Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002999

Physical Location & Seq

Genomic Coordinates Forward (+)

14014399 .. 14015550

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGAGCCTTCAGCTCTCAAACTGGTAATGGTTCAAGGTCCACGGAAGGGCGAAACCCTAGAATTCGTACCCGGATCCAAGGTCCGAATCGGCCGCGTTGTTCGGGGCAACAACCTCCCGATCAAAGACTCCGGCATTTCCTCCAAGCACCTCTCCATCGAATCTGAATCAGGCAAATGGGTTCTCCGAGACCTCGACTCCTCAAACGGCACGGTTTTGAATGGGTCGGATATCCCCCCAAATACGCCCGTGGATCTCACCGACGGAGACGAAATCAAAATCGGTGAGTACACTTCCGTCGAGGTGAAGATCGCCGGCTACGAAGAGACACGGCTGAGACGGAACCCTAGGCGTGCGGCGGCCGCAGCGGAAGCTACTGCGGTGCCGGTTTCGGAGAGTCGGAGACGGAGAGGTAGGGTTGCGAAGGAGGGCGAGGAGAAAGCGGAGGTGGAGAGAGCGAATGTTGAGGAAATTGAGGTCGCAGGGAAACGAGGGAGGGGCCGACCGCCCAGAGCTAGGGTTTTGAAGAGTGAAGCTGCGGAGGAGAAGCCTGCGGAGGAAAACTTGGCACGGCAGGTGAGTACAAGGCAAACTCGGAGCTCCAGGATTGAGGAATTGGGGAAGATTCCAGAGAACTCTGGTGTAGATAGTGAAGGAGTGAACGTTGAGCCGAAAAGGACCCATGTCGGTGCAAGGAGGACGAAAAATGTACCGGAGGAGGTATCAGTGTGTGATCAGCTTGATGTTAAGGAGGAAGAGGCTTCGAATGGGCTGAATTTGGAGGAAGAGAGACATGAAGAGGCAGATAGAGAGTTTAATGTTAGAGGAGAGAGTGGCGAAAAGGGTAAATATGGAAGTGGGAGTGGTGAAAAGGGTGAGAAAGGAAGTGGAAGTGGTGAAATCGGTGTCAATGGAAGTGGGAGTGGTTCAGGTGTAAATGAGAGCTGTGACTCGGAGAAGATGACGCTTGGGGAGTGGTTTGATTTTTTGGAGAGGAATTTTCCACAACAGATCATTGATGAGACGGAGGAGGCAATTGCGGAAATGGCAGAGAAAGCTAAGCGAATTCAGGAGTACATTGTGCAGGAGAAGGAGAAGGCGAAAGTGCTTGTGGGCTACAAGGGGGGAGCTGGGACTTGTGTTTTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

384

Amino Acids

41.84

Weight (kDa)

