Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002365

Physical Location & Seq

Genomic Coordinates Reverse (-)

10021672 .. 10023748

Gene Structure 2077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCAGCGACGGCGTTAGAGAAGCTTTTGCAAGCGGGCACTAAGATCGTCGGAGTCGGCAGAAACTACGCCGCCCACGCCAAAGAACTCGGCAACGCCGTCCCCAAGGAGCCCGTGCTTTTCCTCAAACCGACGTCGTCTTACTTGAAGAACGGCGGCACGATCGAAGTCCCTCACCCTCTGTTGTCGTTGGACCATGAGGTAGAGCTGGCGGTGATAATCTCCCAGAAGGCTCGCGATGTTCCGCAATCCACAGCCATGGATTACGTCGCTGGTAAATTTGCACTTGCTCTGGATATGACTGCCAGAGAAATTCAAGCTTCTGCTAAGTCTGCAGGTCTTCCATGGACCATAGCTAAGGGGCAGGACACCTTCACACCAATCAGTTCCGCACTGCCCAAGGAAATGGTGCCAAACCCGGATGATATAGAGTTGTGGCTGAAGGTAGATGGAGAATTGAGGCAGAAAGGCTCAACCAAGGACATGATATTTAAACTCCCGTTTCTCATCAGCCACATAAGTTCCATTATGACACTTCTCGAAGGAGATGTAATACTAACAGGCACTCCCCAAGGTGTTGGCCCAGTAAAAATAGGTCAAAAGATAACTGCTGGCATAACCAACCTCGTGGATGTTCAGTTCAACGTCGAAAAACGAAAGAGCCAAGCAAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016787 GO:0016822 GO:0016823 GO:0018773 GO:0034545 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00350 ko01100 ko01120 map00350 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase

Protein Analysis

226

Amino Acids

24.11

Weight (kDa)

