Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Reverse (-)

8398518 .. 8401546

Gene Structure 3029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTTGATGCAGAGGTTCAGAGCCACCACCAAGCTTGTGCCATATCTGTCTTCTGCAACCAATGCTGCTTCTGTTGCAGCCCATCATCATCCATTAACAAAGAGGCCTTGCTTTGGAACACTTTCACCTTCCTCGCCATCCTTGCTTGGCGATCACAAAGATTCAAAAGATAAAGTTCCTCACTTGATTCAAGCCAAGTCGGTTTCAACGAATTCATCCTCCGTTGCAAAACAAGCCGTGCCTGAAAATGAAGTCGAACAGGTTGAGTTACTCACTGCAACTGAGGATTTACATGGAGGAGTTATTGTTGACATGACCGAACCTATGGATTCTGCGGTTTTTGCTTCTTTGCTTCAAGCTTCCATATCGCATTGGAGGCAAAAGGGGAAGAGGGGCGTTTGGATCAAATTGCCAATCGCACGGTCAAATCTTGTTGATGCCGCAGTTAAGGAAGGATTTAGGTACCACCATGCTGAATCGGATTATTTAATGCTTGTACGTTGGATTCCCGAAACTGAGGACACTCTTCCTGCAAATGCTTCACACCGAGTAGGCATTGGCGCTTTTGTCATGAACAGTAAGAGAGAGATACTTGTGGTTCAGGAGATCAGTGGCAGATTCAGAAATACAGGTGTGTGGAAGTTGCCAACTGGGGCTGTTAATGAGGGTGAGGATATTTGTAAAGCTGCAGTTAGAGAGGTCAAGGAAGAGACAGGAATTGAAACAGAGTTCGTGGAGGTTTTAGCATTTAGGCAAGGCCACAAGTCATTCTTTCAAAAGTCAGATTTGTTCTTTGTTTGCATGCTGACCCCAAAATCCTTCGACATCCAAAAGCAGAACTTGGAGATTGAGGCAGCCCAGTGGATGCCAGTTGGGGACTATGCAGCTCAACCCTTTGTTAAGAAAAACAAACTCTTTGACTACGTAGCAGAAATATGCTTGGCAAAATCAGACAAGGACTACGCCGGTTTTACTGCGCTGAGTACAACTACATCCTCTGGAAAAAGAAGCTACCTGTACTATAACAAACGGGATATGGAAAAGATTCAGGCTGCCGGTGATCCGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

357

Amino Acids

39.61

Weight (kDa)

