Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005307.1

Orthogroup ID

OG0000809

Physical Location & Seq

Genomic Coordinates Reverse (-)

82459 .. 83526

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005307.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atgagcggagatgaccgtcacgccaagaagaagaaggtcgccatcctcggcgtgtcggcgttgattctggtggccatggtggttgctgtagctgttggggtcaccaaaagccagaaagacggaaaggacgagaagaaaccagccacaacatccaaggcaattgaagccgtctgccaaccaacagactacaaggaaacttgccaaaacagcctctccgcaaaagccagcaacgtcaccgacccaaaagagctcatcaagattgggttccagatcgccatagacaaaatccaagaggtgatcaacaactcccccaccttgaaagagcttgccaaggatccgaggagcaaccaggcccttcagaactgcaaagaactcttagagttctccatcaatgatctgaagaagtcggtcgaccagatcggccccttcgaagttagcaagctcaaagcatatgtcgacgaccttaaggtttggcttagtgcctccatcagctacgaacagacttgcttggatggattcgtggactccaagggtgaggctgggaccaaaatgcagggcttcttaaagcaatcacaagaactcaccaagaacggacttgccatggtcactgaaataggcaacctcttggtaaatggcaaccttaaaacccaacgtcgtctcttagctgaggttgaggctccaatagaccaaaagaaggcaaataagatcatcccctcatggattgatggacgcaagctcgacctcgctaccgccaatccgagctcccttaaacccgacgttgtagtcgctgcggatggaagtgaaaattacaagaccatcaacgaggctctccaggatatgcccaagaacggtggtgaaaaaacatttgtgatctacatcaaagagggaacgtatgatgagaatgtgttggttgacaagcatatgaccaatgtcatgttcatcggtgatggccctaccaagaccaagatcacgggtaacaagaactatgccgatggtgtccaaacatacaaaaccgcaactgtcggtgagtgtcgctatataattcgttcgtcatcttcctttggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

355

Amino Acids

38.71

Weight (kDa)

8.55

Isoelectric Point (pI)

