Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Reverse (-)

13590765 .. 13591543

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAAAGCAAGGCACATGAGAAAGATCTCAACCTCAAGGCAACAGAGCTGACACTTGGGTTGCCAGGGAGAGATGAAATTATTGAGCTTCCTAATCAAAACAAGAAGAGAGGACTGCCAGTTGACTCAAAAAATGAAGAAGGAAGCACTGATGCTAAAAACGCTCAAAAGGAAACCCCTCCTGCAAAGTGTTGGTATGACAGGGCACAAATAGTGGGGTGGCCACCAATCAGATCTTATAGGAAGAACAGCCTCCAAGCAAATAAAAATGCAGAGGGTGAGACTGCTACTGGGATTTATGTGAAGGTGAGCATGGATGGAGCACCTTACCTCAGAAAGATTGATCTTAAGGTTTACAAATGCTACCCAGAACTCCTCAAGGCCTTGGAAGTCATGTTTAAGTTTACTATAGGTCAATACTCAGAGAGGGAAGGCTACAAAGGATCAGAATACGCACCTACTTATAAGGACAAAGATGGTGATTGGATGCTGGTTGGAGATGTTCCATGGGATATGTTCATGTCATCCTGCAAGAAGTTGAGAATCATGAAAGGATCAGAGGCCAGAGGCTTGGGGTGTGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

196

Amino Acids

22.05

Weight (kDa)

