pycom17g09250

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
7003263 .. 7007700
4438 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 927 bp
ATGCAAGCGCAAAGCATAGTAGCCCCAAGTGCTTACATATCGACTGGAACCCTAGTTATTCACATTGTACTCAGCTGGGTTGCAGTGTACAAACTAGGACTGGGTTTGCTGGGTGCTTCGCTGGTGCTGAGTTTATCGTGGTGGATCACTGTGGTGGCACAGTTCGTGTACGTTGTGAAGAGTGACAGGTGTAAGCACACGTGGACAGGGTTTTCGTGGCAAGCTTTTAGCGGATTGTATAGTTTCTTCAAGTTGTCTTTGGCATCTGCTGTCATGCTTTGCCTTGAGACGTGGTACTTCCAGATTCTTGTTTTGCTTGCTGGGTTGCTGGAAAACCCTGAGCTCGCCCTTGACTCTCTCTCTATCTGCATGACAATCAATGGATGGGTCTTCATGATCTCAGTTGGGTTAAATGCAGCGGCAAGTGTGAGAGTGAGTAATGAGCTTGGAGCTGGACATCCAAAGTCTACAGCATTTTCAGTTGTGGTGGTGACTACAGTCTCTTTCATTATCTCAATCTTCGCAGCCATAGTTGTTCTTTTACTGCGTCATAAGTTGAGCTACGCCTTCACCGAAGGTGAAGCCGTGGCTGCTGCTGTATCTGATCTCTGCCCACTTCTCGCCCTCACCCTCCTCCTTAATGGAGTCCAGCCAGTCTTGTCCGGTGTTGCTGTTGGGTGTGGATGGCAGGCTTTTGTTGCGTATGTGAATGTAGGATGTTATTACGTGGTTGGAGTACCTTTTGGTGCGCTTCTAGGGTTTTACTTCAAGCTCGGTGCTAAGGGAATATGGTTAGGAATGGTGGGGGGCACATTGATGCAAACACTCATCCTAATGTGGGTCACCATTCGGACTGATTGGAACAAAGAGGTGGAAGAGGCAAAGAAAAGGTTGAATAAGTGGGATGTAGACGAGCCTCTCAAGTAG

Protein Analysis

309

Amino Acids

33.45

Weight (kDa)

8.16

Isoelectric Point (pI)

