pycom17g07020

Ribosomal RNA-processing protein 7 (RRP7)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0002008
Physical Location & Seq
Forward (+)
5055634 .. 5058586
2953 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1065 bp
ATGAAAAGGATGGGAATGAAGGACAAGAAGAAGACCCATAAGAACAAGAAGGTTGCCCAGCCAAATTTGGAGCTTGTTGAAAAGGATAAAAAATTAGGATCTGCAGAGATTAGAAAGAGAAAAAGGGCAAAGGAAAGCGATGCTGATTCTCGAAGGGTTGTTCAAGTCTCTATTGAAGTAGATAATTCAGCCAAACCAGCCAAAGATAAGAAAAAGGCAAAACTAACGAATAAAAGGAAAATAAAGAATGTGAAGAACAATGAAGCTATGGAAGGCAAGAATGATCATCCAAATACAGACACTGATGACAATTTTTATGAAATAAATGATGATGGAGTTGCCGATCAGAGCCCATTTGAAAATCAGGAAGAGATTGAAATTGGTGAAGTGCTCACTGAGGCTGGTAAGTCAAAGAAAGCTAAGAAAAAGAAAAAGAAGGATAGTAATTCGTTAGAGTTTGTGAAGTCACTTGAAAAGGAAGTAGAAGCTAGTCAGGAGAACAGCTCAAAAGGGATATCAGGTGTACCCAAGAAGGCTTCAAGAAAGAAAAAGAAGGATCTTGATTCGTCAAAGTCTAAGAAGACATTGGAAAGGGAAGTAGAAGCCGATCAGGCTGATGTTTTCCTTATTTCTTCTGGGGATGAGGACTCTTCGAAAGGAATGAAAAAATGGATTATGGAATACCATCAAAGTAGACCTGGGTTGAAGGTACTGCAGCAAAGAATTGATCAGTTTATGGTTGAACATGATGAAAAACTGGAACAGGAAAAGAAAGAGAAAGAAGCCCGTGCTGCAGACGGAGGATGGACAGTTGTCGTACATCATAAAGGAAGGAAGAAGACCACGGATGCTGAGAGTGGAATTACAGTAGGATCTGTTGCCCAGGCTGCTTTGGAGGACAAGGTGGCCAAGAAGAAGCGCACAGAAGTTGCTGGGCTAGATTTTTACCGGTTCCAAAGGAAAGAAGCTCAGAGAAACGAAATTATGATGCTCCAGAGCAAATTTGAGCAAGATAAAAAGCGGATACAGCAGTTAAGAGCAGCTAGGAAGTTTCGACCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
RRP7

Protein Analysis

355

Amino Acids

40.5

Weight (kDa)

