGGCTCTACTTGGCAATTTTTTATATCAAAAGCGACAGAGTCATCAGCTCAAGATCATGTATTAGTGCATCTGACATGTATTGCTTTCAAGGAGCTAGAGGTGTTGGATCCTGTGGTTCGAGTGTCTTATGCGCCTTTGCACCCTGCCAGAGGGTCGCTCCTAAAAAGTTTCGGGGTCCACCTGGCTAATATGAAAGAGGATCATGTAAGTGGTGAAGACCTGGCACGAGAAAGATATAGGCAGAGCAATGCTAGCATTTCTGATCAGGTGGCTTTGCACACAGAAGGGGCAGCTGTAGCATCATTAGTATCAGATGACAGCAATTACGGGGAAGTACACGATGATCATCACAATGGGGAACAAGAACGAGAACGAGAACAGGAACCTCATCGTCCAACAAAAAGATTGAAGACATGGCAAGACAAAAAAATATAG

Protein Analysis

1714

Amino Acids

191.71

Weight (kDa)

5.84

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 299 - 465 2.8e-53 TIR domain
TIR_2 PF13676 302 - 397 2.8e-16 TIR domain
NB-ARC PF00931 484 - 652 2.7e-19 NB-ARC domain
WHD_ROQ1 PF23282 720 - 788 5.8e-15 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 1044 - 1124 9.3e-14 Leucine-rich repeat region
LRR_14 PF23598 1100 - 1171 1.4e-14 Leucine-rich repeat region
LRR_14 PF23598 1159 - 1219 1.2e-12 Leucine-rich repeat region
LRR_14 PF23598 1215 - 1281 1.4e-09 Leucine-rich repeat region
LRR_13 PF23286 1331 - 1429 3.7e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 4300
Acc16I TGCGCA 1 cut(s) 290
Acc36I ACCTGC 2 cut(s) 2254, 2379
AccB1I GGYRCC 1 cut(s) 3861
AccI GTMKAC 2 cut(s) 11, 635
AccII CGCG 3 cut(s) 3236, 4143, 4305
AccIII TCCGGA 1 cut(s) 1275
AciI CCGC 6 cut(s) 352, 815, 934, 2239, 3818, 4681
AclI AACGTT 3 cut(s) 3372, 3441, 3648
AcoI YGGCCR 1 cut(s) 1692
AcsI RAATTY 9 cut(s) 176, 1250, 1309, 1612, 2163, 2977, 4013, 4136, 4539
AcuI CTGAAG 4 cut(s) 78, 1320, 3111, 4586
AcvI CACGTG 1 cut(s) 2212
AcyI GRCGYC 1 cut(s) 4297
AfaI GTAC 8 cut(s) 24, 338, 486, 1405, 1427, 1739, 2759, 5046
AfeI AGCGCT 2 cut(s) 964, 3904
AfiI CCNNNNNNNGG 8 cut(s) 891, 1270, 1970, 3871, 4002, 4080, 4517, 4859
AflII CTTAAG 1 cut(s) 107
AflIII ACRYGT 3 cut(s) 25, 3234, 4784
AhdI GACNNNNNGTC 3 cut(s) 818, 4069, 4360
AjiI CACGTC 5 cut(s) 3354, 3423, 3630, 3699, 4357
AjnI CCWGG 8 cut(s) 1100, 2374, 3976, 4452, 4510, 4556, 4890, 4929
AleI CACNNNNGTG 1 cut(s) 4502
AloI GAACNNNNNNTCC 2 cut(s) 1476, 1508
Alw21I GWGCWC 2 cut(s) 1294, 2271
Alw26I GTCTC 7 cut(s) 189, 387, 1449, 2900, 4045, 4158, 4179
Ama87I CYCGRG 1 cut(s) 1925
Aor13HI TCCGGA 1 cut(s) 1275
Aor51HI AGCGCT 2 cut(s) 964, 3904