7.71

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	91 - 169	4.6e-31	Nudix hydrolase domain
NUDIX	PF00293	182 - 301	3.4e-22	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	462
AccB1I	GGYRCC	1 cut(s)	462
AciI	CCGC	3 cut(s)	335, 441, 1064
AclWI	GGATC	2 cut(s)	410, 1055
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	4 cut(s)	464, 498, 985, 1019
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	6 cut(s)	165, 191, 207, 356, 722, 776
AluBI	AGCT	5 cut(s)	34, 359, 686, 887, 1011
AluI	AGCT	5 cut(s)	34, 359, 686, 887, 1011
Alw26I	GTCTC	1 cut(s)	704
AlwI	GGATC	2 cut(s)	410, 1055
AoxI	GGCC	2 cut(s)	104, 757
ApeKI	GCWGC	6 cut(s)	65, 77, 686, 854, 884, 1052
ApoI	RAATTY	1 cut(s)	211
Asp700I	GAANNNNTTC	2 cut(s)	121, 1044
Asp718I	GGTACC	1 cut(s)	462
AspLEI	GCGC	2 cut(s)	563, 979
AsuHPI	GGTGA	3 cut(s)	117, 680, 1070
BanI	GGYRCC	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	42
BbvI	GCAGC	6 cut(s)	52, 89, 673, 866, 896, 1039
BccI	CCATC	2 cut(s)	90, 145
BceAI	ACGGC	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	687
BfoI	RGCGCY	1 cut(s)	564
BisI	GCNGC	7 cut(s)	66, 78, 441, 687, 855, 885, 1053
BlsI	GCNGC	7 cut(s)	67, 79, 442, 688, 856, 886, 1054
BmiI	GGNNCC	1 cut(s)	464
BmrI	ACTGGG	2 cut(s)	660, 853
BmsI	GCATC	2 cut(s)	427, 855
BmuI	ACTGGG	2 cut(s)	660, 853
BpiI	GAAGAC	1 cut(s)	42
BsaAI	YACGTR	1 cut(s)	925
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	2 cut(s)	965, 1055
Bse1I	ACTGG	3 cut(s)	655, 859, 869
BseGI	GGATG	6 cut(s)	88, 137, 215, 825, 870, 992
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMII	CTCAG	3 cut(s)	273, 507, 971
BseNI	ACTGG	3 cut(s)	655, 859, 869
BseRI	GAGGAG	1 cut(s)	312
BseXI	GCAGC	6 cut(s)	52, 89, 673, 866, 896, 1039
BshFI	GGCC	2 cut(s)	106, 759
BshNI	GGYRCC	1 cut(s)	462
BsiSI	CCGG	2 cut(s)	966, 1056
BslFI	GGGAC	1 cut(s)	890
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	704
BsmFI	GGGAC	1 cut(s)	890
BsnI	GGCC	2 cut(s)	106, 759
Bsp143I	GATC	4 cut(s)	151, 402, 606, 1060
BspACI	CCGC	3 cut(s)	335, 441, 1064
BspANI	GGCC	2 cut(s)	106, 759
BspCNI	CTCAG	3 cut(s)	274, 508, 972
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	1 cut(s)	464
BspMAI	CTGCAG	1 cut(s)	691
BspPI	GGATC	2 cut(s)	410, 1055
BspT107I	GGYRCC	1 cut(s)	462
BsrFI	RCCGGY	2 cut(s)	965, 1055
BsrI	ACTGG	3 cut(s)	655, 859, 869
BssAI	RCCGGY	2 cut(s)	965, 1055
BssMI	GATC	4 cut(s)	151, 402, 606, 1060
Bst4CI	ACNGT	2 cut(s)	423, 578
Bst6I	CTCTTC	3 cut(s)	383, 531, 702
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstBAI	YACGTR	1 cut(s)	925
BstC8I	GCNNGC	1 cut(s)	803
BstDEI	CTNAG	3 cut(s)	282, 516, 980
BstF5I	GGATG	6 cut(s)	88, 137, 215, 825, 870, 992
BstH2I	RGCGCY	1 cut(s)	564
BstHHI	GCGC	2 cut(s)	563, 979
BstKTI	GATC	4 cut(s)	154, 405, 609, 1063
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	4 cut(s)	151, 402, 606, 1060
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 74, 142, 233, 341, 376
BstNSI	RCATGY	1 cut(s)	805
BstSFI	CTRYAG	1 cut(s)	687
BstSNI	TACGTA	1 cut(s)	925
BstV1I	GCAGC	6 cut(s)	52, 89, 673, 866, 896, 1039
BstV2I	GAAGAC	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	106, 759
BtsCI	GGATG	6 cut(s)	88, 137, 215, 825, 870, 992
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	3 cut(s)	273, 616, 866
Cac8I	GCNNGC	1 cut(s)	803
CciI	TCATGA	1 cut(s)	570
CfoI	GCGC	2 cut(s)	563, 979
Cfr10I	RCCGGY	2 cut(s)	965, 1055
Csp6I	GTAC	4 cut(s)	463, 497, 984, 1018
CspCI	CAANNNNNGTGG	2 cut(s)	16, 51
CviAII	CATG	5 cut(s)	293, 313, 470, 571, 802
CviQI	GTAC	4 cut(s)	463, 497, 984, 1018
DdeI	CTNAG	3 cut(s)	282, 516, 980
DpnI	GATC	4 cut(s)	153, 404, 608, 1062
DpnII	GATC	4 cut(s)	151, 402, 606, 1060
Eam1104I	CTCTTC	3 cut(s)	383, 531, 702
EarI	CTCTTC	3 cut(s)	383, 531, 702
Eco105I	TACGTA	1 cut(s)	925
