Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

24338119 .. 24339438

Gene Structure 1320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCCACTGAAGAGGTTAACAAACCTCCATCACTCCCTCCTTACCCTCAGATGATTCTGCAGGCAATTGAAGCCTTGAATGACAAGAATGGTTCGAACAAATCCTCCATCTCGAAATATATTGAATCAACCTATGGGGAAGTGCCGGCCGGGCACAATACCCTCCTCTCTCACCACCTCAGCAAGATGAAAGATAATGGGGAGCTGGTGTTCTGGAAAAACAACTACACAAAGCCAGATCCCAATGCACCTCCGAGGAGGGGGCGTGGCAGGCCGCCAAAGCCCAAGGATCCATTGTCCCCGGACACCACCTTGACCTCACCAAAGGGTAGGGGCCGCCCGCCTAAGGACCCGGAAGCACCCCCAAAGCCTCCCAAGGTTAAGGTGTCTTCAGGGAGTGGGAAGCCGAGAGGGCGGCCAAGGAAGATGGCAAAGCCTACCGGAGGTTTGAGTGGCTCGACGGCAGTGGAAGAGACAATGCCGGTGAGGCCAAGGGGTAGGCCTCCAAAGGCGAAGGATACATTGAGTGCTGGGGTTAGTGTTGGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:0080050 GO:0097159 GO:1901363 GO:2000014 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

184

Amino Acids

19.66

Weight (kDa)