26.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05610 AT3G06830 AT4G15980 AT4G15980 AT5G27870 AT5G49180
fragaria_vesca	FvH4_4g18670 FvH4_4g18670 FvH4_4g18670 FvH4_4g18690 FvH4_4g18690
malus_domestica	MD04G1198100.v1.1 MD12G1210700.v1.1 MD13G1164500.v1.1 MD13G1164600.v1.1 MD13G1164700.v1.1 MD13G1164800.v1.1 MD16G1164200.v1.1 MD16G1164300.v1.1
prunus_persica	Prupe.1G123500_v2.0.a1 Prupe.1G123700_v2.0.a1 Prupe.1G123800_v2.0.a1 Prupe.1G131900_v2.0.a1 Prupe.1G132000_v2.0.a1 Prupe.1G132300_v2.0.a1 Prupe.6G318600_v2.0.a1
pyrus_communis	pycom13g14040
rosa_chinensis	RchiOBHm_Chr2g0115181 RchiOBHm_Chr3g0456331 RchiOBHm_Chr4g0423371 RchiOBHm_Chr4g0423391
rosa_laevigata	RLG00000007564 RLG00000007566 RLG00000018164 RLG00000025312
rosa_multiflora	Rmu_co8436939.1_g000001 Rmu_sc0002607.1_g000023 Rmu_sc0002784.1_g000024 Rmu_sc0005307.1_g000019 Rmu_sc0018054.1_g000005 Rmu_sc0031272.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130660 Rroxscaffold_5G00365560 Rroxscaffold_5G00365590
rosa_rugosa	Rorug02G0194200 Rorug04G0186900 Rorug04G0187000 Rorug04G0187100 Rorug04G0187200
rosa_samantha	Rh2AG252700 Rh2BG262300 Rh2CG257300 Rh2DG260900 Rh3BG074700 Rh3CG074300 Rh3DG076200 Rh4AG246000 Rh4AG246100 Rh4BG251500 Rh4BG251600 Rh4CG259800 Rh4CG260100 Rh4DG246400 Rh4DG247000
rosa_wichuraiana	Rw2G019710 Rw3G006230 Rw4G021140 Rw4G021150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	782
AccBSI	CCGCTC	1 cut(s)	6
AccI	GTMKAC	2 cut(s)	411, 456
AciI	CCGC	5 cut(s)	6, 216, 750, 791, 1014
AclWI	GGATC	2 cut(s)	329, 342
AcoI	YGGCCR	1 cut(s)	72
AcuI	CTGAAG	2 cut(s)	341, 419
AfiI	CCNNNNNNNGG	2 cut(s)	694, 848
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	2 cut(s)	164, 319
AjnI	CCWGG	2 cut(s)	348, 831
AjuI	GAANNNNNNNTTGG	2 cut(s)	920, 952
AluBI	AGCT	8 cut(s)	92, 250, 325, 442, 492, 665, 736, 762
AluI	AGCT	8 cut(s)	92, 250, 325, 442, 492, 665, 736, 762
Alw21I	GWGCWC	2 cut(s)	252, 764
Alw26I	GTCTC	1 cut(s)	662
AlwI	GGATC	2 cut(s)	329, 342
AoxI	GGCC	4 cut(s)	72, 351, 421, 949
ApeKI	GCWGC	1 cut(s)	788
ArsI	GACNNNNNNTTYG	2 cut(s)	438, 470
AspS9I	GGNCC	4 cut(s)	352, 422, 543, 950
AsuHPI	GGTGA	8 cut(s)	94, 226, 307, 545, 574, 866, 956, 1037
AsuII	TTCGAA	1 cut(s)	429
AvaII	GGWCC	1 cut(s)	543
BalI	TGGCCA	1 cut(s)	74
BamHI	GGATCC	1 cut(s)	334
BanII	GRGCYC	2 cut(s)	252, 764
Bbv12I	GWGCWC	2 cut(s)	252, 764
BbvCI	CCTCAGC	1 cut(s)	666
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	9 cut(s)	50, 395, 494, 506, 719, 788, 824, 941, 986
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	2 cut(s)	350, 833
BclI	TGATCA	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	662
BfmI	CTRYAG	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	464
BisI	GCNGC	1 cut(s)	789
BlsI	GCNGC	1 cut(s)	790
Bme1390I	CCNGG	2 cut(s)	350, 833
Bme18I	GGWCC	1 cut(s)	543
BmgT120I	GGNCC	4 cut(s)	352, 422, 543, 950
BmiI	GGNNCC	5 cut(s)	266, 336, 424, 544, 678
BmrFI	CCNGG	2 cut(s)	350, 833
BoxI	GACNNNNGTC	1 cut(s)	929
BpmI	CTGGAG	1 cut(s)	815
Bpu10I	CCTNAGC	1 cut(s)	666
Bpu14I	TTCGAA	1 cut(s)	429
BsaBI	GATNNNNATC	1 cut(s)	875
BsaJI	CCNNGG	7 cut(s)	46, 75, 153, 330, 338, 528, 600
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	2 cut(s)	694, 848
Bse8I	GATNNNNATC	1 cut(s)	875
BseBI	CCWGG	2 cut(s)	350, 833
BseDI	CCNNGG	7 cut(s)	46, 75, 153, 330, 338, 528, 600
BseGI	GGATG	5 cut(s)	42, 149, 517, 708, 799
BseJI	GATNNNNATC	1 cut(s)	875
BseLI	CCNNNNNNNGG	2 cut(s)	694, 848
BseMII	CTCAG	1 cut(s)	657
BseRI	GAGGAG	1 cut(s)	355
BseXI	GCAGC	1 cut(s)	775
BseYI	CCCAGC	1 cut(s)	539