18.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 89 - 250 1e-31 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 467, 909
AciI CCGC 2 cut(s) 231, 419
AclWI GGATC 1 cut(s) 152
AcvI CACGTG 1 cut(s) 201
AfaI GTAC 5 cut(s) 69, 89, 170, 296, 738
AfiI CCNNNNNNNGG 1 cut(s) 838
AflIII ACRYGT 1 cut(s) 198
AgsI TTSAA 3 cut(s) 250, 769, 895
AjiI CACGTC 1 cut(s) 291
AleI CACNNNNGTG 1 cut(s) 152
AluBI AGCT 7 cut(s) 75, 224, 343, 445, 452, 561, 772
AluI AGCT 7 cut(s) 75, 224, 343, 445, 452, 561, 772
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 281, 505
AlwI GGATC 1 cut(s) 152
ApeKI GCWGC 4 cut(s) 416, 524, 590, 593
ArsI GACNNNNNNTTYG 2 cut(s) 196, 228
AspLEI GCGC 2 cut(s) 10, 751
AsuHPI GGTGA 5 cut(s) 502, 562, 590, 619, 835
BaeGI GKGCMC 1 cut(s) 812
BanII GRGCYC 1 cut(s) 345
BarI GAAGNNNNNNTAC 2 cut(s) 230, 262
BbrPI CACGTG 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 4 cut(s) 428, 536, 577, 580
BccI CCATC 2 cut(s) 378, 678
BceAI ACGGC 1 cut(s) 569
BcoDI GTCTC 2 cut(s) 281, 505
BfaI CTAG 3 cut(s) 53, 95, 755
BfmI CTRYAG 2 cut(s) 468, 495
BisI GCNGC 5 cut(s) 417, 420, 525, 591, 594
BlsI GCNGC 5 cut(s) 418, 421, 526, 592, 595
BmgBI CACGTC 1 cut(s) 291
BmiI GGNNCC 1 cut(s) 49
BmrI ACTGGG 1 cut(s) 110
BmsI GCATC 2 cut(s) 272, 807
BmuI ACTGGG 1 cut(s) 110
BoxI GACNNNNGTC 1 cut(s) 497
BpiI GAAGAC 1 cut(s) 382
Bpu10I CCTNAGC 2 cut(s) 339, 780
BpuEI CTTGAG 2 cut(s) 305, 905
BsaAI YACGTR 2 cut(s) 201, 727
BsaJI CCNNGG 1 cut(s) 585
BsaWI WCCGGW 1 cut(s) 662
Bsc4I CCNNNNNNNGG 1 cut(s) 838
Bse1I ACTGG 3 cut(s) 49, 105, 653
BseDI CCNNGG 1 cut(s) 585
BseGI GGATG 6 cut(s) 389, 457, 689, 722, 828, 910
BseLI CCNNNNNNNGG 1 cut(s) 838
BseMII CTCAG 4 cut(s) 85, 119, 330, 414
BseNI ACTGG 3 cut(s) 49, 105, 653
BseRI GAGGAG 1 cut(s) 623
BseSI GKGCMC 1 cut(s) 812
BseXI GCAGC 4 cut(s) 428, 536, 577, 580
BseYI CCCAGC 3 cut(s) 75, 109, 320
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 663
BslI CCNNNNNNNGG 1 cut(s) 838
BsmAI GTCTC 2 cut(s) 281, 505
BsmBI CGTCTC 1 cut(s) 281
Bsp1286I GDGCHC 2 cut(s) 345, 812
Bsp1407I TGTACA 1 cut(s) 87
Bsp143I GATC 3 cut(s) 144, 396, 604
BspACI CCGC 2 cut(s) 231, 419
BspCNI CTCAG 4 cut(s) 84, 120, 331, 413
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 49
BspPI GGATC 1 cut(s) 152
BsrGI TGTACA 1 cut(s) 87
BsrI ACTGG 3 cut(s) 49, 105, 653
BssECI CCNNGG 1 cut(s) 585
BssMI GATC 3 cut(s) 144, 396, 604
Bst4CI ACNGT 3 cut(s) 151, 162, 499
Bst6I CTCTTC 2 cut(s) 173, 870
BstAUI TGTACA 1 cut(s) 87
BstBAI YACGTR 2 cut(s) 201, 727
BstC8I GCNNGC 5 cut(s) 6, 222, 318, 345, 690
BstDEI CTNAG 5 cut(s) 71, 128, 339, 400, 780
BstDSI CCRYGG 1 cut(s) 585
BstEII GGTNACC 1 cut(s) 841
BstF5I GGATG 6 cut(s) 389, 457, 689, 722, 828, 910
BstHHI GCGC 2 cut(s) 10, 751
BstKTI GATC 3 cut(s) 147, 399, 607
BstMAI GTCTC 2 cut(s) 281, 505
BstMBI GATC 3 cut(s) 144, 396, 604
BstMWI GCNNNNNNNGC 3 cut(s) 29, 590, 698
BstPAI GACNNNNGTC 1 cut(s) 497
BstPI GGTNACC 1 cut(s) 841
BstSFI CTRYAG 2 cut(s) 468, 495
BstSLI GKGCMC 1 cut(s) 812
BstV1I GCAGC 4 cut(s) 428, 536, 577, 580
BstV2I GAAGAC 1 cut(s) 382
BtgI CCRYGG 1 cut(s) 585
BtrI CACGTC 1 cut(s) 291
BtsCI GGATG 6 cut(s) 389, 457, 689, 722, 828, 910
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 90, 147
Cac8I GCNNGC 5 cut(s) 6, 222, 318, 345, 690
CciI TCATGA 1 cut(s) 393
CfoI GCGC 2 cut(s) 10, 751
CseI GACGC 1 cut(s) 536
Csp6I GTAC 5 cut(s) 68, 88, 169, 295, 737
CviAII CATG 3 cut(s) 274, 370, 394
CviQI GTAC 5 cut(s) 68, 88, 169, 295, 737
DdeI CTNAG 5 cut(s) 71, 128, 339, 400, 780
DpnI GATC 3 cut(s) 146, 398, 606
DpnII GATC 3 cut(s) 144, 396, 604
Eam1104I CTCTTC 2 cut(s) 173, 870
EarI CTCTTC 2 cut(s) 173, 870
Ecl136II GAGCTC 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 343
Eco72I CACGTG 1 cut(s) 201
Eco91I GGTNACC 1 cut(s) 841
EcoICRI GAGCTC 1 cut(s) 343