10.21

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	13 - 73	2.2e-12	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	275, 337, 341, 415
AclWI	GGATC	3 cut(s)	233, 284, 297
AcoI	YGGCCR	3 cut(s)	3, 147, 416
AcuI	CTGAAG	2 cut(s)	30, 375
AfiI	CCNNNNNNNGG	3 cut(s)	260, 346, 443
AgsI	TTSAA	3 cut(s)	71, 79, 125
AloI	GAACNNNNNNTCC	4 cut(s)	89, 121, 194, 226
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	3 cut(s)	233, 284, 297
AoxI	GGCC	7 cut(s)	3, 147, 272, 334, 416, 488, 500
AspS9I	GGNCC	2 cut(s)	334, 349
AsuC2I	CCSGG	3 cut(s)	151, 302, 353
AsuHPI	GGTGA	3 cut(s)	164, 312, 496
AsuII	TTCGAA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	349
AxyI	CCTNAGG	1 cut(s)	345
BaeGI	GKGCMC	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	381
BbvCI	CCTCAGC	1 cut(s)	179
BccI	CCATC	3 cut(s)	37, 116, 421
BceAI	ACGGC	1 cut(s)	477
BciVI	GTATCC	1 cut(s)	511
BcnI	CCSGG	3 cut(s)	151, 302, 353
BcoDI	GTCTC	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	511
BglI	GCCNNNNNGGC	3 cut(s)	151, 412, 487
BisI	GCNGC	3 cut(s)	275, 337, 416
BlsI	GCNGC	3 cut(s)	276, 338, 417
Bme1390I	CCNGG	3 cut(s)	151, 302, 353
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	334, 349
BmiI	GGNNCC	3 cut(s)	291, 335, 351
BmrFI	CCNGG	3 cut(s)	151, 302, 353
BpiI	GAAGAC	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	95
BpuMI	CCSGG	3 cut(s)	151, 302, 353
BsaJI	CCNNGG	6 cut(s)	254, 285, 300, 375, 419, 491
BsaWI	WCCGGW	1 cut(s)	440
BsaXI	ACNNNNNCTCC	6 cut(s)	89, 119, 194, 224, 250, 280
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 346, 443
Bse118I	RCCGGY	2 cut(s)	145, 481
Bse21I	CCTNAGG	1 cut(s)	345
BseDI	CCNNGG	6 cut(s)	254, 285, 300, 375, 419, 491
BseLI	CCNNNNNNNGG	3 cut(s)	260, 346, 443
BseMII	CTCAG	2 cut(s)	62, 193
BseRI	GAGGAG	2 cut(s)	155, 271
BseSI	GKGCMC	1 cut(s)	156
BseX3I	CGGCCG	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	530
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	7 cut(s)	5, 149, 274, 336, 418, 490, 502
BsiEI	CGRYCG	1 cut(s)	150
BsiSI	CCGG	6 cut(s)	146, 150, 302, 353, 441, 482
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	3 cut(s)	260, 346, 443
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	7 cut(s)	5, 149, 274, 336, 418, 490, 502
Bsp119I	TTCGAA	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	238, 289
BspACI	CCGC	4 cut(s)	275, 337, 341, 415
BspANI	GGCC	7 cut(s)	5, 149, 274, 336, 418, 490, 502
BspCNI	CTCAG	2 cut(s)	61, 192
BspLI	GGNNCC	3 cut(s)	291, 335, 351
BspMAI	CTGCAG	1 cut(s)	63
BspPI	GGATC	3 cut(s)	233, 284, 297
BspT104I	TTCGAA	1 cut(s)	95
BsrFI	RCCGGY	2 cut(s)	145, 481
BssAI	RCCGGY	2 cut(s)	145, 481
BssECI	CCNNGG	6 cut(s)	254, 285, 300, 375, 419, 491
BssMI	GATC	2 cut(s)	238, 289
BssT1I	CCWWGG	4 cut(s)	285, 375, 419, 491
Bst6I	CTCTTC	2 cut(s)	6, 465
BstBI	TTCGAA	1 cut(s)	95
BstC8I	GCNNGC	4 cut(s)	63, 147, 272, 341
BstDEI	CTNAG	3 cut(s)	48, 179, 345
BstENI	CCTNNNNNAGG	1 cut(s)	441
BstKTI	GATC	2 cut(s)	241, 292
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	2 cut(s)	238, 289
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 151, 271, 280, 412, 487
BstSCI	CCNGG	3 cut(s)	149, 300, 351
BstSFI	CTRYAG	1 cut(s)	59
BstSLI	GKGCMC	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	2 cut(s)	238, 289
BstYI	RGATCY	2 cut(s)	238, 289
BstZI	CGGCCG	1 cut(s)	147
Bsu36I	CCTNAGG	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	511
BsuRI	GGCC	7 cut(s)	5, 149, 274, 336, 418, 490, 502
