pycom16g18260

Pre-mRNA-splicing factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
14854824 .. 14859300
4477 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1755 bp
ATGAAAGAAAATTTTGCAGTTGACAATTTCCCTTATGTAAATACTCGGTTTTATGAAATAATTGGTTTCGGTGTTCCTTTATTTTTCCAGAACGTTCTCCGCTGCTTTGCCGCTGCTCTTCCTGCATTCAACCATGGCTACTGCATCAGGGTGTGTGCAGCGGCTTTCAAATCAAGGGAGGATCATCGGAAGCAGATGGAATTGGAGGAAGCGCGTAAAGCTGGGCTAGCGCCAGCTGAAGTTGATGAGGATGGGAAAGAGATTAATCCTCATATTCCTCAATATATGTCAAATGCACCTTGGTATCTTAAGGCTAATCAACGAAGTTTGAAACATCAACGGAAATGGAAATCAGATCCAAATTATACAAAATCTTGGTACGACAGAGGTGCAAAGACTTTTCGGGCTGATAAATACCGGAAGGGAGCATGTGAAAACTGTGGGGCGATCACGCATACCACAAAGTTGTGCATGGAGAGGCCTAGAAAAAAAGGAGCAAGATGGACAGACATGCACATTGCACCTGATGAAAAAATAGAGAGTTTTGAGCTGGATTATGATGGAAAACGGGATAGATGGAATGGTTTTGATGCAGCAACTTATGCTTATATCATTGAGAGATACGAGGCAAGGGACGAGGCTAGAAGGAAATACCTGAAGGAACAGCAGATAAAAAAGTTGGAGGAGAAAAATAATAAGCAGAATGGGGAAGGGGAGGTTAGTGAAGATGATGAGGATGTCGATGCTCTGAAGGTAGATGAGGCCAAGGTTGACGAAAGCAAACAGATGGATTTTGCAAAGGTTGAGAAGCGTGTTCGCACGACTGGTGGTGGAAGCACTGGAACTGTGAGAAATTTGCGCATTCGGGAGGACACAGCTAAATATCTTTTGAATCTTGATGTCAATTCTGCTTATTATGATCCCAAAACTCGGTCCATGCGTGAAGATCCTCTTCCTGATGCTAACCCGAATGAGAAGTTTTATGGAGGAGATAACAAATATAGAGCGAGTGGGCAAGCTCTAGAGTTCAAGCAGCTCAATATTCATGCATGGGAGGCATTTGAAAAAGGGCAAGACATTCACATGCAAGCTGCTCCATCTCAAGCAGAATTACTGTATAAGAACTTTAAGGTCATTAAGGAGAGGTTGATGTCACAAATGAAAGATGCCATTATGGAGAAGTATGGCAATGCTGCAACTGAAGAGCAACTTCCGAAGGAGCTTCTTTTGGGACAGTCTGAGAACCAAGTTGAATATGATCGTGCTGGCAGAGTTGTAAAAGGCATGGAGACATCCCTTCCAAAGAGTAAATATGAAGAGGATGTTTACATCAATAACCACACAAGTATTTGGGGATCATGGTGGAAGGATCACCAATGGGGATACAAGTGTTGTAAGCAAACAATTCGGAACAGTTATTGCACTGGTGTAGCTGGAGTTGAGGCTGCCGAGGCAGCTGCAGACCTAATGAATGTGAACATTGCCCGCAAAGTAGCCTCTAAAGAGATGCCTGCTCCAACAGAAGAAAAAAGGGTTGCTACCTGGGGAACTGATATTCCCGACGACTTGGTCCTTGACCAGAAAAAACTTGATGATGCTCTTAAGAAGGAGGATGAGAGAAAGACGGAAGAAAAGGATGAAAGAAAGCGCAAATATAATGTTAAGTGGGACGATGAGGTTACTCCCGAGGAGATGGAGGCATATCGAATGAAAAAGATTCACCATGACGATCCCATGAAAGATTTCCTGCACTAA

Protein Analysis

585

Amino Acids

67.87

Weight (kDa)

6.42

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Slu7 PF11708 184 - 453 1.4e-93 Pre-mRNA splicing Prp18-interacting factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1568
Acc16I TGCGCA 1 cut(s) 860
AccII CGCG 1 cut(s) 214
AciI CCGC 4 cut(s) 100, 111, 161, 1486
AclI AACGTT 1 cut(s) 93
AclWI GGATC 7 cut(s) 189, 350, 914, 941, 1363, 1377, 1724
AcsI RAATTY 2 cut(s) 10, 853