5.27

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yop-YscD_cpl	PF16697	11 - 96	4.5e-10	Inner membrane component of T3SS, cytoplasmic domain
FHA	PF00498	28 - 95	1.1e-17	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14490
fragaria_vesca	FvH4_4g02980 FvH4_4g02980 FvH4_4g02980 FvH4_4g02980
malus_domestica	MD13G1205500.v1.1 MD16G1211500.v1.1
prunus_persica	Prupe.1G033600_v2.0.a1
pyrus_communis	pycom13g17820 pycom16g17730
rosa_chinensis	RchiOBHm_Chr4g0391131 RchiOBHm_Chr7g0211851 RchiOBHm_Chr7g0224291
rosa_laevigata	RLG00000009886
rosa_multiflora	Rmu_co8378449.1_g000001 Rmu_sc0001824.1_g000046 Rmu_sc0008872.1_g000006 Rmu_sc0009005.1_g000005 Rmu_sc0009448.1_g000001 Rmu_sc0028516.1_g000002 Rmu_sc0030074.1_g000001 Rmu_sc0032072.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247360 Rroxscaffold_5G00336920
rosa_rugosa	Rorug03G0334400
rosa_samantha	Rh4AG034800 Rh4BG030000 Rh4CG038600 Rh4DG032000 Rh4DG032700 Rh7AG262000 Rh7AG381100 Rh7BG255700 Rh7CG400500 Rh7DG268500 Rh7DG367500
rosa_wichuraiana	Rw4G002710 Rw7G031100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	565
Acc36I	ACCTGC	1 cut(s)	565
AccB1I	GGYRCC	1 cut(s)	382
AccII	CGCG	1 cut(s)	96
AclI	AACGTT	1 cut(s)	663
AclWI	GGATC	3 cut(s)	69, 82, 261
AcoI	YGGCCR	2 cut(s)	91, 360
AcsI	RAATTY	4 cut(s)	62, 775, 997, 1065
AfaI	GTAC	5 cut(s)	69, 290, 583, 711, 1076
AfiI	CCNNNNNNNGG	2 cut(s)	47, 516
AgsI	TTSAA	3 cut(s)	35, 220, 526
AjnI	CCWGG	1 cut(s)	602
AluBI	AGCT	9 cut(s)	14, 374, 515, 536, 600, 739, 945, 1058, 1130
AluI	AGCT	9 cut(s)	14, 374, 515, 536, 600, 739, 945, 1058, 1130
Alw21I	GWGCWC	1 cut(s)	602
Alw26I	GTCTC	7 cut(s)	183, 261, 320, 331, 397, 784, 1016
AlwI	GGATC	3 cut(s)	69, 82, 261
AoxI	GGCC	3 cut(s)	91, 360, 499
ApeKI	GCWGC	2 cut(s)	365, 536
ApoI	RAATTY	4 cut(s)	62, 775, 997, 1065
AspA2I	CCTAGG	1 cut(s)	347
AspS9I	GGNCC	4 cut(s)	38, 82, 499, 678
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	7 cut(s)	250, 296, 316, 589, 878, 887, 908
AsuII	TTCGAA	1 cut(s)	764
AvaII	GGWCC	3 cut(s)	38, 82, 678
AvrII	CCTAGG	1 cut(s)	347
BamHI	GGATCC	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	602
Bbv12I	GWGCWC	1 cut(s)	602
BbvI	GCAGC	2 cut(s)	377, 523
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	3 cut(s)	223, 347, 587
BciT130I	CCWGG	1 cut(s)	604
BclI	TGATCA	1 cut(s)	733
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	7 cut(s)	183, 261, 320, 331, 397, 784, 1016
BfaI	CTAG	3 cut(s)	59, 348, 516
BfuAI	ACCTGC	1 cut(s)	565
BisI	GCNGC	6 cut(s)	94, 357, 360, 363, 366, 537
BlnI	CCTAGG	1 cut(s)	347
BlpI	GCTNAGC	1 cut(s)	1059
BlsI	GCNGC	6 cut(s)	95, 358, 361, 364, 367, 538
Bme1390I	CCNGG	2 cut(s)	72, 604
Bme18I	GGWCC	3 cut(s)	38, 82, 678
BmgT120I	GGNCC	4 cut(s)	38, 82, 499, 678
BmiI	GGNNCC	6 cut(s)	6, 76, 344, 384, 500, 680
BmrFI	CCNGG	2 cut(s)	72, 604