Bsh1285I	CGRYCG	1 cut(s)	411
BshFI	GGCC	4 cut(s)	74, 353, 423, 951
BsiEI	CGRYCG	1 cut(s)	411
BsiHKAI	GWGCWC	2 cut(s)	252, 764
BslFI	GGGAC	1 cut(s)	556
BslI	CCNNNNNNNGG	2 cut(s)	694, 848
BsmAI	GTCTC	1 cut(s)	662
BsmBI	CGTCTC	1 cut(s)	662
BsmFI	GGGAC	1 cut(s)	556
BsnI	GGCC	4 cut(s)	74, 353, 423, 951
Bsp119I	TTCGAA	1 cut(s)	429
Bsp1286I	GDGCHC	2 cut(s)	252, 764
Bsp143I	GATC	8 cut(s)	270, 297, 334, 394, 417, 705, 870, 966
Bsp19I	CCATGG	2 cut(s)	75, 600
BspACI	CCGC	5 cut(s)	6, 216, 750, 791, 1014
BspANI	GGCC	4 cut(s)	74, 353, 423, 951
BspCNI	CTCAG	1 cut(s)	658
BspLI	GGNNCC	5 cut(s)	266, 336, 424, 544, 678
BspPI	GGATC	2 cut(s)	329, 342
BspT104I	TTCGAA	1 cut(s)	429
BspTI	CTTAAG	1 cut(s)	464
BsrBI	CCGCTC	1 cut(s)	6
BssECI	CCNNGG	7 cut(s)	46, 75, 153, 330, 338, 528, 600
BssMI	GATC	8 cut(s)	270, 297, 334, 394, 417, 705, 870, 966
BssT1I	CCWWGG	5 cut(s)	75, 153, 330, 528, 600
Bst2UI	CCWGG	2 cut(s)	350, 833
Bst4CI	ACNGT	3 cut(s)	17, 851, 1021
BstAFI	CTTAAG	1 cut(s)	464
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	4 cut(s)	226, 327, 440, 734
BstDEI	CTNAG	4 cut(s)	376, 476, 661, 666
BstDSI	CCRYGG	2 cut(s)	75, 600
BstEII	GGTNACC	1 cut(s)	100
BstF5I	GGATG	5 cut(s)	42, 149, 517, 708, 799
BstKTI	GATC	8 cut(s)	273, 300, 337, 397, 420, 708, 873, 969
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	8 cut(s)	270, 297, 334, 394, 417, 705, 870, 966
BstMCI	CGRYCG	1 cut(s)	411
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 207
BstNI	CCWGG	2 cut(s)	350, 833
BstPAI	GACNNNNGTC	1 cut(s)	929
BstPI	GGTNACC	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	348, 831
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	775
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	4 cut(s)	74, 353, 423, 951
BtgI	CCRYGG	2 cut(s)	75, 600
BtsCI	GGATG	5 cut(s)	42, 149, 517, 708, 799
BtsIMutI	CAGTG	1 cut(s)	606
Cac8I	GCNNGC	4 cut(s)	226, 327, 440, 734
Cfr13I	GGNCC	4 cut(s)	352, 422, 543, 950
CseI	GACGC	1 cut(s)	738
CspCI	CAANNNNNGTGG	2 cut(s)	832, 867
CviAII	CATG	4 cut(s)	76, 601, 717, 934
DdeI	CTNAG	4 cut(s)	376, 476, 661, 666
DpnI	GATC	8 cut(s)	272, 299, 336, 396, 419, 707, 872, 968
DpnII	GATC	8 cut(s)	270, 297, 334, 394, 417, 705, 870, 966
DrdI	GACNNNNNNGTC	1 cut(s)	782
DseDI	GACNNNNNNGTC	1 cut(s)	782
EaeI	YGGCCR	1 cut(s)	72
Ecl136II	GAGCTC	2 cut(s)	250, 762
Eco130I	CCWWGG	5 cut(s)	75, 153, 330, 528, 600
Eco24I	GRGCYC	2 cut(s)	252, 764
Eco47I	GGWCC	1 cut(s)	543
Eco53kI	GAGCTC	2 cut(s)	250, 762
Eco57I	CTGAAG	2 cut(s)	341, 419
Eco91I	GGTNACC	1 cut(s)	100
EcoICRI	GAGCTC	2 cut(s)	250, 762
EcoO109I	RGGNCCY	1 cut(s)	352
EcoO65I	GGTNACC	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	348, 831
EcoT14I	CCWWGG	5 cut(s)	75, 153, 330, 528, 600
EcoT38I	GRGCYC	2 cut(s)	252, 764
ErhI	CCWWGG	5 cut(s)	75, 153, 330, 528, 600
Esp3I	CGTCTC	1 cut(s)	662
FaeI	CATG	4 cut(s)	79, 604, 720, 937
FaqI	GGGAC	1 cut(s)	556
FatI	CATG	4 cut(s)	75, 600, 716, 933
FauNDI	CATATG	2 cut(s)	451, 921
FbaI	TGATCA	1 cut(s)	297
FblI	GTMKAC	2 cut(s)	411, 456
Fnu4HI	GCNGC	1 cut(s)	789
FokI	GGATG	5 cut(s)	29, 136, 524, 695, 806
FriOI	GRGCYC	2 cut(s)	252, 764
Fsp4HI	GCNGC	1 cut(s)	789
GluI	GCNGC	1 cut(s)	789
GsaI	CCCAGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	815
HaeIII	GGCC	4 cut(s)	74, 353, 423, 951
HgaI	GACGC	1 cut(s)	738
Hin1II	CATG	4 cut(s)	79, 604, 720, 937
HincII	GTYRAC	3 cut(s)	412, 457, 913
HindII	GTYRAC	3 cut(s)	412, 457, 913
HinfI	GANTC	3 cut(s)	64, 516, 524
HphI	GGTGA	8 cut(s)	94, 226, 307, 545, 574, 866, 956, 1037
Hpy166II	GTNNAC	4 cut(s)	412, 457, 523, 913