AcuI CTGAAG 4 cut(s) 258, 677, 770, 1221
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 930
AflII CTTAAG 2 cut(s) 308, 1601
AgsI TTSAA 7 cut(s) 130, 169, 331, 892, 1030, 1064, 1253
AjnI CCWGG 1 cut(s) 1541
AloI GAACNNNNNNTCC 2 cut(s) 1540, 1572
Alw26I GTCTC 1 cut(s) 1283
AlwI GGATC 7 cut(s) 189, 350, 914, 941, 1363, 1377, 1724
Ama87I CYCGRG 1 cut(s) 1685
AoxI GGCC 2 cut(s) 479, 762
ApoI RAATTY 2 cut(s) 10, 853
AseI ATTAAT 1 cut(s) 264
Asp700I GAANNNNTTC 1 cut(s) 1742
AspLEI GCGC 4 cut(s) 214, 232, 861, 1650
AspS9I GGNCC 2 cut(s) 933, 1570
AsuHPI GGTGA 2 cut(s) 1364, 1712
AsuNHI GCTAGC 1 cut(s) 226
AvaI CYCGRG 1 cut(s) 1685
AvaII GGWCC 2 cut(s) 933, 1570
BaeI ACNNNNGTAYC 4 cut(s) 287, 320, 1375, 1408
BccI CCATC 8 cut(s) 190, 245, 495, 554, 570, 781, 1105, 1687
BcgI CGANNNNNNTGC 6 cut(s) 371, 405, 1388, 1422, 1439, 1473
BciT130I CCWGG 1 cut(s) 1543
BciVI GTATCC 1 cut(s) 1376
BcoDI GTCTC 1 cut(s) 1283
BfaI CTAG 4 cut(s) 227, 483, 642, 1022
BfmI CTRYAG 1 cut(s) 1458
BfoI RGCGCY 1 cut(s) 233
BfrI CTTAAG 2 cut(s) 308, 1601
BfuI GTATCC 1 cut(s) 1376
Bme1390I CCNGG 1 cut(s) 1543
Bme18I GGWCC 2 cut(s) 933, 1570
BmeT110I CYCGRG 1 cut(s) 1685
BmgT120I GGNCC 2 cut(s) 933, 1570
BmrFI CCNGG 1 cut(s) 1543
BmsI GCATC 7 cut(s) 153, 580, 733, 949, 1156, 1497, 1585
BmtI GCTAGC 1 cut(s) 230
BpmI CTGGAG 1 cut(s) 1455
BpuEI CTTGAG 1 cut(s) 1086
BsaJI CCNNGG 6 cut(s) 133, 299, 765, 1449, 1542, 1686
BsaWI WCCGGW 1 cut(s) 417
Bsc4I CCNNNNNNNGG 1 cut(s) 930
Bse1I ACTGG 3 cut(s) 829, 844, 1429
Bse3DI GCAATG 3 cut(s) 516, 1195, 1479
BseBI CCWGG 1 cut(s) 1543
BseDI CCNNGG 6 cut(s) 133, 299, 765, 1449, 1542, 1686
BseGI GGATG 6 cut(s) 256, 742, 1292, 1327, 1618, 1642
BseLI CCNNNNNNNGG 1 cut(s) 930
BseMI GCAATG 3 cut(s) 516, 1195, 1479
BseMII CTCAG 1 cut(s) 1230
BseNI ACTGG 3 cut(s) 829, 844, 1429
BseRI GAGGAG 3 cut(s) 698, 1002, 1703
BseYI CCCAGC 1 cut(s) 221
BsgI GTGCAG 2 cut(s) 177, 1733
Bsh1236I CGCG 1 cut(s) 214
BshFI GGCC 2 cut(s) 481, 764
BsiHKCI CYCGRG 1 cut(s) 1685
BsiSI CCGG 1 cut(s) 418
BslFI GGGAC 3 cut(s) 647, 1245, 1682
BslI CCNNNNNNNGG 1 cut(s) 930
BsmAI GTCTC 1 cut(s) 1283
BsmFI GGGAC 3 cut(s) 647, 1245, 1682
BsmI GAATGC 2 cut(s) 125, 861
BsnI GGCC 2 cut(s) 481, 764
BsoBI CYCGRG 1 cut(s) 1685
Bsp143I GATC 9 cut(s) 181, 355, 447, 919, 946, 1258, 1355, 1369, 1729
Bsp19I CCATGG 1 cut(s) 133
BspACI CCGC 4 cut(s) 100, 111, 161, 1486
BspANI GGCC 2 cut(s) 481, 764
