Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000809

Physical Location & Seq

Genomic Coordinates Reverse (-)

32481722 .. 32502525

Gene Structure 20804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0187200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTTTAGAGCTCTAGCATGCTTGCATAAACAGGGTGTGGTGCACAGAGATATTAAGCCCGGAAACTTCCTCTTCTCTCAGAAGCTAAGCAAAGGTTACCTGATTGATTTCAACCATGGTATAGGTAGTCTACTGGTCTTCGCTAAATTGCAAGACCAGGTGAGTGTTCTTGGAACTTCTGGACTGTACATGTCAGGATCATATGTTGAGCAAAAGACCTTAGCCACAGAGTTTCAGATGATTCTACTATGTGTGGACATCATTCCTGATCGTGAAAACGCGTGGGAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

97

Amino Acids

10.89

Weight (kDa)

6.81

Isoelectric Point (pI)

27.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 43	3.1e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05610 AT3G06830 AT4G15980 AT4G15980 AT5G27870 AT5G49180
fragaria_vesca	FvH4_4g18670 FvH4_4g18670 FvH4_4g18670 FvH4_4g18690 FvH4_4g18690
malus_domestica	MD04G1198100.v1.1 MD12G1210700.v1.1 MD13G1164500.v1.1 MD13G1164600.v1.1 MD13G1164700.v1.1 MD13G1164800.v1.1 MD16G1164200.v1.1 MD16G1164300.v1.1
prunus_persica	Prupe.1G123500_v2.0.a1 Prupe.1G123700_v2.0.a1 Prupe.1G123800_v2.0.a1 Prupe.1G131900_v2.0.a1 Prupe.1G132000_v2.0.a1 Prupe.1G132300_v2.0.a1 Prupe.6G318600_v2.0.a1
pyrus_communis	pycom13g14040
rosa_chinensis	RchiOBHm_Chr2g0115181 RchiOBHm_Chr3g0456331 RchiOBHm_Chr4g0423371 RchiOBHm_Chr4g0423391
rosa_laevigata	RLG00000007564 RLG00000007566 RLG00000018164 RLG00000025312
rosa_multiflora	Rmu_co8436939.1_g000001 Rmu_sc0002607.1_g000023 Rmu_sc0002784.1_g000024 Rmu_sc0005307.1_g000019 Rmu_sc0018054.1_g000005 Rmu_sc0031272.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130660 Rroxscaffold_5G00365560 Rroxscaffold_5G00365590
rosa_rugosa	Rorug02G0194200 Rorug04G0186900 Rorug04G0187000 Rorug04G0187100 Rorug04G0187200
rosa_samantha	Rh2AG252700 Rh2BG262300 Rh2CG257300 Rh2DG260900 Rh3BG074700 Rh3CG074300 Rh3DG076200 Rh4AG246000 Rh4AG246100 Rh4BG251500 Rh4BG251600 Rh4CG259800 Rh4CG260100 Rh4DG246400 Rh4DG247000
rosa_wichuraiana	Rw2G019710 Rw3G006230 Rw4G021140 Rw4G021150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	130
AccII	CGCG	1 cut(s)	281
AclWI	GGATC	1 cut(s)	205
AfaI	GTAC	1 cut(s)	188
AflIII	ACRYGT	2 cut(s)	189, 279
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	2 cut(s)	11, 85
AluI	AGCT	2 cut(s)	11, 85
Alw21I	GWGCWC	2 cut(s)	13, 45
Alw44I	GTGCAC	1 cut(s)	41
AlwI	GGATC	1 cut(s)	205
ApaLI	GTGCAC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	130
Bbv12I	GWGCWC	2 cut(s)	13, 45
BciT130I	CCWGG	1 cut(s)	158
BcnI	CCSGG	1 cut(s)	60
BfaI	CTAG	1 cut(s)	14
BlpI	GCTNAGC	1 cut(s)	86
Bme1390I	CCNGG	2 cut(s)	60, 158
BmrFI	CCNGG	2 cut(s)	60, 158
BpiI	GAAGAC	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	220
Bpu1102I	GCTNAGC	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	138
BseSI	GKGCMC	1 cut(s)	45
Bsh1236I	CGCG	1 cut(s)	281
BsiHKAI	GWGCWC	2 cut(s)	13, 45
BsiSI	CCGG	1 cut(s)	60
Bsp1286I	GDGCHC	2 cut(s)	13, 45
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	197, 268
Bsp1720I	GCTNAGC	1 cut(s)	86
Bsp19I	CCATGG	1 cut(s)	115
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	281
BspPI	GGATC	1 cut(s)	205
BsrGI	TGTACA	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	2 cut(s)	197, 268