AoxI GGCC 7 cut(s) 717, 949, 1322, 1692, 2014, 2280, 2609
ApeKI GCWGC 9 cut(s) 79, 171, 796, 960, 1304, 2081, 2470, 3838, 5000
ApoI RAATTY 9 cut(s) 176, 1250, 1309, 1612, 2163, 2977, 4013, 4136, 4539
AseI ATTAAT 2 cut(s) 435, 1362
Asp700I GAANNNNTTC 4 cut(s) 68, 222, 2166, 3930
AspA2I CCTAGG 1 cut(s) 2678
AspLEI GCGC 5 cut(s) 291, 965, 2570, 3905, 4843
AspS9I GGNCC 6 cut(s) 812, 1273, 2281, 2505, 3163, 4885
AsuC2I CCSGG 3 cut(s) 1265, 3997, 4293
AsuNHI GCTAGC 1 cut(s) 4961
AvaI CYCGRG 1 cut(s) 1925
AvaII GGWCC 5 cut(s) 812, 1273, 2505, 3163, 4885
AvrII CCTAGG 1 cut(s) 2678
BaeGI GKGCMC 2 cut(s) 2997, 3866
BalI TGGCCA 1 cut(s) 1694
BamHI GGATCC 1 cut(s) 4816
BanI GGYRCC 1 cut(s) 3861
BauI CACGAG 2 cut(s) 1446, 4935
BbrPI CACGTG 1 cut(s) 2212
BbsI GAAGAC 4 cut(s) 4109, 4292, 4932, 5126
Bbv12I GWGCWC 2 cut(s) 1294, 2271
BbvI GCAGC 9 cut(s) 66, 183, 808, 972, 1316, 2068, 2457, 3825, 5012
BceAI ACGGC 2 cut(s) 294, 4019
BciT130I CCWGG 8 cut(s) 1102, 2376, 3978, 4454, 4512, 4558, 4892, 4931
BciVI GTATCC 2 cut(s) 922, 2702
BclI TGATCA 6 cut(s) 843, 1000, 1719, 3970, 4972, 5053
BcnI CCSGG 3 cut(s) 1265, 3997, 4293
BcoDI GTCTC 7 cut(s) 189, 387, 1449, 2900, 4045, 4158, 4179
BfmI CTRYAG 2 cut(s) 1138, 5004
BfoI RGCGCY 3 cut(s) 966, 2571, 3906
BfrI CTTAAG 1 cut(s) 107
BfuAI ACCTGC 2 cut(s) 2254, 2379
BfuI GTATCC 2 cut(s) 922, 2702
BglII AGATCT 1 cut(s) 3844
BlnI CCTAGG 1 cut(s) 2678
Bme18I GGWCC 5 cut(s) 812, 1273, 2505, 3163, 4885
BmeRI GACNNNNNGTC 3 cut(s) 818, 4069, 4360
BmeT110I CYCGRG 1 cut(s) 1925
BmgBI CACGTC 5 cut(s) 3354, 3423, 3630, 3699, 4357
BmgT120I GGNCC 6 cut(s) 812, 1273, 2281, 2505, 3163, 4885
BmiI GGNNCC 7 cut(s) 369, 2506, 3863, 4085, 4818, 4886, 5094
BmrI ACTGGG 2 cut(s) 1424, 2345
BmtI GCTAGC 1 cut(s) 4965
BmuI ACTGGG 2 cut(s) 1424, 2345
BpiI GAAGAC 4 cut(s) 4109, 4292, 4932, 5126
BplI GAGNNNNNCTC 4 cut(s) 1328, 1360, 4851, 4883
BpmI CTGGAG 2 cut(s) 828, 4436
BpuEI CTTGAG 7 cut(s) 1995, 2614, 2891, 2924, 3203, 3517, 4743
BpuMI CCSGG 3 cut(s) 1265, 3997, 4293
Bsa29I ATCGAT 2 cut(s) 3200, 3269
BsaAI YACGTR 1 cut(s) 2212
BsaBI GATNNNNATC 5 cut(s) 290, 1067, 4416, 4550, 5055
BsaHI GRCGYC 1 cut(s) 4297
BsaI GGTCTC 1 cut(s) 4045
BsaWI WCCGGW 1 cut(s) 1275
Bsc4I CCNNNNNNNGG 8 cut(s) 891, 1270, 1970, 3871, 4002, 4080, 4517, 4859