BoxI	GACNNNNGTC	1 cut(s)	683
BpmI	CTGGAG	1 cut(s)	586
Bpu1102I	GCTNAGC	1 cut(s)	1059
Bpu14I	TTCGAA	1 cut(s)	764
BpuMI	CCSGG	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	183
BsaJI	CCNNGG	4 cut(s)	41, 78, 249, 347
BsaWI	WCCGGW	1 cut(s)	712
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 648, 678
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 516
Bse118I	RCCGGY	2 cut(s)	314, 385
Bse1I	ACTGG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	604
BseDI	CCNNGG	4 cut(s)	41, 78, 249, 347
BseLI	CCNNNNNNNGG	2 cut(s)	47, 516
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	6 cut(s)	190, 449, 557, 731, 840, 1043
BseX3I	CGGCCG	2 cut(s)	91, 360
BseXI	GCAGC	2 cut(s)	377, 523
BseYI	CCCAGC	1 cut(s)	1130
BsgI	GTGCAG	1 cut(s)	1103
Bsh1236I	CGCG	1 cut(s)	96
Bsh1285I	CGRYCG	3 cut(s)	94, 363, 506
BshFI	GGCC	3 cut(s)	93, 362, 501
BshNI	GGYRCC	1 cut(s)	382
BsiEI	CGRYCG	3 cut(s)	94, 363, 506
BsiHKAI	GWGCWC	1 cut(s)	602
BsiSI	CCGG	5 cut(s)	72, 132, 315, 386, 713
BslFI	GGGAC	1 cut(s)	1147
BslI	CCNNNNNNNGG	2 cut(s)	47, 516
BsmAI	GTCTC	7 cut(s)	183, 261, 320, 331, 397, 784, 1016
BsmBI	CGTCTC	4 cut(s)	261, 331, 397, 1016
BsmFI	GGGAC	1 cut(s)	1147
BsnI	GGCC	3 cut(s)	93, 362, 501
Bso31I	GGTCTC	1 cut(s)	183
Bsp119I	TTCGAA	1 cut(s)	764
Bsp1286I	GDGCHC	1 cut(s)	602
Bsp143I	GATC	6 cut(s)	74, 120, 253, 309, 733, 1011
Bsp1720I	GCTNAGC	1 cut(s)	1059
BspANI	GGCC	3 cut(s)	93, 362, 501
BspCNI	CTCAG	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	6 cut(s)	6, 76, 344, 384, 500, 680
BspMI	ACCTGC	1 cut(s)	565
BspPI	GGATC	3 cut(s)	69, 82, 261
BspT104I	TTCGAA	1 cut(s)	764
BspT107I	GGYRCC	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	183
BsrFI	RCCGGY	2 cut(s)	314, 385
BsrI	ACTGG	1 cut(s)	27
BssAI	RCCGGY	2 cut(s)	314, 385
BssECI	CCNNGG	4 cut(s)	41, 78, 249, 347
BssMI	GATC	6 cut(s)	74, 120, 253, 309, 733, 1011
BssT1I	CCWWGG	2 cut(s)	78, 347
Bst2UI	CCWGG	1 cut(s)	604
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	5 cut(s)	318, 521, 750, 780, 792
BstBI	TTCGAA	1 cut(s)	764
BstC8I	GCNNGC	3 cut(s)	316, 354, 552
BstDEI	CTNAG	2 cut(s)	335, 1059
BstDSI	CCRYGG	2 cut(s)	41, 249
BstFNI	CGCG	1 cut(s)	96
BstKTI	GATC	6 cut(s)	77, 123, 256, 312, 736, 1014
BstMAI	GTCTC	7 cut(s)	183, 261, 320, 331, 397, 784, 1016
BstMBI	GATC	6 cut(s)	74, 120, 253, 309, 733, 1011
BstMCI	CGRYCG	3 cut(s)	94, 363, 506
BstMWI	GCNNNNNNNGC	5 cut(s)	362, 365, 371, 1046, 1055
BstNI	CCWGG	1 cut(s)	604
BstPAI	GACNNNNGTC	1 cut(s)	683
BstSCI	CCNGG	2 cut(s)	70, 602
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	377, 523
BstX2I	RGATCY	2 cut(s)	74, 253
BstYI	RGATCY	2 cut(s)	74, 253
BstZI	CGGCCG	2 cut(s)	91, 360
BsuRI	GGCC	3 cut(s)	93, 362, 501
BtgI	CCRYGG	2 cut(s)	41, 249
BtsIMutI	CAGTG	1 cut(s)	732
BveI	ACCTGC	1 cut(s)	565
Cac8I	GCNNGC	3 cut(s)	316, 354, 552
CciNI	GCGGCCGC	1 cut(s)	360
