Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000809

Physical Location & Seq

Genomic Coordinates Forward (+)

18072423 .. 18076165

Gene Structure 3743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0194200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGTTTGTGGGAGGCTTTTCTCAATTGGCTCCGTAGCCTCTTTTTCAAGCAGGAAATGGAGCTATCTTTGATAGGACTTCAGAATGCTGGAAAGACTTCTCTTGTAAATGTTGTTGCAACGGGAGGATACAGTGAGGACATGATCCCTACGGTAGGATTCAATATGAAGAAGGTAACCAAAGGGAATGTTACAATAAAGTTGTGGGATCTTGGAGGTCAACCCAGGTTTCGTAGCATGTGGGAGCGATACTGTCGTGCGGTTTCTGCTATAGTCTATGTTGTTGATGCTGCTGATCCTGATAACTTGAGCACCTCAAGAGGGGAACTTCATGACTTGCTTAGCAAATCCTCACTTAATGGTATCCCATTGCTTATCCTGGGTAACAAGATTGATAAACCAGGAGCTCTGAGTAAACAAGCTTTGACTGATGAAATGGGACTCAAGTCAATTACTGATAGAGAAGTATGTTGCTTCATGATCTCATGCAAGAACTCAACCAACATAGACTCAGTTATTGATTGGCTTGTAAAGCATTCCAAATCAAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

184

Amino Acids

20.41

Weight (kDa)

8.66

Isoelectric Point (pI)