Bse118I RCCGGY 2 cut(s) 1799, 4403
Bse1I ACTGG 9 cut(s) 1169, 1430, 1522, 2148, 2340, 2440, 3876, 4278, 4626
Bse3DI GCAATG 4 cut(s) 147, 1339, 2175, 4963
Bse8I GATNNNNATC 5 cut(s) 290, 1067, 4416, 4550, 5055
BseAI TCCGGA 1 cut(s) 1275
BseBI CCWGG 8 cut(s) 1102, 2376, 3978, 4454, 4512, 4558, 4892, 4931
BseCI ATCGAT 2 cut(s) 3200, 3269
BseJI GATNNNNATC 5 cut(s) 290, 1067, 4416, 4550, 5055
BseLI CCNNNNNNNGG 8 cut(s) 891, 1270, 1970, 3871, 4002, 4080, 4517, 4859
BseMI GCAATG 4 cut(s) 147, 1339, 2175, 4963
BseMII CTCAG 5 cut(s) 105, 1021, 1398, 4538, 4563
BseNI ACTGG 9 cut(s) 1169, 1430, 1522, 2148, 2340, 2440, 3876, 4278, 4626
BseRI GAGGAG 1 cut(s) 1029
BseSI GKGCMC 2 cut(s) 2997, 3866
BseXI GCAGC 9 cut(s) 66, 183, 808, 972, 1316, 2068, 2457, 3825, 5012
BsgI GTGCAG 2 cut(s) 979, 3942
Bsh1236I CGCG 3 cut(s) 3236, 4143, 4305
BshFI GGCC 7 cut(s) 719, 951, 1324, 1694, 2016, 2282, 2611
BshNI GGYRCC 1 cut(s) 3861
BshVI ATCGAT 2 cut(s) 3200, 3269
BsiHKAI GWGCWC 2 cut(s) 1294, 2271
BsiHKCI CYCGRG 1 cut(s) 1925
BsiSI CCGG 7 cut(s) 1265, 1276, 1800, 3997, 4121, 4292, 4404
BslFI GGGAC 3 cut(s) 2518, 3325, 4308
BslI CCNNNNNNNGG 8 cut(s) 891, 1270, 1970, 3871, 4002, 4080, 4517, 4859
BsmAI GTCTC 7 cut(s) 189, 387, 1449, 2900, 4045, 4158, 4179
BsmFI GGGAC 3 cut(s) 2518, 3325, 4308
BsmI GAATGC 4 cut(s) 137, 354, 1250, 2842
BsnI GGCC 7 cut(s) 719, 951, 1324, 1694, 2016, 2282, 2611
Bso31I GGTCTC 1 cut(s) 4045
BsoBI CYCGRG 1 cut(s) 1925
Bsp1286I GDGCHC 4 cut(s) 1294, 2271, 2997, 3866
Bsp13I TCCGGA 1 cut(s) 1275
Bsp1407I TGTACA 1 cut(s) 22
Bsp19I CCATGG 1 cut(s) 890
Bsp68I TCGCGA 2 cut(s) 4143, 4305
BspACI CCGC 6 cut(s) 352, 815, 934, 2239, 3818, 4681
BspANI GGCC 7 cut(s) 719, 951, 1324, 1694, 2016, 2282, 2611
BspCNI CTCAG 5 cut(s) 106, 1020, 1397, 4537, 4564
BspDI ATCGAT 2 cut(s) 3200, 3269
BspEI TCCGGA 1 cut(s) 1275
BspFNI CGCG 3 cut(s) 3236, 4143, 4305
BspHI TCATGA 4 cut(s) 1240, 1570, 1915, 2401
BspLI GGNNCC 7 cut(s) 369, 2506, 3863, 4085, 4818, 4886, 5094
BspMAI CTGCAG 1 cut(s) 1142
BspMI ACCTGC 2 cut(s) 2254, 2379
BspOI GCTAGC 1 cut(s) 4965
BspT107I GGYRCC 1 cut(s) 3861
BspTI CTTAAG 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 4045