7.89

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAA_hydrolase	PF01557	15 - 216	3.3e-58	Fumarylacetoacetate (FAA) hydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16700 AT3G16700 AT3G16700 AT3G16700 AT4G15940
fragaria_vesca	FvH4_4g18580 FvH4_4g18580
malus_domestica	MD04G1020300.v1.1
prunus_persica	Prupe.1G124800_v2.0.a1 Prupe.1G125100_v2.0.a1
pyrus_communis	pycom10g01710 pycom10g01730 pycom16g13990
rosa_chinensis	RchiOBHm_Chr0c32g0501491 RchiOBHm_Chr4g0423181 RchiOBHm_Chr4g0423191
rosa_laevigata	RLG00000007578 RLG00000033195
rosa_multiflora	Rmu_sc0000580.1_g000006 Rmu_sc0003368.1_g000036 Rmu_sc0007269.1_g000013 Rmu_sc0007782.1_g000002 Rmu_sc0008829.1_g000004
rosa_roxburghii	Rroxscaffold_5G00365340 Rroxscaffold_5G00365370
rosa_rugosa	Rorug02G0398700 Rorug04G0185000 Rorug04G0185100
rosa_samantha	Rh2AG299600 Rh4AG244500 Rh4AG247800 Rh4BG249700 Rh4CG258800 Rh4DG244500 Rh5AG208600 Rh5AG217600 Rh5AG294800 Rh5BG129400 Rh5BG217400 Rh5DG211400 Rh6AG307700
rosa_wichuraiana	Rw4G021060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	409
AccII	CGCG	1 cut(s)	237
AciI	CCGC	6 cut(s)	35, 72, 156, 212, 245, 390
AcsI	RAATTY	2 cut(s)	278, 312
AcuI	CTGAAG	1 cut(s)	461
AcyI	GRCGYC	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	148, 317, 643
AloI	GAACNNNNNNTCC	2 cut(s)	623, 655
AluBI	AGCT	4 cut(s)	25, 208, 320, 356
AluI	AGCT	4 cut(s)	25, 208, 320, 356
AoxI	GGCC	1 cut(s)	580
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	278, 312
AspS9I	GGNCC	3 cut(s)	193, 348, 581
AsuC2I	CCSGG	1 cut(s)	419
AsuHPI	GGTGA	2 cut(s)	167, 226
AvaII	GGWCC	2 cut(s)	193, 348
BaeGI	GKGCMC	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	114
BauI	CACGAG	1 cut(s)	626
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	3 cut(s)	27, 83, 169
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BcnI	CCSGG	1 cut(s)	419
BfmI	CTRYAG	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	326
BisI	GCNGC	3 cut(s)	6, 72, 157
BlsI	GCNGC	3 cut(s)	7, 73, 158
Bme1390I	CCNGG	1 cut(s)	419
Bme18I	GGWCC	2 cut(s)	193, 348
BmgT120I	GGNCC	3 cut(s)	193, 348, 581
BmiI	GGNNCC	2 cut(s)	111, 411
BmrFI	CCNGG	1 cut(s)	419
BmrI	ACTGGG	1 cut(s)	578
BmuI	ACTGGG	1 cut(s)	578
BpiI	GAAGAC	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	6 cut(s)	105, 258, 344, 399, 477, 571
BsaXI	ACNNNNNCTCC	2 cut(s)	550, 580
Bse1I	ACTGG	1 cut(s)	584
BseDI	CCNNGG	6 cut(s)	105, 258, 344, 399, 477, 571
BseGI	GGATG	2 cut(s)	427, 637
BseNI	ACTGG	1 cut(s)	584
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	582
BshNI	GGYRCC	1 cut(s)	409
BsiEI	CGRYCG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	2 cut(s)	86, 155
BsmFI	GGGAC	2 cut(s)	86, 155
BsnI	GGCC	1 cut(s)	582
Bsp1286I	GDGCHC	2 cut(s)	41, 114
Bsp143I	GATC	2 cut(s)	45, 162
Bsp19I	CCATGG	2 cut(s)	258, 344
Bsp68I	TCGCGA	1 cut(s)	237
BspACI	CCGC	6 cut(s)	35, 72, 156, 212, 245, 390
BspANI	GGCC	1 cut(s)	582
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	2 cut(s)	111, 411
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	409
BsrI	ACTGG	1 cut(s)	584
BssECI	CCNNGG	6 cut(s)	105, 258, 344, 399, 477, 571
BssMI	GATC	2 cut(s)	45, 162
BssNI	GRCGYC	1 cut(s)	134
BssSI	CACGAG	1 cut(s)	626
BssT1I	CCWWGG	6 cut(s)	105, 258, 344, 399, 477, 571
Bst2BI	CACGAG	1 cut(s)	626
BstACI	GRCGYC	1 cut(s)	134
BstC8I	GCNNGC	5 cut(s)	33, 37, 210, 235, 613
BstDEI	CTNAG	3 cut(s)	42, 327, 357
BstDSI	CCRYGG	2 cut(s)	258, 344
BstF5I	GGATG	2 cut(s)	427, 637
BstFNI	CGCG	1 cut(s)	237
BstKTI	GATC	2 cut(s)	48, 165
BstMBI	GATC	2 cut(s)	45, 162
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 77, 332
BstSCI	CCNGG	1 cut(s)	417
BstSFI	CTRYAG	1 cut(s)	333
BstSLI	GKGCMC	1 cut(s)	41
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	332