9.69

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP7 PF12923 230 - 354 3.9e-27 Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 694
AciI CCGC 1 cut(s) 1021
AclWI GGATC 3 cut(s) 106, 564, 880
AcoI YGGCCR 1 cut(s) 906
AcsI RAATTY 2 cut(s) 64, 1001
AfaI GTAC 3 cut(s) 525, 711, 819
AgeI ACCGGT 1 cut(s) 948
AgsI TTSAA 9 cut(s) 80, 164, 176, 359, 377, 473, 540, 706, 743
AjnI CCWGG 2 cut(s) 697, 882
AluBI AGCT 7 cut(s) 73, 266, 419, 488, 504, 968, 1043
AluI AGCT 7 cut(s) 73, 266, 419, 488, 504, 968, 1043
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 3 cut(s) 106, 564, 880
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 1 cut(s) 906
ApeKI GCWGC 4 cut(s) 715, 791, 887, 1040
ApoI RAATTY 2 cut(s) 64, 1001
AsiGI ACCGGT 1 cut(s) 948
AspLEI GCGC 1 cut(s) 921
AsuHPI GGTGA 1 cut(s) 395
AsuII TTCGAA 1 cut(s) 653
BaeI ACNNNNGTAYC 2 cut(s) 1016, 1049
BalI TGGCCA 1 cut(s) 908
BanII GRGCYC 1 cut(s) 353
BbsI GAAGAC 3 cut(s) 38, 587, 845
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 4 cut(s) 727, 778, 874, 1052
BccI CCATC 4 cut(s) 4, 326, 693, 798
BciT130I CCWGG 2 cut(s) 699, 884
BciVI GTATCC 1 cut(s) 1017
BclI TGATCA 2 cut(s) 283, 727
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 3 cut(s) 489, 938, 1044
BfmI CTRYAG 3 cut(s) 102, 713, 792
BfuI GTATCC 1 cut(s) 1017
BglI GCCNNNNNGGC 1 cut(s) 611
BisI GCNGC 4 cut(s) 716, 792, 888, 1041
BlsI GCNGC 4 cut(s) 717, 793, 889, 1042
Bme1390I CCNGG 2 cut(s) 699, 884
BmiI GGNNCC 1 cut(s) 953
BmrFI CCNGG 2 cut(s) 699, 884
BmsI GCATC 3 cut(s) 130, 838, 978
BoxI GACNNNNGTC 1 cut(s) 812
BpiI GAAGAC 3 cut(s) 38, 587, 845
BplI GAGNNNNNCTC 2 cut(s) 488, 520
BpmI CTGGAG 1 cut(s) 977
Bpu14I TTCGAA 1 cut(s) 653
BsaJI CCNNGG 3 cut(s) 698, 843, 882
BsaWI WCCGGW 1 cut(s) 948
Bse118I RCCGGY 1 cut(s) 948
Bse1I ACTGG 1 cut(s) 762
BseBI CCWGG 2 cut(s) 699, 884
BseDI CCNNGG 3 cut(s) 698, 843, 882
BseGI GGATG 5 cut(s) 15, 286, 646, 809, 853
BseMII CTCAG 3 cut(s) 387, 843, 983
BseNI ACTGG 1 cut(s) 762
BseXI GCAGC 4 cut(s) 727, 778, 874, 1052
BseYI CCCAGC 2 cut(s) 57, 932
BshFI GGCC 1 cut(s) 908
BshTI ACCGGT 1 cut(s) 948
BsiHKAI GWGCWC 1 cut(s) 393
BsiSI CCGG 1 cut(s) 949
BsmAI GTCTC 1 cut(s) 172
BsnI GGCC 1 cut(s) 908
Bsp119I TTCGAA 1 cut(s) 653
Bsp1286I GDGCHC 2 cut(s) 353, 393
Bsp143I GATC 7 cut(s) 98, 283, 343, 556, 607, 727, 872
BspACI CCGC 1 cut(s) 1021
BspANI GGCC 1 cut(s) 908
BspCNI CTCAG 3 cut(s) 388, 844, 982
BspLI GGNNCC 1 cut(s) 953
BspMAI CTGCAG 3 cut(s) 106, 717, 796
BspPI GGATC 3 cut(s) 106, 564, 880
BspT104I TTCGAA 1 cut(s) 653
BsrFI RCCGGY 1 cut(s) 948