BsrDI GCAATG 4 cut(s) 147, 1339, 2175, 4963
BsrFI RCCGGY 2 cut(s) 1799, 4403
BsrGI TGTACA 1 cut(s) 22
BsrI ACTGG 9 cut(s) 1169, 1430, 1522, 2148, 2340, 2440, 3876, 4278, 4626
BssAI RCCGGY 2 cut(s) 1799, 4403
BssNI GRCGYC 1 cut(s) 4297
BssSI CACGAG 2 cut(s) 1446, 4935
BssT1I CCWWGG 9 cut(s) 890, 2678, 3078, 3219, 3357, 3426, 3633, 3702, 3772
Bst2BI CACGAG 2 cut(s) 1446, 4935
Bst2UI CCWGG 8 cut(s) 1102, 2376, 3978, 4454, 4512, 4558, 4892, 4931
Bst6I CTCTTC 8 cut(s) 54, 213, 327, 520, 865, 1006, 1280, 3936
BstACI GRCGYC 1 cut(s) 4297
BstAFI CTTAAG 1 cut(s) 107
BstAPI GCANNNNNTGC 1 cut(s) 2323
BstAUI TGTACA 1 cut(s) 22
BstBAI YACGTR 1 cut(s) 2212
BstC8I GCNNGC 5 cut(s) 3901, 4126, 4401, 4405, 4963
BstDSI CCRYGG 1 cut(s) 890
BstEII GGTNACC 2 cut(s) 1417, 1802
BstENI CCTNNNNNAGG 1 cut(s) 4857
BstFNI CGCG 3 cut(s) 3236, 4143, 4305
BstH2I RGCGCY 3 cut(s) 966, 2571, 3906
BstHHI GCGC 5 cut(s) 291, 965, 2570, 3905, 4843
BstMAI GTCTC 7 cut(s) 189, 387, 1449, 2900, 4045, 4158, 4179
BstNI CCWGG 8 cut(s) 1102, 2376, 3978, 4454, 4512, 4558, 4892, 4931
BstNSI RCATGY 5 cut(s) 29, 2184, 2524, 4128, 4788
BstPI GGTNACC 2 cut(s) 1417, 1802
BstSFI CTRYAG 2 cut(s) 1138, 5004
BstSLI GKGCMC 2 cut(s) 2997, 3866
BstUI CGCG 3 cut(s) 3236, 4143, 4305
BstV1I GCAGC 9 cut(s) 66, 183, 808, 972, 1316, 2068, 2457, 3825, 5012
BstV2I GAAGAC 4 cut(s) 4109, 4292, 4932, 5126
BstX2I RGATCY 7 cut(s) 1128, 2042, 3022, 3622, 3844, 4308, 4816
BstYI RGATCY 7 cut(s) 1128, 2042, 3022, 3622, 3844, 4308, 4816
Bsu15I ATCGAT 2 cut(s) 3200, 3269
BsuI GTATCC 2 cut(s) 922, 2702
BsuRI GGCC 7 cut(s) 719, 951, 1324, 1694, 2016, 2282, 2611
BsuTUI ATCGAT 2 cut(s) 3200, 3269
BtgI CCRYGG 1 cut(s) 890
BtgZI GCGATG 1 cut(s) 432
BtrI CACGTC 5 cut(s) 3354, 3423, 3630, 3699, 4357
BtsIMutI CAGTG 6 cut(s) 346, 1392, 2151, 2545, 4041, 4633
BtuMI TCGCGA 2 cut(s) 4143, 4305
BveI ACCTGC 2 cut(s) 2254, 2379
Cac8I GCNNGC 5 cut(s) 3901, 4126, 4401, 4405, 4963
CciI TCATGA 4 cut(s) 1240, 1570, 1915, 2401
CfoI GCGC 5 cut(s) 291, 965, 2570, 3905, 4843
Cfr10I RCCGGY 2 cut(s) 1799, 4403
Cfr13I GGNCC 6 cut(s) 812, 1273, 2281, 2505, 3163, 4885
ClaI ATCGAT 2 cut(s) 3200, 3269
CseI GACGC 5 cut(s) 959, 2565, 3518, 3587, 3725
Csp6I GTAC 8 cut(s) 23, 337, 485, 1404, 1426, 1738, 2758, 5045