22.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 178	6.9e-47	ADP-ribosylation factor family
Roc	PF08477	22 - 132	5.8e-16	Ras of Complex, Roc, domain of DAPkinase
SRPRB	PF09439	22 - 145	4.9e-09	Signal recognition particle receptor beta subunit
Ras	PF00071	23 - 179	3.7e-18	Ras family
MMR_HSR1	PF01926	23 - 130	1.4e-06	50S ribosome-binding GTPase
Gtr1_RagA	PF04670	24 - 139	2.6e-09	Gtr1/RagA G protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05610 AT3G06830 AT4G15980 AT4G15980 AT5G27870 AT5G49180
fragaria_vesca	FvH4_4g18670 FvH4_4g18670 FvH4_4g18670 FvH4_4g18690 FvH4_4g18690
malus_domestica	MD04G1198100.v1.1 MD12G1210700.v1.1 MD13G1164500.v1.1 MD13G1164600.v1.1 MD13G1164700.v1.1 MD13G1164800.v1.1 MD16G1164200.v1.1 MD16G1164300.v1.1
prunus_persica	Prupe.1G123500_v2.0.a1 Prupe.1G123700_v2.0.a1 Prupe.1G123800_v2.0.a1 Prupe.1G131900_v2.0.a1 Prupe.1G132000_v2.0.a1 Prupe.1G132300_v2.0.a1 Prupe.6G318600_v2.0.a1
pyrus_communis	pycom13g14040
rosa_chinensis	RchiOBHm_Chr2g0115181 RchiOBHm_Chr3g0456331 RchiOBHm_Chr4g0423371 RchiOBHm_Chr4g0423391
rosa_laevigata	RLG00000007564 RLG00000007566 RLG00000018164 RLG00000025312
rosa_multiflora	Rmu_co8436939.1_g000001 Rmu_sc0002607.1_g000023 Rmu_sc0002784.1_g000024 Rmu_sc0005307.1_g000019 Rmu_sc0018054.1_g000005 Rmu_sc0031272.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130660 Rroxscaffold_5G00365560 Rroxscaffold_5G00365590
rosa_rugosa	Rorug02G0194200 Rorug04G0186900 Rorug04G0187000 Rorug04G0187100 Rorug04G0187200
rosa_samantha	Rh2AG252700 Rh2BG262300 Rh2CG257300 Rh2DG260900 Rh3BG074700 Rh3CG074300 Rh3DG076200 Rh4AG246000 Rh4AG246100 Rh4BG251500 Rh4BG251600 Rh4CG259800 Rh4CG260100 Rh4DG246400 Rh4DG247000
rosa_wichuraiana	Rw2G019710 Rw3G006230 Rw4G021140 Rw4G021150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	260
AclWI	GGATC	3 cut(s)	139, 216, 290
AcuI	CTGAAG	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	155, 321
AgsI	TTSAA	2 cut(s)	49, 163
AjnI	CCWGG	3 cut(s)	224, 378, 400
AluBI	AGCT	4 cut(s)	64, 407, 422, 552
AluI	AGCT	4 cut(s)	64, 407, 422, 552
Alw21I	GWGCWC	2 cut(s)	314, 409
AlwI	GGATC	3 cut(s)	139, 216, 290
ApeKI	GCWGC	1 cut(s)	290
Asp700I	GAANNNNTTC	1 cut(s)	97
BaeI	ACNNNNGTAYC	2 cut(s)	241, 274
BanII	GRGCYC	1 cut(s)	409
Bbv12I	GWGCWC	2 cut(s)	314, 409
BbvI	GCAGC	1 cut(s)	277
BciT130I	CCWGG	3 cut(s)	226, 380, 402
BciVI	GTATCC	2 cut(s)	122, 374
BfmI	CTRYAG	1 cut(s)	270
BfuI	GTATCC	2 cut(s)	122, 374
BisI	GCNGC	1 cut(s)	291
BlpI	GCTNAGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	3 cut(s)	226, 380, 402
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	3 cut(s)	226, 380, 402
BmsI	GCATC	1 cut(s)	277
BoxI	GACNNNNGTC	1 cut(s)	445
Bpu1102I	GCTNAGC	1 cut(s)	341
BpuEI	CTTGAG	3 cut(s)	301, 328, 428
BsaJI	CCNNGG	2 cut(s)	224, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 321
Bse3DI	GCAATG	1 cut(s)	368
BseBI	CCWGG	3 cut(s)	226, 380, 402
BseDI	CCNNGG	2 cut(s)	224, 379
BseLI	CCNNNNNNNGG	2 cut(s)	155, 321
BseMI	GCAATG	1 cut(s)	368
BseMII	CTCAG	2 cut(s)	401, 525
BseXI	GCAGC	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	314, 409
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	2 cut(s)	155, 321
BsmFI	GGGAC	1 cut(s)	453
BsmI	GAATGC	2 cut(s)	91, 535
Bsp1286I	GDGCHC	2 cut(s)	314, 409
Bsp143I	GATC	4 cut(s)	144, 208, 295, 480
Bsp1720I	GCTNAGC	1 cut(s)	341
BspACI	CCGC	1 cut(s)	260
BspCNI	CTCAG	2 cut(s)	402, 524
BspHI	TCATGA	2 cut(s)	331, 477
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	3 cut(s)	139, 216, 290
BsrDI	GCAATG	1 cut(s)	368
BssECI	CCNNGG	2 cut(s)	224, 379
BssMI	GATC	4 cut(s)	144, 208, 295, 480
Bst2UI	CCWGG	3 cut(s)	226, 380, 402
Bst4CI	ACNGT	3 cut(s)	134, 154, 254
BstDEI	CTNAG	3 cut(s)	341, 410, 511
BstEII	GGTNACC	1 cut(s)	175
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstKTI	GATC	4 cut(s)	147, 211, 298, 483