BsrI ACTGG 1 cut(s) 762
BssAI RCCGGY 1 cut(s) 948
BssECI CCNNGG 3 cut(s) 698, 843, 882
BssMI GATC 7 cut(s) 98, 283, 343, 556, 607, 727, 872
Bst2UI CCWGG 2 cut(s) 699, 884
Bst4CI ACNGT 2 cut(s) 811, 868
Bst6I CTCTTC 2 cut(s) 363, 655
BstBI TTCGAA 1 cut(s) 653
BstDEI CTNAG 5 cut(s) 396, 420, 576, 852, 969
BstDSI CCRYGG 1 cut(s) 843
BstF5I GGATG 5 cut(s) 15, 286, 646, 809, 853
BstHHI GCGC 1 cut(s) 921
BstKTI GATC 7 cut(s) 101, 286, 346, 559, 610, 730, 875
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 7 cut(s) 98, 283, 343, 556, 607, 727, 872
BstMWI GCNNNNNNNGC 5 cut(s) 197, 611, 791, 887, 1027
BstNI CCWGG 2 cut(s) 699, 884
BstPAI GACNNNNGTC 1 cut(s) 812
BstSCI CCNGG 2 cut(s) 697, 882
BstSFI CTRYAG 3 cut(s) 102, 713, 792
BstV1I GCAGC 4 cut(s) 727, 778, 874, 1052
BstV2I GAAGAC 3 cut(s) 38, 587, 845
BstX2I RGATCY 3 cut(s) 98, 556, 872
BstYI RGATCY 3 cut(s) 98, 556, 872
BsuI GTATCC 1 cut(s) 1017
BsuRI GGCC 1 cut(s) 908
BtgI CCRYGG 1 cut(s) 843
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 5 cut(s) 15, 286, 646, 809, 853
BtsIMutI CAGTG 2 cut(s) 300, 393
CaiI CAGNNNCTG 1 cut(s) 302
CfoI GCGC 1 cut(s) 921
Cfr10I RCCGGY 1 cut(s) 948
Csp6I GTAC 3 cut(s) 524, 710, 818
CspAI ACCGGT 1 cut(s) 948
CviAII CATG 1 cut(s) 746
CviQI GTAC 3 cut(s) 524, 710, 818
DdeI CTNAG 5 cut(s) 396, 420, 576, 852, 969
DpnI GATC 7 cut(s) 100, 285, 345, 558, 609, 729, 874
DpnII GATC 7 cut(s) 98, 283, 343, 556, 607, 727, 872
EaeI YGGCCR 1 cut(s) 906
Eam1104I CTCTTC 2 cut(s) 363, 655
EarI CTCTTC 2 cut(s) 363, 655
Eco24I GRGCYC 1 cut(s) 353
Eco32I GATATC 1 cut(s) 516
EcoRII CCWGG 2 cut(s) 697, 882
EcoRV GATATC 1 cut(s) 516
EcoT38I GRGCYC 1 cut(s) 353
FaeI CATG 1 cut(s) 749
FaiI YATR 8 cut(s) 39, 269, 318, 677, 737, 747, 825, 986
FatI CATG 1 cut(s) 745
FbaI TGATCA 2 cut(s) 283, 727
FblI GTMKAC 1 cut(s) 694
Fnu4HI GCNGC 4 cut(s) 716, 792, 888, 1041
FokI GGATG 5 cut(s) 22, 273, 653, 816, 860
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 4 cut(s) 716, 792, 888, 1041
FspBI CTAG 3 cut(s) 489, 938, 1044
GlaI GCGC 1 cut(s) 920
GluI GCNGC 4 cut(s) 716, 792, 888, 1041
GsaI CCCAGC 2 cut(s) 61, 936
GsuI CTGGAG 1 cut(s) 977
HaeIII GGCC 1 cut(s) 908
HapII CCGG 1 cut(s) 949
HhaI GCGC 1 cut(s) 921
Hin1II CATG 1 cut(s) 749
Hin6I GCGC 1 cut(s) 919
HinP1I GCGC 1 cut(s) 919
HinfI GANTC 3 cut(s) 146, 563, 647
HpaII CCGG 1 cut(s) 949
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 2 cut(s) 524, 695
Hpy188I TCNGA 2 cut(s) 348, 972
Hpy188III TCNNGA 6 cut(s) 150, 365, 494, 540, 560, 994
Hpy8I GTNNAC 2 cut(s) 524, 695
HpyAV CCTTC 9 cut(s) 13, 43, 147, 266, 430, 526, 547, 700, 825