CviQI GTAC 8 cut(s) 23, 337, 485, 1404, 1426, 1738, 2758, 5045
DriI GACNNNNNGTC 3 cut(s) 818, 4069, 4360
EaeI YGGCCR 1 cut(s) 1692
Eam1104I CTCTTC 8 cut(s) 54, 213, 327, 520, 865, 1006, 1280, 3936
Eam1105I GACNNNNNGTC 3 cut(s) 818, 4069, 4360
EarI CTCTTC 8 cut(s) 54, 213, 327, 520, 865, 1006, 1280, 3936
Eco130I CCWWGG 9 cut(s) 890, 2678, 3078, 3219, 3357, 3426, 3633, 3702, 3772
Eco147I AGGCCT 1 cut(s) 2016
Eco31I GGTCTC 1 cut(s) 4045
Eco47I GGWCC 5 cut(s) 812, 1273, 2505, 3163, 4885
Eco47III AGCGCT 2 cut(s) 964, 3904
Eco57I CTGAAG 4 cut(s) 78, 1320, 3111, 4586
Eco72I CACGTG 1 cut(s) 2212
Eco88I CYCGRG 1 cut(s) 1925
Eco91I GGTNACC 2 cut(s) 1417, 1802
EcoNI CCTNNNNNAGG 1 cut(s) 4857
EcoO109I RGGNCCY 1 cut(s) 2281
EcoO65I GGTNACC 2 cut(s) 1417, 1802
EcoRII CCWGG 8 cut(s) 1100, 2374, 3976, 4452, 4510, 4556, 4890, 4929
EcoT14I CCWWGG 9 cut(s) 890, 2678, 3078, 3219, 3357, 3426, 3633, 3702, 3772
EcoT22I ATGCAT 5 cut(s) 451, 1096, 1623, 2319, 4130
ErhI CCWWGG 9 cut(s) 890, 2678, 3078, 3219, 3357, 3426, 3633, 3702, 3772
FaqI GGGAC 3 cut(s) 2518, 3325, 4308
FauI CCCGC 2 cut(s) 941, 4674
FauNDI CATATG 1 cut(s) 1497
FbaI TGATCA 6 cut(s) 843, 1000, 1719, 3970, 4972, 5053
FblI GTMKAC 2 cut(s) 11, 635
FspAI RTGCGCAY 1 cut(s) 290
FspI TGCGCA 1 cut(s) 290
GlaI GCGC 5 cut(s) 290, 964, 2569, 3904, 4842
GsuI CTGGAG 2 cut(s) 828, 4436
HaeII RGCGCY 3 cut(s) 966, 2571, 3906
HaeIII GGCC 7 cut(s) 719, 951, 1324, 1694, 2016, 2282, 2611
HapII CCGG 7 cut(s) 1265, 1276, 1800, 3997, 4121, 4292, 4404
HgaI GACGC 5 cut(s) 959, 2565, 3518, 3587, 3725
HhaI GCGC 5 cut(s) 291, 965, 2570, 3905, 4843
Hin1I GRCGYC 1 cut(s) 4297
Hin6I GCGC 5 cut(s) 289, 963, 2568, 3903, 4841
HinP1I GCGC 5 cut(s) 289, 963, 2568, 3903, 4841
HincII GTYRAC 1 cut(s) 579
HindII GTYRAC 1 cut(s) 579
HindIII AAGCTT 1 cut(s) 2229
HpaI GTTAAC 1 cut(s) 579
HpaII CCGG 7 cut(s) 1265, 1276, 1800, 3997, 4121, 4292, 4404
Hpy99I CGWCG 1 cut(s) 2805
Hsp92I GRCGYC 1 cut(s) 4297
HspAI GCGC 5 cut(s) 289, 963, 2568, 3903, 4841
Kpn2I TCCGGA 1 cut(s) 1275
KroI GCCGGC 1 cut(s) 4403
KroNI GCCGGC 1 cut(s) 4405
Ksp22I TGATCA 6 cut(s) 843, 1000, 1719, 3970, 4972, 5053
KspAI GTTAAC 1 cut(s) 579
LmnI GCTCC 3 cut(s) 4083, 4801, 4872