BspCNI CTCAG 1 cut(s) 1231
BspFNI CGCG 1 cut(s) 214
BspMAI CTGCAG 1 cut(s) 1462
BspOI GCTAGC 1 cut(s) 230
BspPI GGATC 7 cut(s) 189, 350, 914, 941, 1363, 1377, 1724
BspQI GCTCTTC 2 cut(s) 123, 1197
BspTI CTTAAG 2 cut(s) 308, 1601
BsrDI GCAATG 3 cut(s) 516, 1195, 1479
BsrI ACTGG 3 cut(s) 829, 844, 1429
BssECI CCNNGG 6 cut(s) 133, 299, 765, 1449, 1542, 1686
BssMI GATC 9 cut(s) 181, 355, 447, 919, 946, 1258, 1355, 1369, 1729
BssT1I CCWWGG 3 cut(s) 133, 299, 765
Bst2UI CCWGG 1 cut(s) 1543
Bst4CI ACNGT 5 cut(s) 440, 847, 1116, 1236, 1415
Bst6I CTCTTC 4 cut(s) 123, 957, 1197, 1311
BstAFI CTTAAG 2 cut(s) 308, 1601
BstAPI GCANNNNNTGC 1 cut(s) 602
BstC8I GCNNGC 7 cut(s) 228, 234, 1017, 1089, 1267, 1486, 1512
BstDEI CTNAG 1 cut(s) 1239
BstDSI CCRYGG 1 cut(s) 133
BstF5I GGATG 6 cut(s) 256, 742, 1292, 1327, 1618, 1642
BstFNI CGCG 1 cut(s) 214
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 4 cut(s) 214, 232, 861, 1650
BstKTI GATC 9 cut(s) 184, 358, 450, 922, 949, 1261, 1358, 1372, 1732
BstMAI GTCTC 1 cut(s) 1283
BstMBI GATC 9 cut(s) 181, 355, 447, 919, 946, 1258, 1355, 1369, 1729
BstMWI GCNNNNNNNGC 7 cut(s) 122, 218, 227, 602, 1055, 1451, 1454
BstNI CCWGG 1 cut(s) 1543
BstNSI RCATGY 3 cut(s) 432, 514, 1087
BstSCI CCNGG 1 cut(s) 1541
BstSFI CTRYAG 1 cut(s) 1458
BstUI CGCG 1 cut(s) 214
BstX2I RGATCY 2 cut(s) 355, 946
BstYI RGATCY 2 cut(s) 355, 946
BsuI GTATCC 1 cut(s) 1376
BsuRI GGCC 2 cut(s) 481, 764
BtgI CCRYGG 1 cut(s) 133
BtsCI GGATG 6 cut(s) 256, 742, 1292, 1327, 1618, 1642
BtsIMutI CAGTG 2 cut(s) 837, 1422
Cac8I GCNNGC 7 cut(s) 228, 234, 1017, 1089, 1267, 1486, 1512
CfoI GCGC 4 cut(s) 214, 232, 861, 1650
Cfr13I GGNCC 2 cut(s) 933, 1570
Csp6I GTAC 1 cut(s) 379
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 1 cut(s) 1239
DpnI GATC 9 cut(s) 183, 357, 449, 921, 948, 1260, 1357, 1371, 1731
DpnII GATC 9 cut(s) 181, 355, 447, 919, 946, 1258, 1355, 1369, 1729
DrdI GACNNNNNNGTC 1 cut(s) 1568
DseDI GACNNNNNNGTC 1 cut(s) 1568
Eam1104I CTCTTC 4 cut(s) 123, 957, 1197, 1311
EarI CTCTTC 4 cut(s) 123, 957, 1197, 1311
Eco130I CCWWGG 3 cut(s) 133, 299, 765
Eco147I AGGCCT 1 cut(s) 481
Eco47I GGWCC 2 cut(s) 933, 1570
Eco57I CTGAAG 4 cut(s) 258, 677, 770, 1221
Eco88I CYCGRG 1 cut(s) 1685
EcoRII CCWGG 1 cut(s) 1541
EcoT14I CCWWGG 3 cut(s) 133, 299, 765
EcoT22I ATGCAT 1 cut(s) 1051
ErhI CCWWGG 3 cut(s) 133, 299, 765
FalI AAGNNNNNCTT 4 cut(s) 936, 968, 1194, 1226