HpyCH4III ACNGT 2 cut(s) 811, 868
HpyCH4V TGCA 3 cut(s) 104, 715, 794
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 611, 791, 887, 1027
HpyF3I CTNAG 5 cut(s) 396, 420, 576, 852, 969
Hsp92II CATG 1 cut(s) 749
HspAI GCGC 1 cut(s) 919
Ksp22I TGATCA 2 cut(s) 283, 727
Kzo9I GATC 7 cut(s) 98, 283, 343, 556, 607, 727, 872
LmnI GCTCC 2 cut(s) 70, 996
Lsp1109I GCAGC 4 cut(s) 727, 778, 874, 1052
LweI GCATC 3 cut(s) 130, 838, 978
MaeI CTAG 3 cut(s) 489, 938, 1044
MaeIII GTNAC 1 cut(s) 465
MalI GATC 7 cut(s) 100, 285, 345, 558, 609, 729, 874
MboI GATC 7 cut(s) 98, 283, 343, 556, 607, 727, 872
MflI RGATCY 3 cut(s) 98, 556, 872
MhlI GDGCHC 2 cut(s) 353, 393
MlsI TGGCCA 1 cut(s) 908
MluNI TGGCCA 1 cut(s) 908
MlyI GAGTC 1 cut(s) 641
MnlI CCTC 4 cut(s) 391, 637, 794, 889
Mox20I TGGCCA 1 cut(s) 908
MscI TGGCCA 1 cut(s) 908
MseI TTAA 1 cut(s) 1034
Msp20I TGGCCA 1 cut(s) 908
MspI CCGG 1 cut(s) 949
MspR9I CCNGG 2 cut(s) 699, 884
MvaI CCWGG 2 cut(s) 699, 884
MwoI GCNNNNNNNGC 5 cut(s) 197, 611, 791, 887, 1027
NdeII GATC 7 cut(s) 98, 283, 343, 556, 607, 727, 872
NlaIII CATG 1 cut(s) 749
NlaIV GGNNCC 1 cut(s) 953
NmuCI GTSAC 1 cut(s) 465
NspV TTCGAA 1 cut(s) 653
PfeI GAWTC 2 cut(s) 146, 563
PinAI ACCGGT 1 cut(s) 948
PkrI GCNGC 4 cut(s) 717, 793, 889, 1042
PleI GAGTC 1 cut(s) 641
PpsI GAGTC 1 cut(s) 641
PshAI GACNNNNGTC 1 cut(s) 812
Psp6I CCWGG 2 cut(s) 697, 882
PspFI CCCAGC 2 cut(s) 57, 932
PspGI CCWGG 2 cut(s) 697, 882
PspN4I GGNNCC 1 cut(s) 953
PstI CTGCAG 3 cut(s) 106, 717, 796
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 3 cut(s) 98, 556, 872
RsaI GTAC 3 cut(s) 525, 711, 819
RsaNI GTAC 3 cut(s) 524, 710, 818
SaqAI TTAA 1 cut(s) 1034
SatI GCNGC 4 cut(s) 716, 792, 888, 1041
Sau3AI GATC 7 cut(s) 98, 283, 343, 556, 607, 727, 872
SchI GAGTC 1 cut(s) 641
ScrFI CCNGG 2 cut(s) 699, 884
SduI GDGCHC 2 cut(s) 353, 393
SfaNI GCATC 3 cut(s) 130, 838, 978
SfcI CTRYAG 3 cut(s) 102, 713, 792
SfuI TTCGAA 1 cut(s) 653
SsiI CCGC 1 cut(s) 1021
SspMI CTAG 3 cut(s) 489, 938, 1044
StyD4I CCNGG 2 cut(s) 697, 882
TaaI ACNGT 2 cut(s) 811, 868
TaqI TCGA 3 cut(s) 151, 653, 1054
TfiI GAWTC 2 cut(s) 146, 563
Tru1I TTAA 1 cut(s) 1034
Tru9I TTAA 1 cut(s) 1034
TscAI CASTG 2 cut(s) 307, 400
TseFI GTSAC 1 cut(s) 465
TseI GCWGC 4 cut(s) 715, 791, 887, 1040
Tsp45I GTSAC 1 cut(s) 465
TspDTI ATGAA 6 cut(s) 17, 32, 276, 333, 677, 765
TspGWI ACGGA 2 cut(s) 813, 860
TspRI CASTG 2 cut(s) 307, 400
XapI RAATTY 2 cut(s) 64, 1001
XmiI GTMKAC 1 cut(s) 694
XspI CTAG 3 cut(s) 489, 938, 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.