Eco147I	AGGCCT	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	211
FaeI	CATG	5 cut(s)	296, 316, 473, 574, 805
FalI	AAGNNNNNCTT	4 cut(s)	755, 787, 824, 856
FaqI	GGGAC	1 cut(s)	890
FatI	CATG	5 cut(s)	292, 312, 469, 570, 801
Fnu4HI	GCNGC	7 cut(s)	66, 78, 441, 687, 855, 885, 1053
FokI	GGATG	6 cut(s)	75, 124, 202, 812, 877, 979
Fsp4HI	GCNGC	7 cut(s)	66, 78, 441, 687, 855, 885, 1053
GlaI	GCGC	2 cut(s)	562, 978
GluI	GCNGC	7 cut(s)	66, 78, 441, 687, 855, 885, 1053
HaeII	RGCGCY	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	106, 759
HapII	CCGG	2 cut(s)	966, 1056
HhaI	GCGC	2 cut(s)	563, 979
Hin1II	CATG	5 cut(s)	296, 316, 473, 574, 805
Hin6I	GCGC	2 cut(s)	561, 977
HinP1I	GCGC	2 cut(s)	561, 977
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	2 cut(s)	32, 357
HinfI	GANTC	7 cut(s)	161, 187, 329, 476, 505, 618, 1045
HpaII	CCGG	2 cut(s)	966, 1056
HphI	GGTGA	3 cut(s)	117, 680, 1070
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	5 cut(s)	20, 481, 623, 784, 952
Hpy188III	TCNNGA	4 cut(s)	509, 571, 602, 999
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	3 cut(s)	138, 446, 829
HpyCH4III	ACNGT	2 cut(s)	423, 578
HpyCH4IV	ACGT	2 cut(s)	499, 924
HpyCH4V	TGCA	9 cut(s)	10, 56, 77, 227, 278, 533, 689, 801, 884
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 74, 142, 233, 341, 376
HpyF3I	CTNAG	3 cut(s)	282, 516, 980
HpySE526I	ACGT	2 cut(s)	499, 924
Hsp92II	CATG	5 cut(s)	296, 316, 473, 574, 805
HspAI	GCGC	2 cut(s)	561, 977
KpnI	GGTACC	1 cut(s)	466
Kzo9I	GATC	4 cut(s)	151, 402, 606, 1060
Lsp1109I	GCAGC	6 cut(s)	52, 89, 673, 866, 896, 1039
LweI	GCATC	2 cut(s)	427, 855
MaeII	ACGT	2 cut(s)	499, 924
MaeIII	GTNAC	1 cut(s)	267
MalI	GATC	4 cut(s)	153, 404, 608, 1062
MboI	GATC	4 cut(s)	151, 402, 606, 1060
MboII	GAAGA	4 cut(s)	42, 400, 518, 719
MluCI	AATT	3 cut(s)	211, 407, 717
MmeI	TCCRAC	1 cut(s)	482
MroXI	GAANNNNTTC	2 cut(s)	121, 1044
MseI	TTAA	5 cut(s)	95, 447, 488, 660, 900
MspI	CCGG	2 cut(s)	966, 1056
MwoI	GCNNNNNNNGC	6 cut(s)	62, 74, 142, 233, 341, 376
NdeII	GATC	4 cut(s)	151, 402, 606, 1060
NlaIII	CATG	5 cut(s)	296, 316, 473, 574, 805
NlaIV	GGNNCC	1 cut(s)	464
NspI	RCATGY	1 cut(s)	805
PaeI	GCATGC	1 cut(s)	805
PagI	TCATGA	1 cut(s)	570
PceI	AGGCCT	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PdmI	GAANNNNTTC	2 cut(s)	121, 1044
PfeI	GAWTC	7 cut(s)	161, 187, 329, 476, 505, 618, 1045
PkrI	GCNGC	7 cut(s)	67, 79, 442, 688, 856, 886, 1054
Ppu21I	YACGTR	1 cut(s)	925
PspN4I	GGNNCC	1 cut(s)	464
PstI	CTGCAG	1 cut(s)	691
RsaI	GTAC	4 cut(s)	464, 498, 985, 1019
RsaNI	GTAC	4 cut(s)	463, 497, 984, 1018
SaqAI	TTAA	5 cut(s)	95, 447, 488, 660, 900
SatI	GCNGC	7 cut(s)	66, 78, 441, 687, 855, 885, 1053
Sau3AI	GATC	4 cut(s)	151, 402, 606, 1060
SfaNI	GCATC	2 cut(s)	427, 855
SfcI	CTRYAG	1 cut(s)	687
SnaBI	TACGTA	1 cut(s)	925
SphI	GCATGC	1 cut(s)	805
Sse9I	AATT	3 cut(s)	211, 407, 717
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	3 cut(s)	335, 441, 1064
StuI	AGGCCT	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	423, 578
TaiI	ACGT	2 cut(s)	502, 927
TaqI	TCGA	2 cut(s)	255, 822
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	3 cut(s)	211, 407, 717
TatI	WGTACW	2 cut(s)	983, 1017
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	7 cut(s)	161, 187, 329, 476, 505, 618, 1045
Tru1I	TTAA	5 cut(s)	95, 447, 488, 660, 900
Tru9I	TTAA	5 cut(s)	95, 447, 488, 660, 900
TscAI	CASTG	3 cut(s)	280, 616, 866
TseI	GCWGC	6 cut(s)	65, 77, 686, 854, 884, 1052
TspDTI	ATGAA	3 cut(s)	204, 264, 587
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	3 cut(s)	280, 616, 866
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	1 cut(s)	805
XmnI	GAANNNNTTC	2 cut(s)	121, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.