BstXI	CCANNNNNNTGG	4 cut(s)	259, 406, 578, 628
BsuRI	GGCC	1 cut(s)	582
BtgI	CCRYGG	2 cut(s)	258, 344
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	427, 637
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	392
BtuMI	TCGCGA	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	5 cut(s)	33, 37, 210, 235, 613
Cfr13I	GGNCC	3 cut(s)	193, 348, 581
CviAII	CATG	4 cut(s)	197, 259, 345, 484
DdeI	CTNAG	3 cut(s)	42, 327, 357
DpnI	GATC	2 cut(s)	47, 164
DpnII	GATC	2 cut(s)	45, 162
DraI	TTTAAA	1 cut(s)	493
Eco130I	CCWWGG	6 cut(s)	105, 258, 344, 399, 477, 571
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	2 cut(s)	193, 348
Eco57I	CTGAAG	1 cut(s)	461
EcoT14I	CCWWGG	6 cut(s)	105, 258, 344, 399, 477, 571
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	6 cut(s)	105, 258, 344, 399, 477, 571
FaeI	CATG	4 cut(s)	200, 262, 348, 487
FaqI	GGGAC	2 cut(s)	86, 155
FatI	CATG	4 cut(s)	196, 258, 344, 483
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	3 cut(s)	6, 72, 157
FokI	GGATG	2 cut(s)	434, 644
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	3 cut(s)	6, 72, 157
GluI	GCNGC	3 cut(s)	6, 72, 157
HaeIII	GGCC	1 cut(s)	582
HapII	CCGG	1 cut(s)	419
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	4 cut(s)	200, 262, 348, 487
HindIII	AAGCTT	2 cut(s)	23, 318
HinfI	GANTC	1 cut(s)	54
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	2 cut(s)	167, 226
Hpy188I	TCNGA	1 cut(s)	53
Hpy188III	TCNNGA	4 cut(s)	236, 293, 539, 675
Hpy99I	CGWCG	6 cut(s)	13, 53, 136, 139, 272, 650
HpyAV	CCTTC	4 cut(s)	223, 382, 436, 536
HpyCH4IV	ACGT	3 cut(s)	134, 267, 645
HpyCH4V	TGCA	3 cut(s)	31, 284, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 77, 332
HpyF3I	CTNAG	3 cut(s)	42, 327, 357
HpySE526I	ACGT	3 cut(s)	134, 267, 645
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	4 cut(s)	200, 262, 348, 487
Kzo9I	GATC	2 cut(s)	45, 162
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	1 cut(s)	17
MaeII	ACGT	3 cut(s)	134, 267, 645
MalI	GATC	2 cut(s)	47, 164
MboI	GATC	2 cut(s)	45, 162
MboII	GAAGA	2 cut(s)	160, 332
MhlI	GDGCHC	2 cut(s)	41, 114
MluCI	AATT	3 cut(s)	278, 312, 455
MlyI	GAGTC	1 cut(s)	63
MmeI	TCCRAC	2 cut(s)	31, 171
MnlI	CCTC	6 cut(s)	134, 183, 189, 193, 453, 635
MseI	TTAA	1 cut(s)	492
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	419
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	11, 77, 332
NciI	CCSGG	1 cut(s)	419
NcoI	CCATGG	2 cut(s)	258, 344
NdeII	GATC	2 cut(s)	45, 162
NlaIII	CATG	4 cut(s)	200, 262, 348, 487
NlaIV	GGNNCC	2 cut(s)	111, 411
NmeAIII	GCCGAG	1 cut(s)	69
NruI	TCGCGA	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PflFI	GACNNNGTC	1 cut(s)	136
PkrI	GCNGC	3 cut(s)	7, 73, 158
Ple19I	CGATCG	1 cut(s)	165
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	111, 411
PspPI	GGNCC	3 cut(s)	193, 348, 581
PstI	CTGCAG	1 cut(s)	337
PsyI	GACNNNGTC	1 cut(s)	136
PvuI	CGATCG	1 cut(s)	165
RruI	TCGCGA	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	3 cut(s)	6, 72, 157
Sau3AI	GATC	2 cut(s)	45, 162
Sau96I	GGNCC	3 cut(s)	193, 348, 581
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	2 cut(s)	41, 114
SfcI	CTRYAG	1 cut(s)	333
SinI	GGWCC	2 cut(s)	193, 348
SmiMI	CAYNNNNRTG	1 cut(s)	257
Sse9I	AATT	3 cut(s)	278, 312, 455
SsiI	CCGC	6 cut(s)	35, 72, 156, 212, 245, 390
StyD4I	CCNGG	1 cut(s)	417
StyI	CCWWGG	6 cut(s)	105, 258, 344, 399, 477, 571
TaiI	ACGT	3 cut(s)	137, 270, 648
TaqI	TCGA	3 cut(s)	165, 540, 648
TasI	AATT	3 cut(s)	278, 312, 455
TauI	GCSGC	2 cut(s)	74, 159
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	1 cut(s)	5
TspRI	CASTG	1 cut(s)	399
Tth111I	GACNNNGTC	1 cut(s)	136
VpaK11BI	GGWCC	2 cut(s)	193, 348
XapI	RAATTY	2 cut(s)	278, 312
ZraI	GACGTC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.