Cfr10I	RCCGGY	2 cut(s)	314, 385
Cfr13I	GGNCC	4 cut(s)	38, 82, 499, 678
CseI	GACGC	1 cut(s)	973
Csp6I	GTAC	5 cut(s)	68, 289, 582, 710, 1075
CspCI	CAANNNNNGTGG	2 cut(s)	898, 933
CviAII	CATG	2 cut(s)	683, 794
CviQI	GTAC	5 cut(s)	68, 289, 582, 710, 1075
DdeI	CTNAG	2 cut(s)	335, 1059
DpnI	GATC	6 cut(s)	76, 122, 255, 311, 735, 1013
DpnII	GATC	6 cut(s)	74, 120, 253, 309, 733, 1011
EaeI	YGGCCR	2 cut(s)	91, 360
EagI	CGGCCG	2 cut(s)	91, 360
Eam1104I	CTCTTC	5 cut(s)	318, 521, 750, 780, 792
EarI	CTCTTC	5 cut(s)	318, 521, 750, 780, 792
Ecl136II	GAGCTC	1 cut(s)	600
EclXI	CGGCCG	2 cut(s)	91, 360
Eco130I	CCWWGG	2 cut(s)	78, 347
Eco24I	GRGCYC	1 cut(s)	602
Eco31I	GGTCTC	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	232
Eco47I	GGWCC	3 cut(s)	38, 82, 678
Eco52I	CGGCCG	2 cut(s)	91, 360
Eco53kI	GAGCTC	1 cut(s)	600
EcoICRI	GAGCTC	1 cut(s)	600
EcoO109I	RGGNCCY	1 cut(s)	678
EcoRI	GAATTC	2 cut(s)	62, 1065
EcoRII	CCWGG	1 cut(s)	602
EcoRV	GATATC	1 cut(s)	232
EcoT14I	CCWWGG	2 cut(s)	78, 347
EcoT38I	GRGCYC	1 cut(s)	602
ErhI	CCWWGG	2 cut(s)	78, 347
Esp3I	CGTCTC	4 cut(s)	261, 331, 397, 1016
FaeI	CATG	2 cut(s)	686, 797
FaiI	YATR	3 cut(s)	684, 795, 852
FaqI	GGGAC	1 cut(s)	1147
FatI	CATG	2 cut(s)	682, 793
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	6 cut(s)	94, 357, 360, 363, 366, 537
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	6 cut(s)	94, 357, 360, 363, 366, 537
FspBI	CTAG	3 cut(s)	59, 348, 516
GluI	GCNGC	6 cut(s)	94, 357, 360, 363, 366, 537
GsaI	CCCAGC	1 cut(s)	1134
GsuI	CTGGAG	1 cut(s)	586
HaeIII	GGCC	3 cut(s)	93, 362, 501
HapII	CCGG	5 cut(s)	72, 132, 315, 386, 713
HgaI	GACGC	1 cut(s)	973
Hin1II	CATG	2 cut(s)	686, 797
HinfI	GANTC	8 cut(s)	87, 128, 161, 167, 197, 397, 625, 950
HpaII	CCGG	5 cut(s)	72, 132, 315, 386, 713
HphI	GGTGA	7 cut(s)	250, 296, 316, 589, 878, 887, 908
Hpy166II	GTNNAC	3 cut(s)	41, 291, 661
Hpy188I	TCNGA	8 cut(s)	86, 166, 188, 229, 394, 402, 597, 955
Hpy188III	TCNNGA	3 cut(s)	118, 629, 1070
Hpy8I	GTNNAC	3 cut(s)	41, 291, 661
Hpy99I	CGWCG	2 cut(s)	266, 302
HpyAV	CCTTC	6 cut(s)	18, 40, 418, 647, 1084, 1090
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	2 cut(s)	692, 1084
HpyF10VI	GCNNNNNNNGC	5 cut(s)	362, 365, 371, 1046, 1055
HpyF3I	CTNAG	2 cut(s)	335, 1059
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	2 cut(s)	686, 797
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	6 cut(s)	74, 120, 253, 309, 733, 1011
LmnI	GCTCC	4 cut(s)	4, 597, 605, 1127
Lsp1109I	GCAGC	2 cut(s)	377, 523
MaeI	CTAG	3 cut(s)	59, 348, 516
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	1 cut(s)	947
MalI	GATC	6 cut(s)	76, 122, 255, 311, 735, 1013
MboI	GATC	6 cut(s)	74, 120, 253, 309, 733, 1011
MboII	GAAGA	8 cut(s)	319, 335, 538, 634, 767, 797, 809, 970
MfeI	CAATTG	1 cut(s)	1035
MflI	RGATCY	2 cut(s)	74, 253
MhlI	GDGCHC	1 cut(s)	602