Hpy188I	TCNGA	4 cut(s)	339, 360, 399, 759
Hpy188III	TCNNGA	2 cut(s)	256, 268
Hpy8I	GTNNAC	4 cut(s)	412, 457, 523, 913
Hpy99I	CGWCG	3 cut(s)	461, 657, 779
HpyAV	CCTTC	4 cut(s)	28, 365, 436, 688
HpyCH4III	ACNGT	3 cut(s)	17, 851, 1021
HpyCH4IV	ACGT	4 cut(s)	231, 652, 777, 890
HpyCH4V	TGCA	2 cut(s)	366, 553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 207
HpyF3I	CTNAG	4 cut(s)	376, 476, 661, 666
HpySE526I	ACGT	4 cut(s)	231, 652, 777, 890
Hsp92II	CATG	4 cut(s)	79, 604, 720, 937
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	8 cut(s)	270, 297, 334, 394, 417, 705, 870, 966
LmnI	GCTCC	3 cut(s)	342, 682, 767
Lsp1109I	GCAGC	1 cut(s)	775
MaeII	ACGT	4 cut(s)	231, 652, 777, 890
MaeIII	GTNAC	5 cut(s)	17, 100, 232, 604, 974
MalI	GATC	8 cut(s)	272, 299, 336, 396, 419, 707, 872, 968
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	8 cut(s)	270, 297, 334, 394, 417, 705, 870, 966
MboII	GAAGA	5 cut(s)	40, 43, 145, 412, 1047
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	2 cut(s)	252, 764
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	3 cut(s)	159, 805, 1041
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	518
Mox20I	TGGCCA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	4 cut(s)	465, 563, 642, 768
Msp20I	TGGCCA	1 cut(s)	74
MspCI	CTTAAG	1 cut(s)	464
MspR9I	CCNGG	2 cut(s)	350, 833
MunI	CAATTG	1 cut(s)	159
MvaI	CCWGG	2 cut(s)	350, 833
MwoI	GCNNNNNNNGC	2 cut(s)	164, 207
NcoI	CCATGG	2 cut(s)	75, 600
NdeI	CATATG	2 cut(s)	451, 921
NdeII	GATC	8 cut(s)	270, 297, 334, 394, 417, 705, 870, 966
NlaIII	CATG	4 cut(s)	79, 604, 720, 937
NlaIV	GGNNCC	5 cut(s)	266, 336, 424, 544, 678
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	4 cut(s)	17, 100, 232, 604
NspV	TTCGAA	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 426
PfeI	GAWTC	2 cut(s)	64, 516
PfoI	TCCNGGA	1 cut(s)	831
PkrI	GCNGC	1 cut(s)	790
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
PshAI	GACNNNNGTC	1 cut(s)	929
Psp124BI	GAGCTC	2 cut(s)	252, 764
Psp6I	CCWGG	2 cut(s)	348, 831
PspEI	GGTNACC	1 cut(s)	100
PspFI	CCCAGC	1 cut(s)	539
PspGI	CCWGG	2 cut(s)	348, 831
PspN4I	GGNNCC	5 cut(s)	266, 336, 424, 544, 678
PspPI	GGNCC	4 cut(s)	352, 422, 543, 950
PsuI	RGATCY	1 cut(s)	334
SacI	GAGCTC	2 cut(s)	252, 764
SalI	GTCGAC	2 cut(s)	410, 455
SaqAI	TTAA	4 cut(s)	465, 563, 642, 768
SatI	GCNGC	1 cut(s)	789
Sau3AI	GATC	8 cut(s)	270, 297, 334, 394, 417, 705, 870, 966
Sau96I	GGNCC	4 cut(s)	352, 422, 543, 950
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	2 cut(s)	350, 833
SduI	GDGCHC	2 cut(s)	252, 764
SfcI	CTRYAG	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	429
SinI	GGWCC	1 cut(s)	543
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	3 cut(s)	159, 805, 1041
SsiI	CCGC	5 cut(s)	6, 216, 750, 791, 1014
SstI	GAGCTC	2 cut(s)	252, 764
StyD4I	CCNGG	2 cut(s)	348, 831
StyI	CCWWGG	5 cut(s)	75, 153, 330, 528, 600
TaaI	ACNGT	3 cut(s)	17, 851, 1021
TaiI	ACGT	4 cut(s)	234, 655, 780, 893
TaqI	TCGA	4 cut(s)	411, 429, 456, 738
TaqII	GACCGA	1 cut(s)	397
TasI	AATT	3 cut(s)	159, 805, 1041
TfiI	GAWTC	2 cut(s)	64, 516
Tru1I	TTAA	4 cut(s)	465, 563, 642, 768
Tru9I	TTAA	4 cut(s)	465, 563, 642, 768
TscAI	CASTG	1 cut(s)	613
TseFI	GTSAC	4 cut(s)	17, 100, 232, 604
TseI	GCWGC	1 cut(s)	788
Tsp45I	GTSAC	4 cut(s)	17, 100, 232, 604
TspDTI	ATGAA	1 cut(s)	928
TspGWI	ACGGA	2 cut(s)	135, 606
TspRI	CASTG	1 cut(s)	613
Vha464I	CTTAAG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	543
XmiI	GTMKAC	2 cut(s)	411, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.