Lsp1109I GCAGC 9 cut(s) 66, 183, 808, 972, 1316, 2068, 2457, 3825, 5012
MaeIII GTNAC 5 cut(s) 1417, 1802, 2132, 2303, 3874
MfeI CAATTG 9 cut(s) 1047, 1539, 3339, 3408, 3477, 3546, 3615, 3684, 3753
MflI RGATCY 7 cut(s) 1128, 2042, 3022, 3622, 3844, 4308, 4816
MhlI GDGCHC 4 cut(s) 1294, 2271, 2997, 3866
MlsI TGGCCA 1 cut(s) 1694
MluI ACGCGT 1 cut(s) 3234
MluNI TGGCCA 1 cut(s) 1694
MmeI TCCRAC 6 cut(s) 1414, 2541, 2833, 4224, 4794, 5129
Mox20I TGGCCA 1 cut(s) 1694
Mph1103I ATGCAT 5 cut(s) 451, 1096, 1623, 2319, 4130
MroI TCCGGA 1 cut(s) 1275
MroNI GCCGGC 1 cut(s) 4403
MroXI GAANNNNTTC 4 cut(s) 68, 222, 2166, 3930
MscI TGGCCA 1 cut(s) 1694
MslI CAYNNNNRTG 8 cut(s) 992, 2312, 2406, 2462, 4355, 4502, 4917, 5061
Msp20I TGGCCA 1 cut(s) 1694
MspA1I CMGCKG 2 cut(s) 4393, 5003
MspCI CTTAAG 1 cut(s) 107
MspI CCGG 7 cut(s) 1265, 1276, 1800, 3997, 4121, 4292, 4404
MunI CAATTG 9 cut(s) 1047, 1539, 3339, 3408, 3477, 3546, 3615, 3684, 3753
Mva1269I GAATGC 4 cut(s) 137, 354, 1250, 2842
MvaI CCWGG 8 cut(s) 1102, 2376, 3978, 4454, 4512, 4558, 4892, 4931
MvnI CGCG 3 cut(s) 3236, 4143, 4305
NaeI GCCGGC 1 cut(s) 4405
NciI CCSGG 3 cut(s) 1265, 3997, 4293
NcoI CCATGG 1 cut(s) 890
NdeI CATATG 1 cut(s) 1497
NgoMIV GCCGGC 1 cut(s) 4403
NheI GCTAGC 1 cut(s) 4961
NlaIV GGNNCC 7 cut(s) 369, 2506, 3863, 4085, 4818, 4886, 5094
NmuCI GTSAC 3 cut(s) 1802, 2303, 3874
NruI TCGCGA 2 cut(s) 4143, 4305
NsbI TGCGCA 1 cut(s) 290
NsiI ATGCAT 5 cut(s) 451, 1096, 1623, 2319, 4130
NspI RCATGY 5 cut(s) 29, 2184, 2524, 4128, 4788
OliI CACNNNNGTG 1 cut(s) 4502
PaeI GCATGC 1 cut(s) 4128
PaeR7I CTCGAG 1 cut(s) 1925
PagI TCATGA 4 cut(s) 1240, 1570, 1915, 2401
PceI AGGCCT 1 cut(s) 2016
PciI ACATGT 2 cut(s) 25, 4784
PctI GAATGC 4 cut(s) 137, 354, 1250, 2842
PdiI GCCGGC 1 cut(s) 4405
PdmI GAANNNNTTC 4 cut(s) 68, 222, 2166, 3930
PflFI GACNNNGTC 2 cut(s) 1271, 4747
PfoI TCCNGGA 2 cut(s) 4291, 4452
PmaCI CACGTG 1 cut(s) 2212
PmlI CACGTG 1 cut(s) 2212
Ppu21I YACGTR 1 cut(s) 2212
PscI ACATGT 2 cut(s) 25, 4784
PshBI ATTAAT 2 cut(s) 435, 1362
Psp1406I AACGTT 3 cut(s) 3372, 3441, 3648
Psp6I CCWGG 8 cut(s) 1100, 2374, 3976, 4452, 4510, 4556, 4890, 4929
PspCI CACGTG 1 cut(s) 2212
PspEI GGTNACC 2 cut(s) 1417, 1802
PspGI CCWGG 8 cut(s) 1100, 2374, 3976, 4452, 4510, 4556, 4890, 4929