MluCI	AATT	7 cut(s)	62, 471, 614, 775, 997, 1035, 1065
MlyI	GAGTC	4 cut(s)	122, 191, 406, 944
MmeI	TCCRAC	2 cut(s)	207, 380
MroNI	GCCGGC	1 cut(s)	314
MseI	TTAA	2 cut(s)	747, 816
MslI	CAYNNNNRTG	1 cut(s)	687
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	5 cut(s)	72, 132, 315, 386, 713
MspR9I	CCNGG	2 cut(s)	72, 604
MunI	CAATTG	1 cut(s)	1035
MvaI	CCWGG	1 cut(s)	604
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	5 cut(s)	362, 365, 371, 1046, 1055
NaeI	GCCGGC	1 cut(s)	316
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	6 cut(s)	74, 120, 253, 309, 733, 1011
NgoMIV	GCCGGC	1 cut(s)	314
NlaIII	CATG	2 cut(s)	686, 797
NlaIV	GGNNCC	6 cut(s)	6, 76, 344, 384, 500, 680
NmuCI	GTSAC	1 cut(s)	947
NotI	GCGGCCGC	1 cut(s)	360
NspV	TTCGAA	1 cut(s)	764
PaqCI	CACCTGC	1 cut(s)	565
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PdiI	GCCGGC	1 cut(s)	316
PfeI	GAWTC	4 cut(s)	87, 161, 167, 625
PfoI	TCCNGGA	1 cut(s)	602
PkrI	GCNGC	6 cut(s)	95, 358, 361, 364, 367, 538
PleI	GAGTC	4 cut(s)	122, 191, 405, 944
PpsI	GAGTC	4 cut(s)	122, 191, 405, 944
PpuMI	RGGWCCY	1 cut(s)	678
PshAI	GACNNNNGTC	1 cut(s)	683
Psp124BI	GAGCTC	1 cut(s)	602
Psp1406I	AACGTT	1 cut(s)	663
Psp5II	RGGWCCY	1 cut(s)	678
Psp6I	CCWGG	1 cut(s)	602
PspFI	CCCAGC	1 cut(s)	1130
PspGI	CCWGG	1 cut(s)	602
PspN4I	GGNNCC	6 cut(s)	6, 76, 344, 384, 500, 680
PspPI	GGNCC	4 cut(s)	38, 82, 499, 678
PspPPI	RGGWCCY	1 cut(s)	678
PsuI	RGATCY	2 cut(s)	74, 253
RsaI	GTAC	5 cut(s)	69, 290, 583, 711, 1076
RsaNI	GTAC	5 cut(s)	68, 289, 582, 710, 1075
RseI	CAYNNNNRTG	1 cut(s)	687
SacI	GAGCTC	1 cut(s)	602
SaqAI	TTAA	2 cut(s)	747, 816
SatI	GCNGC	6 cut(s)	94, 357, 360, 363, 366, 537
Sau3AI	GATC	6 cut(s)	74, 120, 253, 309, 733, 1011
Sau96I	GGNCC	4 cut(s)	38, 82, 499, 678
SchI	GAGTC	4 cut(s)	122, 191, 406, 944
ScrFI	CCNGG	2 cut(s)	72, 604
SduI	GDGCHC	1 cut(s)	602
SfuI	TTCGAA	1 cut(s)	764
SinI	GGWCC	3 cut(s)	38, 82, 678
SmiMI	CAYNNNNRTG	1 cut(s)	687
Sse9I	AATT	7 cut(s)	62, 471, 614, 775, 997, 1035, 1065
SspMI	CTAG	3 cut(s)	59, 348, 516
SstI	GAGCTC	1 cut(s)	602
StyD4I	CCNGG	2 cut(s)	70, 602
StyI	CCWWGG	2 cut(s)	78, 347
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	4 cut(s)	159, 195, 300, 764
TasI	AATT	7 cut(s)	62, 471, 614, 775, 997, 1035, 1065
TatI	WGTACW	3 cut(s)	288, 581, 1074
TauI	GCSGC	4 cut(s)	96, 359, 362, 365
TfiI	GAWTC	4 cut(s)	87, 161, 167, 625
Tru1I	TTAA	2 cut(s)	747, 816
Tru9I	TTAA	2 cut(s)	747, 816
TscAI	CASTG	1 cut(s)	732
TseFI	GTSAC	1 cut(s)	947
TseI	GCWGC	2 cut(s)	365, 536
Tsp45I	GTSAC	1 cut(s)	947
TspDTI	ATGAA	1 cut(s)	810
TspGWI	ACGGA	6 cut(s)	58, 279, 286, 355, 421, 1040
TspRI	CASTG	1 cut(s)	732
VpaK11BI	GGWCC	3 cut(s)	38, 82, 678
XapI	RAATTY	4 cut(s)	62, 775, 997, 1065
XmaJI	CCTAGG	1 cut(s)	347
XspI	CTAG	3 cut(s)	59, 348, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.