FaqI GGGAC 3 cut(s) 647, 1245, 1682
FauI CCCGC 1 cut(s) 1493
FokI GGATG 6 cut(s) 263, 749, 1279, 1334, 1625, 1649
FspBI CTAG 4 cut(s) 227, 483, 642, 1022
FspI TGCGCA 1 cut(s) 860
GlaI GCGC 4 cut(s) 213, 231, 860, 1649
GsaI CCCAGC 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 1455
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 2 cut(s) 481, 764
HapII CCGG 1 cut(s) 418
HhaI GCGC 4 cut(s) 214, 232, 861, 1650
Hin6I GCGC 4 cut(s) 212, 230, 859, 1648
HinP1I GCGC 4 cut(s) 212, 230, 859, 1648
HincII GTYRAC 2 cut(s) 22, 772
HindII GTYRAC 2 cut(s) 22, 772
HinfI GANTC 2 cut(s) 892, 1717
HpaII CCGG 1 cut(s) 418
HphI GGTGA 2 cut(s) 1364, 1712
Hpy166II GTNNAC 4 cut(s) 22, 772, 1327, 1477
Hpy188I TCNGA 6 cut(s) 189, 355, 750, 1215, 1240, 1410
Hpy188III TCNNGA 7 cut(s) 88, 866, 896, 956, 1022, 1559, 1685
Hpy8I GTNNAC 4 cut(s) 22, 772, 1327, 1477
Hpy99I CGWCG 1 cut(s) 1565
HpyAV CCTTC 9 cut(s) 415, 639, 652, 704, 745, 1210, 1307, 1360, 1600
HpyCH4III ACNGT 5 cut(s) 440, 847, 1116, 1236, 1415
HpyCH4IV ACGT 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 7 cut(s) 122, 218, 227, 602, 1055, 1451, 1454
HpyF3I CTNAG 1 cut(s) 1239
HpySE526I ACGT 1 cut(s) 93
HspAI GCGC 4 cut(s) 212, 230, 859, 1648
Kzo9I GATC 9 cut(s) 181, 355, 447, 919, 946, 1258, 1355, 1369, 1729
LguI GCTCTTC 2 cut(s) 123, 1197
LmnI GCTCC 5 cut(s) 425, 494, 1099, 1219, 1519
LweI GCATC 7 cut(s) 153, 580, 733, 949, 1156, 1497, 1585
MaeI CTAG 4 cut(s) 227, 483, 642, 1022
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 2 cut(s) 1152, 1678
MalI GATC 9 cut(s) 183, 357, 449, 921, 948, 1260, 1357, 1371, 1731
MboI GATC 9 cut(s) 181, 355, 447, 919, 946, 1258, 1355, 1369, 1729
MboII GAAGA 8 cut(s) 110, 737, 944, 956, 1214, 1328, 1535, 1640
MflI RGATCY 2 cut(s) 355, 946
MluCI AATT 9 cut(s) 10, 25, 60, 200, 361, 853, 904, 1109, 1404
MmeI TCCRAC 2 cut(s) 660, 1541
Mph1103I ATGCAT 1 cut(s) 1051
MroXI GAANNNNTTC 1 cut(s) 1742
MseI TTAA 6 cut(s) 264, 309, 1128, 1137, 1602, 1662
MslI CAYNNNNRTG 2 cut(s) 149, 1082
MspA1I CMGCKG 5 cut(s) 102, 113, 161, 236, 1457
MspCI CTTAAG 2 cut(s) 308, 1601
MspI CCGG 1 cut(s) 418
MspR9I CCNGG 1 cut(s) 1543
Mva1269I GAATGC 2 cut(s) 125, 861
MvaI CCWGG 1 cut(s) 1543
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 7 cut(s) 122, 218, 227, 602, 1055, 1451, 1454
NcoI CCATGG 1 cut(s) 133
NdeII GATC 9 cut(s) 181, 355, 447, 919, 946, 1258, 1355, 1369, 1729