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	77
BstAUI	TGTACA	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	19, 23
BstDEI	CTNAG	3 cut(s)	78, 86, 220
BstDSI	CCRYGG	1 cut(s)	115
BstEII	GGTNACC	1 cut(s)	95
BstFNI	CGCG	1 cut(s)	281
BstKTI	GATC	2 cut(s)	200, 271
BstMBI	GATC	2 cut(s)	197, 268
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	2 cut(s)	21, 193
BstPI	GGTNACC	1 cut(s)	95
BstSCI	CCNGG	2 cut(s)	58, 156
BstSLI	GKGCMC	1 cut(s)	45
BstUI	CGCG	1 cut(s)	281
BstV2I	GAAGAC	1 cut(s)	130
BtgI	CCRYGG	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	19, 23
CsiI	ACCWGGT	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	3 cut(s)	18, 116, 190
CviJI	RGCY	4 cut(s)	11, 58, 85, 224
CviKI_1	RGCY	4 cut(s)	11, 58, 85, 224
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	3 cut(s)	78, 86, 220
DpnI	GATC	2 cut(s)	199, 270
DpnII	GATC	2 cut(s)	197, 268
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	11
Eco91I	GGTNACC	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	3 cut(s)	21, 119, 193
FaiI	YATR	9 cut(s)	19, 27, 117, 122, 191, 202, 204, 250, 292
FatI	CATG	3 cut(s)	17, 115, 189
FauNDI	CATATG	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	130
FriOI	GRGCYC	1 cut(s)	13
FspBI	CTAG	1 cut(s)	14
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	3 cut(s)	21, 119, 193
HinfI	GANTC	1 cut(s)	241
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	3 cut(s)	43, 131, 256
Hpy188I	TCNGA	2 cut(s)	81, 237
Hpy188III	TCNNGA	4 cut(s)	180, 195, 266, 272
Hpy8I	GTNNAC	3 cut(s)	43, 131, 256
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4V	TGCA	3 cut(s)	25, 43, 151
HpyF3I	CTNAG	3 cut(s)	78, 86, 220
Hsp92II	CATG	3 cut(s)	21, 119, 193
Kzo9I	GATC	2 cut(s)	197, 268
LpnPI	CCDG	9 cut(s)	17, 73, 113, 119, 143, 165, 170, 180, 279
MabI	ACCWGGT	1 cut(s)	156
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	2 cut(s)	199, 270
MboI	GATC	2 cut(s)	197, 268
MboII	GAAGA	2 cut(s)	64, 130
MhlI	GDGCHC	2 cut(s)	13, 45
MluCI	AATT	1 cut(s)	146
MluI	ACGCGT	1 cut(s)	279
MnlI	CCTC	1 cut(s)	80
MseI	TTAA	1 cut(s)	54
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	2 cut(s)	60, 158
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	281
NciI	CCSGG	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	115
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	2 cut(s)	197, 268
NlaIII	CATG	3 cut(s)	21, 119, 193
NspI	RCATGY	2 cut(s)	21, 193
PaeI	GCATGC	1 cut(s)	21
PciI	ACATGT	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	241
PscI	ACATGT	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	156
PspEI	GGTNACC	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	156
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	197, 268
ScrFI	CCNGG	2 cut(s)	60, 158
SduI	GDGCHC	2 cut(s)	13, 45
SetI	ASST	7 cut(s)	13, 87, 97, 102, 127, 162, 221
SexAI	ACCWGGT	1 cut(s)	156
SphI	GCATGC	1 cut(s)	21
Sse9I	AATT	1 cut(s)	146
SspMI	CTAG	1 cut(s)	14
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	2 cut(s)	58, 156
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	186
TasI	AATT	1 cut(s)	146
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
VneI	GTGCAC	1 cut(s)	41
XceI	RCATGY	2 cut(s)	21, 193
XmiI	GTMKAC	1 cut(s)	130
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.