PspN4I GGNNCC 7 cut(s) 369, 2506, 3863, 4085, 4818, 4886, 5094
PspPI GGNCC 6 cut(s) 812, 1273, 2281, 2505, 3163, 4885
PsrI GAACNNNNNNTAC 2 cut(s) 1983, 2015
PstI CTGCAG 1 cut(s) 1142
PsuI RGATCY 7 cut(s) 1128, 2042, 3022, 3622, 3844, 4308, 4816
PsyI GACNNNGTC 2 cut(s) 1271, 4747
PvuII CAGCTG 2 cut(s) 4393, 5003
RruI TCGCGA 2 cut(s) 4143, 4305
RsaI GTAC 8 cut(s) 24, 338, 486, 1405, 1427, 1739, 2759, 5046
RsaNI GTAC 8 cut(s) 23, 337, 485, 1404, 1426, 1738, 2758, 5045
RseI CAYNNNNRTG 8 cut(s) 992, 2312, 2406, 2462, 4355, 4502, 4917, 5061
Sau96I GGNCC 6 cut(s) 812, 1273, 2281, 2505, 3163, 4885
SduI GDGCHC 4 cut(s) 1294, 2271, 2997, 3866
SfcI CTRYAG 2 cut(s) 1138, 5004
Sfr274I CTCGAG 1 cut(s) 1925
SinI GGWCC 5 cut(s) 812, 1273, 2505, 3163, 4885
SlaI CTCGAG 1 cut(s) 1925
SmiMI CAYNNNNRTG 8 cut(s) 992, 2312, 2406, 2462, 4355, 4502, 4917, 5061
SmlI CTYRAG 9 cut(s) 107, 1925, 2010, 2593, 2870, 2903, 3182, 3496, 4758
SmoI CTYRAG 9 cut(s) 107, 1925, 2010, 2593, 2870, 2903, 3182, 3496, 4758
SphI GCATGC 1 cut(s) 4128
SseBI AGGCCT 1 cut(s) 2016
SsiI CCGC 6 cut(s) 352, 815, 934, 2239, 3818, 4681
StuI AGGCCT 1 cut(s) 2016
StyI CCWWGG 9 cut(s) 890, 2678, 3078, 3219, 3357, 3426, 3633, 3702, 3772
TatI WGTACW 4 cut(s) 22, 336, 1737, 5044
TauI GCSGC 3 cut(s) 354, 2241, 3820
TscAI CASTG 6 cut(s) 346, 1392, 2158, 2552, 4041, 4633
TseFI GTSAC 3 cut(s) 1802, 2303, 3874
TseI GCWGC 9 cut(s) 79, 171, 796, 960, 1304, 2081, 2470, 3838, 5000
Tsp45I GTSAC 3 cut(s) 1802, 2303, 3874
TspGWI ACGGA 3 cut(s) 2839, 3846, 4096
TspRI CASTG 6 cut(s) 346, 1392, 2158, 2552, 4041, 4633
Tth111I GACNNNGTC 2 cut(s) 1271, 4747
Vha464I CTTAAG 1 cut(s) 107
VpaK11BI GGWCC 5 cut(s) 812, 1273, 2505, 3163, 4885
VspI ATTAAT 2 cut(s) 435, 1362
XagI CCTNNNNNAGG 1 cut(s) 4857
XapI RAATTY 9 cut(s) 176, 1250, 1309, 1612, 2163, 2977, 4013, 4136, 4539
XbaI TCTAGA 3 cut(s) 736, 2812, 3847
XceI RCATGY 5 cut(s) 29, 2184, 2524, 4128, 4788
XcmI CCANNNNNNNNNTGG 2 cut(s) 1108, 3016
XhoI CTCGAG 1 cut(s) 1925
XmaJI CCTAGG 1 cut(s) 2678
XmiI GTMKAC 2 cut(s) 11, 635
XmnI GAANNNNTTC 4 cut(s) 68, 222, 2166, 3930
ZraI GACGTC 1 cut(s) 4298
Zsp2I ATGCAT 5 cut(s) 451, 1096, 1623, 2319, 4130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.