8.51

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	14 - 192	8.5e-59	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
AclWI	GGATC	2 cut(s)	451, 562
AcoI	YGGCCR	1 cut(s)	221
AflII	CTTAAG	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	2 cut(s)	49, 88
AluI	AGCT	2 cut(s)	49, 88
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	2 cut(s)	451, 562
AoxI	GGCC	3 cut(s)	221, 381, 561
AsuHPI	GGTGA	3 cut(s)	290, 319, 491
BaeGI	GKGCMC	1 cut(s)	208
BalI	TGGCCA	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	325
BccI	CCATC	2 cut(s)	311, 470
BciT130I	CCWGG	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	408
BfrI	CTTAAG	1 cut(s)	347
BglII	AGATCT	2 cut(s)	25, 233
Bme1390I	CCNGG	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	66
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	142, 477
BmuI	ACTGGG	1 cut(s)	300
BpuEI	CTTGAG	2 cut(s)	20, 362
BsaJI	CCNNGG	3 cut(s)	65, 384, 506
Bse1I	ACTGG	2 cut(s)	119, 295
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	3 cut(s)	65, 384, 506
BseGI	GGATG	3 cut(s)	322, 492, 524
BseMII	CTCAG	2 cut(s)	346, 435
BseNI	ACTGG	2 cut(s)	119, 295
BseRI	GAGGAG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	208
BshFI	GGCC	3 cut(s)	223, 383, 563
BsiHKAI	GWGCWC	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	275
BsnI	GGCC	3 cut(s)	223, 383, 563
Bsp1286I	GDGCHC	2 cut(s)	208, 325
Bsp143I	GATC	5 cut(s)	25, 233, 343, 443, 554
Bsp19I	CCATGG	1 cut(s)	506
BspANI	GGCC	3 cut(s)	223, 383, 563
BspCNI	CTCAG	2 cut(s)	345, 434
BspHI	TCATGA	1 cut(s)	546
BspPI	GGATC	2 cut(s)	451, 562
BspTI	CTTAAG	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	119, 295
BssECI	CCNNGG	3 cut(s)	65, 384, 506
BssMI	GATC	5 cut(s)	25, 233, 343, 443, 554
BssT1I	CCWWGG	2 cut(s)	384, 506
Bst2UI	CCWGG	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	101
BstAFI	CTTAAG	1 cut(s)	347
BstDEI	CTNAG	2 cut(s)	332, 421
BstDSI	CCRYGG	1 cut(s)	506
BstF5I	GGATG	3 cut(s)	322, 492, 524
BstKTI	GATC	5 cut(s)	28, 236, 346, 446, 557
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	5 cut(s)	25, 233, 343, 443, 554
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	408
BstSLI	GKGCMC	1 cut(s)	208
BstX2I	RGATCY	2 cut(s)	25, 233
BstXI	CCANNNNNNTGG	1 cut(s)	571
BstYI	RGATCY	2 cut(s)	25, 233
BsuRI	GGCC	3 cut(s)	223, 383, 563
BtgI	CCRYGG	1 cut(s)	506
BtsCI	GGATG	3 cut(s)	322, 492, 524
BtsIMutI	CAGTG	1 cut(s)	147
CciI	TCATGA	1 cut(s)	546
CviAII	CATG	6 cut(s)	17, 313, 394, 507, 520, 547
CviJI	RGCY	8 cut(s)	49, 88, 223, 252, 383, 435, 563, 570
CviKI_1	RGCY	8 cut(s)	49, 88, 223, 252, 383, 435, 563, 570
DdeI	CTNAG	2 cut(s)	332, 421
DpnI	GATC	5 cut(s)	27, 235, 345, 445, 556
DpnII	GATC	5 cut(s)	25, 233, 343, 443, 554
EaeI	YGGCCR	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	384, 506
Eco147I	AGGCCT	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	2 cut(s)	384, 506
ErhI	CCWWGG	2 cut(s)	384, 506
FaeI	CATG	6 cut(s)	20, 316, 397, 510, 523, 550
FatI	CATG	6 cut(s)	16, 312, 393, 506, 519, 546
FokI	GGATG	3 cut(s)	329, 499, 511
HaeIII	GGCC	3 cut(s)	223, 383, 563
Hin1II	CATG	6 cut(s)	20, 316, 397, 510, 523, 550
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	2 cut(s)	125, 543
HphI	GGTGA	3 cut(s)	290, 319, 491
Hpy166II	GTNNAC	3 cut(s)	124, 355, 405
Hpy188I	TCNGA	5 cut(s)	233, 335, 424, 448, 559
Hpy188III	TCNNGA	1 cut(s)	547
Hpy8I	GTNNAC	3 cut(s)	124, 355, 405
HpyAV	CCTTC	3 cut(s)	134, 298, 425
HpyCH4V	TGCA	3 cut(s)	185, 272, 531
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	332, 421
Hsp92II	CATG	6 cut(s)	20, 316, 397, 510, 523, 550
Kzo9I	GATC	5 cut(s)	25, 233, 343, 443, 554
LmnI	GCTCC	1 cut(s)	320
LweI	GCATC	2 cut(s)	142, 477
MalI	GATC	5 cut(s)	27, 235, 345, 445, 556
MboI	GATC	5 cut(s)	25, 233, 343, 443, 554
MboII	GAAGA	3 cut(s)	118, 149, 256
MflI	RGATCY	2 cut(s)	25, 233
MhlI	GDGCHC	2 cut(s)	208, 325
MlsI	TGGCCA	1 cut(s)	223
MluCI	AATT	1 cut(s)	78
MluNI	TGGCCA	1 cut(s)	223
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	475
Mox20I	TGGCCA	1 cut(s)	223
MscI	TGGCCA	1 cut(s)	223
MseI	TTAA	2 cut(s)	348, 399
Msp20I	TGGCCA	1 cut(s)	223
MspCI	CTTAAG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	506
NdeII	GATC	5 cut(s)	25, 233, 343, 443, 554
NlaIII	CATG	6 cut(s)	20, 316, 397, 510, 523, 550
PagI	TCATGA	1 cut(s)	546
PceI	AGGCCT	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	543
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PsiI	TTATAA	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PsuI	RGATCY	2 cut(s)	25, 233
SaqAI	TTAA	2 cut(s)	348, 399
Sau3AI	GATC	5 cut(s)	25, 233, 343, 443, 554
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	2 cut(s)	208, 325
SetI	ASST	9 cut(s)	36, 51, 90, 309, 328, 333, 354, 415, 460
SfaNI	GCATC	2 cut(s)	142, 477
SfcI	CTRYAG	1 cut(s)	408
SmlI	CTYRAG	3 cut(s)	35, 347, 377
SmoI	CTYRAG	3 cut(s)	35, 347, 377
Sse9I	AATT	1 cut(s)	78
SseBI	AGGCCT	1 cut(s)	383
StuI	AGGCCT	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	2 cut(s)	384, 506
TasI	AATT	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	543
Tru1I	TTAA	2 cut(s)	348, 399
Tru9I	TTAA	2 cut(s)	348, 399
TscAI	CASTG	1 cut(s)	154
TspDTI	ATGAA	4 cut(s)	90, 150, 508, 563
TspRI	CASTG	1 cut(s)	154
Vha464I	CTTAAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.