BstMBI	GATC	4 cut(s)	144, 208, 295, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 532
BstNI	CCWGG	3 cut(s)	226, 380, 402
BstNSI	RCATGY	1 cut(s)	241
BstPAI	GACNNNNGTC	1 cut(s)	445
BstPI	GGTNACC	1 cut(s)	175
BstSCI	CCNGG	3 cut(s)	224, 378, 400
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuI	GTATCC	2 cut(s)	122, 374
BtsIMutI	CAGTG	1 cut(s)	139
CciI	TCATGA	2 cut(s)	331, 477
CviAII	CATG	5 cut(s)	142, 238, 332, 478, 486
CviJI	RGCY	8 cut(s)	17, 31, 39, 64, 407, 422, 526, 552
CviKI_1	RGCY	8 cut(s)	17, 31, 39, 64, 407, 422, 526, 552
DdeI	CTNAG	3 cut(s)	341, 410, 511
DpnI	GATC	4 cut(s)	146, 210, 297, 482
DpnII	GATC	4 cut(s)	144, 208, 295, 480
Ecl136II	GAGCTC	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	407
Eco57I	CTGAAG	1 cut(s)	65
Eco91I	GGTNACC	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	407
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoO65I	GGTNACC	1 cut(s)	175
EcoRII	CCWGG	3 cut(s)	224, 378, 400
EcoT38I	GRGCYC	1 cut(s)	409
FaeI	CATG	5 cut(s)	145, 241, 335, 481, 489
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	5 cut(s)	141, 237, 331, 477, 485
Fnu4HI	GCNGC	1 cut(s)	291
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	1 cut(s)	291
GluI	GCNGC	1 cut(s)	291
Hin1II	CATG	5 cut(s)	145, 241, 335, 481, 489
HincII	GTYRAC	1 cut(s)	221
HindII	GTYRAC	1 cut(s)	221
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	3 cut(s)	159, 441, 509
Hpy166II	GTNNAC	2 cut(s)	221, 416
Hpy188I	TCNGA	2 cut(s)	84, 411
Hpy188III	TCNNGA	4 cut(s)	299, 318, 332, 478
Hpy8I	GTNNAC	2 cut(s)	221, 416
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	3 cut(s)	134, 154, 254
HpyCH4V	TGCA	2 cut(s)	119, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 532
HpyF3I	CTNAG	3 cut(s)	341, 410, 511
Hsp92II	CATG	5 cut(s)	145, 241, 335, 481, 489
Kzo9I	GATC	4 cut(s)	144, 208, 295, 480
LmnI	GCTCC	4 cut(s)	36, 61, 244, 404
LpnPI	CCDG	9 cut(s)	38, 75, 211, 238, 312, 365, 387, 392, 414
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	277
MaeIII	GTNAC	3 cut(s)	175, 190, 383
MalI	GATC	4 cut(s)	146, 210, 297, 482
MboI	GATC	4 cut(s)	144, 208, 295, 480
MboII	GAAGA	1 cut(s)	181
MfeI	CAATTG	1 cut(s)	25
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	314, 409
MluCI	AATT	2 cut(s)	25, 450
MlyI	GAGTC	2 cut(s)	435, 503
MnlI	CCTC	8 cut(s)	7, 50, 119, 130, 209, 314, 325, 361
MroXI	GAANNNNTTC	1 cut(s)	97
MseI	TTAA	1 cut(s)	357
MspR9I	CCNGG	3 cut(s)	226, 380, 402
MunI	CAATTG	1 cut(s)	25
Mva1269I	GAATGC	2 cut(s)	91, 535
MvaI	CCWGG	3 cut(s)	226, 380, 402
MwoI	GCNNNNNNNGC	2 cut(s)	266, 532
NdeII	GATC	4 cut(s)	144, 208, 295, 480
NlaIII	CATG	5 cut(s)	145, 241, 335, 481, 489
NlaIV	GGNNCC	1 cut(s)	32
NspI	RCATGY	1 cut(s)	241
PagI	TCATGA	2 cut(s)	331, 477
PctI	GAATGC	2 cut(s)	91, 535
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	2 cut(s)	435, 503
PpsI	GAGTC	2 cut(s)	435, 503
PshAI	GACNNNNGTC	1 cut(s)	445
Psp124BI	GAGCTC	1 cut(s)	409
Psp6I	CCWGG	3 cut(s)	224, 378, 400
PspEI	GGTNACC	1 cut(s)	175
PspGI	CCWGG	3 cut(s)	224, 378, 400
PspN4I	GGNNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	208
SacI	GAGCTC	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	4 cut(s)	144, 208, 295, 480
SchI	GAGTC	2 cut(s)	435, 503
ScrFI	CCNGG	3 cut(s)	226, 380, 402
SduI	GDGCHC	2 cut(s)	314, 409
SetI	ASST	8 cut(s)	66, 177, 220, 230, 317, 409, 424, 554
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	270
SmlI	CTYRAG	3 cut(s)	307, 316, 443
SmoI	CTYRAG	3 cut(s)	307, 316, 443
Sse9I	AATT	2 cut(s)	25, 450
SsiI	CCGC	1 cut(s)	260
SstI	GAGCTC	1 cut(s)	409
StyD4I	CCNGG	3 cut(s)	224, 378, 400
TaaI	ACNGT	3 cut(s)	134, 154, 254
TasI	AATT	2 cut(s)	25, 450
TfiI	GAWTC	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	4 cut(s)	182, 320, 447, 466
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	139
XagI	CCTNNNNNAGG	1 cut(s)	153
XceI	RCATGY	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.