NheI GCTAGC 1 cut(s) 226
NmeAIII GCCGAG 1 cut(s) 1474
NmuCI GTSAC 1 cut(s) 1152
NsbI TGCGCA 1 cut(s) 860
NsiI ATGCAT 1 cut(s) 1051
NspI RCATGY 3 cut(s) 432, 514, 1087
PceI AGGCCT 1 cut(s) 481
PciSI GCTCTTC 2 cut(s) 123, 1197
PcsI WCGNNNNNNNCGW 1 cut(s) 937
PctI GAATGC 2 cut(s) 125, 861
PdmI GAANNNNTTC 1 cut(s) 1742
PfeI GAWTC 2 cut(s) 892, 1717
PflFI GACNNNGTC 1 cut(s) 1568
PshBI ATTAAT 1 cut(s) 264
Psp1406I AACGTT 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 1541
PspFI CCCAGC 1 cut(s) 221
PspGI CCWGG 1 cut(s) 1541
PspPI GGNCC 2 cut(s) 933, 1570
PstI CTGCAG 1 cut(s) 1462
PsuI RGATCY 2 cut(s) 355, 946
PsyI GACNNNGTC 1 cut(s) 1568
PvuII CAGCTG 2 cut(s) 236, 1457
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
RseI CAYNNNNRTG 2 cut(s) 149, 1082
SapI GCTCTTC 2 cut(s) 123, 1197
SaqAI TTAA 6 cut(s) 264, 309, 1128, 1137, 1602, 1662
Sau3AI GATC 9 cut(s) 181, 355, 447, 919, 946, 1258, 1355, 1369, 1729
Sau96I GGNCC 2 cut(s) 933, 1570
ScrFI CCNGG 1 cut(s) 1543
SfaNI GCATC 7 cut(s) 153, 580, 733, 949, 1156, 1497, 1585
SfcI CTRYAG 1 cut(s) 1458
SinI GGWCC 2 cut(s) 933, 1570
SmiMI CAYNNNNRTG 2 cut(s) 149, 1082
SmlI CTYRAG 3 cut(s) 308, 1101, 1601
SmoI CTYRAG 3 cut(s) 308, 1101, 1601
Sse9I AATT 9 cut(s) 10, 25, 60, 200, 361, 853, 904, 1109, 1404
SseBI AGGCCT 1 cut(s) 481
SsiI CCGC 4 cut(s) 100, 111, 161, 1486
SspI AATATT 1 cut(s) 1042
SspMI CTAG 4 cut(s) 227, 483, 642, 1022
StuI AGGCCT 1 cut(s) 481
StyD4I CCNGG 1 cut(s) 1541
StyI CCWWGG 3 cut(s) 133, 299, 765
TaaI ACNGT 5 cut(s) 440, 847, 1116, 1236, 1415
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 741, 1705
TaqII GACCGA 1 cut(s) 921
TasI AATT 9 cut(s) 10, 25, 60, 200, 361, 853, 904, 1109, 1404
TauI GCSGC 2 cut(s) 113, 164
TfiI GAWTC 2 cut(s) 892, 1717
Tru1I TTAA 6 cut(s) 264, 309, 1128, 1137, 1602, 1662
Tru9I TTAA 6 cut(s) 264, 309, 1128, 1137, 1602, 1662
TscAI CASTG 2 cut(s) 844, 1429
TseFI GTSAC 1 cut(s) 1152
Tsp45I GTSAC 1 cut(s) 1152
TspGWI ACGGA 2 cut(s) 355, 1640
TspRI CASTG 2 cut(s) 844, 1429
Tth111I GACNNNGTC 1 cut(s) 1568
Vha464I CTTAAG 2 cut(s) 308, 1601
VpaK11BI GGWCC 2 cut(s) 933, 1570
VspI ATTAAT 1 cut(s) 264
XapI RAATTY 2 cut(s) 10, 853
XbaI TCTAGA 1 cut(s) 1021
XceI RCATGY 3 cut(s) 432, 514, 1087
XmnI GAANNNNTTC 1 cut(s) 1742
XspI CTAG 4 cut(s) 227, 483, 642, 1022
Zsp2I ATGCAT 1 cut(s) 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.