EcoO65I GGTNACC 1 cut(s) 841
EcoT38I GRGCYC 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 281
FaeI CATG 3 cut(s) 277, 373, 397
FatI CATG 3 cut(s) 273, 369, 393
FblI GTMKAC 2 cut(s) 467, 909
Fnu4HI GCNGC 5 cut(s) 417, 420, 525, 591, 594
FokI GGATG 6 cut(s) 396, 444, 696, 729, 815, 917
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 5 cut(s) 417, 420, 525, 591, 594
FspBI CTAG 3 cut(s) 53, 95, 755
GlaI GCGC 2 cut(s) 9, 750
GluI GCNGC 5 cut(s) 417, 420, 525, 591, 594
GsaI CCCAGC 3 cut(s) 79, 113, 324
HapII CCGG 1 cut(s) 663
HgaI GACGC 1 cut(s) 536
HhaI GCGC 2 cut(s) 10, 751
Hin1II CATG 3 cut(s) 277, 373, 397
Hin6I GCGC 2 cut(s) 8, 749
HinP1I GCGC 2 cut(s) 8, 749
HindIII AAGCTT 1 cut(s) 222
HinfI GANTC 3 cut(s) 304, 353, 645
HpaII CCGG 1 cut(s) 663
HphI GGTGA 5 cut(s) 502, 562, 590, 619, 835
Hpy166II GTNNAC 5 cut(s) 88, 169, 204, 468, 910
Hpy188I TCNGA 2 cut(s) 604, 852
Hpy188III TCNNGA 2 cut(s) 301, 394
Hpy8I GTNNAC 5 cut(s) 88, 169, 204, 468, 910
HpyAV CCTTC 2 cut(s) 569, 577
HpyCH4III ACNGT 3 cut(s) 151, 162, 499
HpyCH4IV ACGT 4 cut(s) 171, 200, 290, 726
HpyCH4V TGCA 5 cut(s) 4, 83, 369, 416, 820
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 590, 698
HpyF3I CTNAG 5 cut(s) 71, 128, 339, 400, 780
HpySE526I ACGT 4 cut(s) 171, 200, 290, 726
Hsp92II CATG 3 cut(s) 277, 373, 397
HspAI GCGC 2 cut(s) 8, 749
Kzo9I GATC 3 cut(s) 144, 396, 604
LmnI GCTCC 1 cut(s) 449
Lsp1109I GCAGC 4 cut(s) 428, 536, 577, 580
LweI GCATC 2 cut(s) 272, 807
MaeI CTAG 3 cut(s) 53, 95, 755
MaeII ACGT 4 cut(s) 171, 200, 290, 726
MaeIII GTNAC 3 cut(s) 182, 490, 841
MalI GATC 3 cut(s) 146, 398, 606
MboI GATC 3 cut(s) 144, 396, 604
MboII GAAGA 5 cut(s) 190, 238, 382, 511, 887
MhlI GDGCHC 2 cut(s) 345, 812
MlyI GAGTC 2 cut(s) 347, 654
MmeI TCCRAC 1 cut(s) 712
MnlI CCTC 6 cut(s) 635, 641, 644, 862, 871, 927
MseI TTAA 2 cut(s) 410, 639
MslI CAYNNNNRTG 3 cut(s) 152, 815, 833
MspA1I CMGCKG 2 cut(s) 75, 419
MspI CCGG 1 cut(s) 663
MwoI GCNNNNNNNGC 3 cut(s) 29, 590, 698
NdeII GATC 3 cut(s) 144, 396, 604
NlaIII CATG 3 cut(s) 277, 373, 397
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 3 cut(s) 182, 490, 841
OliI CACNNNNGTG 1 cut(s) 152
PagI TCATGA 1 cut(s) 393
PcsI WCGNNNNNNNCGW 1 cut(s) 570
PfeI GAWTC 1 cut(s) 304
PkrI GCNGC 5 cut(s) 418, 421, 526, 592, 595
PleI GAGTC 2 cut(s) 347, 653
PmaCI CACGTG 1 cut(s) 201
PmlI CACGTG 1 cut(s) 201
PpsI GAGTC 2 cut(s) 347, 653
Ppu21I YACGTR 2 cut(s) 201, 727
PshAI GACNNNNGTC 1 cut(s) 497
Psp124BI GAGCTC 1 cut(s) 345
PspCI CACGTG 1 cut(s) 201
PspEI GGTNACC 1 cut(s) 841
PspFI CCCAGC 3 cut(s) 75, 109, 320
PspN4I GGNNCC 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 75
RsaI GTAC 5 cut(s) 69, 89, 170, 296, 738
RsaNI GTAC 5 cut(s) 68, 88, 169, 295, 737
RseI CAYNNNNRTG 3 cut(s) 152, 815, 833
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 2 cut(s) 410, 639
SatI GCNGC 5 cut(s) 417, 420, 525, 591, 594
Sau3AI GATC 3 cut(s) 144, 396, 604
SchI GAGTC 2 cut(s) 347, 654
SduI GDGCHC 2 cut(s) 345, 812
SfaNI GCATC 2 cut(s) 272, 807
SfcI CTRYAG 2 cut(s) 468, 495
SmiMI CAYNNNNRTG 3 cut(s) 152, 815, 833
SmlI CTYRAG 2 cut(s) 284, 920
SmoI CTYRAG 2 cut(s) 284, 920
SsiI CCGC 2 cut(s) 231, 419
SspMI CTAG 3 cut(s) 53, 95, 755
SstI GAGCTC 1 cut(s) 345
TaaI ACNGT 3 cut(s) 151, 162, 499
TaiI ACGT 4 cut(s) 174, 203, 293, 729
TaqI TCGA 1 cut(s) 41
TatI WGTACW 2 cut(s) 67, 87
TauI GCSGC 1 cut(s) 422
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 2 cut(s) 410, 639
Tru9I TTAA 2 cut(s) 410, 639
TscAI CASTG 2 cut(s) 90, 154
TseFI GTSAC 3 cut(s) 182, 490, 841
TseI GCWGC 4 cut(s) 416, 524, 590, 593
Tsp45I GTSAC 3 cut(s) 182, 490, 841
TspDTI ATGAA 2 cut(s) 382, 496
TspRI CASTG 2 cut(s) 90, 154
XmiI GTMKAC 2 cut(s) 467, 909
XspI CTAG 3 cut(s) 53, 95, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.