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	6, 471
Cac8I	GCNNGC	4 cut(s)	63, 147, 272, 341
Cfr10I	RCCGGY	2 cut(s)	145, 481
Cfr13I	GGNCC	2 cut(s)	334, 349
DdeI	CTNAG	3 cut(s)	48, 179, 345
DpnI	GATC	2 cut(s)	240, 291
DpnII	GATC	2 cut(s)	238, 289
EaeI	YGGCCR	3 cut(s)	3, 147, 416
EagI	CGGCCG	1 cut(s)	147
Eam1104I	CTCTTC	2 cut(s)	6, 465
EarI	CTCTTC	2 cut(s)	6, 465
EclXI	CGGCCG	1 cut(s)	147
Eco130I	CCWWGG	4 cut(s)	285, 375, 419, 491
Eco147I	AGGCCT	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	349
Eco52I	CGGCCG	1 cut(s)	147
Eco57I	CTGAAG	2 cut(s)	30, 375
Eco81I	CCTNAGG	1 cut(s)	345
EcoNI	CCTNNNNNAGG	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	349
EcoT14I	CCWWGG	4 cut(s)	285, 375, 419, 491
ErhI	CCWWGG	4 cut(s)	285, 375, 419, 491
FaiI	YATR	2 cut(s)	120, 135
FaqI	GGGAC	1 cut(s)	283
FauI	CCCGC	1 cut(s)	348
Fnu4HI	GCNGC	3 cut(s)	275, 337, 416
Fsp4HI	GCNGC	3 cut(s)	275, 337, 416
GluI	GCNGC	3 cut(s)	275, 337, 416
GsaI	CCCAGC	1 cut(s)	534
HaeIII	GGCC	7 cut(s)	5, 149, 274, 336, 418, 490, 502
HapII	CCGG	6 cut(s)	146, 150, 302, 353, 441, 482
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	2 cut(s)	55, 125
HpaI	GTTAAC	1 cut(s)	19
HpaII	CCGG	6 cut(s)	146, 150, 302, 353, 441, 482
HphI	GGTGA	3 cut(s)	164, 312, 496
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	51, 255
Hpy188III	TCNNGA	2 cut(s)	112, 214
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	1 cut(s)	463
HpyAV	CCTTC	1 cut(s)	508
HpyCH4V	TGCA	2 cut(s)	61, 248
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 151, 271, 280, 412, 487
HpyF3I	CTNAG	3 cut(s)	48, 179, 345
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
KspAI	GTTAAC	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	238, 289
LmnI	GCTCC	1 cut(s)	202
MalI	GATC	2 cut(s)	240, 291
MboI	GATC	2 cut(s)	238, 289
MboII	GAAGA	4 cut(s)	23, 381, 436, 482
MfeI	CAATTG	1 cut(s)	66
MflI	RGATCY	2 cut(s)	238, 289
MhlI	GDGCHC	1 cut(s)	156
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	66
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	18, 381
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	6 cut(s)	146, 150, 302, 353, 441, 482
MspR9I	CCNGG	3 cut(s)	151, 302, 353
MunI	CAATTG	1 cut(s)	66
MwoI	GCNNNNNNNGC	6 cut(s)	71, 151, 271, 280, 412, 487
NaeI	GCCGGC	1 cut(s)	147
NciI	CCSGG	3 cut(s)	151, 302, 353
NdeII	GATC	2 cut(s)	238, 289
NgoMIV	GCCGGC	1 cut(s)	145
NlaIV	GGNNCC	3 cut(s)	291, 335, 351
NmeAIII	GCCGAG	1 cut(s)	432
NspV	TTCGAA	1 cut(s)	95
PceI	AGGCCT	1 cut(s)	502
PdiI	GCCGGC	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	55, 125
PkrI	GCNGC	3 cut(s)	276, 338, 417
PpuMI	RGGWCCY	1 cut(s)	349
Psp5II	RGGWCCY	1 cut(s)	349
PspFI	CCCAGC	1 cut(s)	530
PspN4I	GGNNCC	3 cut(s)	291, 335, 351
PspPI	GGNCC	2 cut(s)	334, 349
PspPPI	RGGWCCY	1 cut(s)	349
PstI	CTGCAG	1 cut(s)	63
PsuI	RGATCY	2 cut(s)	238, 289
SaqAI	TTAA	2 cut(s)	18, 381
SatI	GCNGC	3 cut(s)	275, 337, 416
Sau3AI	GATC	2 cut(s)	238, 289
Sau96I	GGNCC	2 cut(s)	334, 349
ScrFI	CCNGG	3 cut(s)	151, 302, 353
SduI	GDGCHC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	59
SfuI	TTCGAA	1 cut(s)	95
SinI	GGWCC	1 cut(s)	349
Sse9I	AATT	1 cut(s)	66
SseBI	AGGCCT	1 cut(s)	502
SsiI	CCGC	4 cut(s)	275, 337, 341, 415
StuI	AGGCCT	1 cut(s)	502
StyD4I	CCNGG	3 cut(s)	149, 300, 351
StyI	CCWWGG	4 cut(s)	285, 375, 419, 491
TaqI	TCGA	3 cut(s)	95, 113, 458
TasI	AATT	1 cut(s)	66
TauI	GCSGC	3 cut(s)	277, 339, 418
TfiI	GAWTC	2 cut(s)	55, 125
Tru1I	TTAA	2 cut(s)	18, 381
Tru9I	TTAA	2 cut(s)	18, 381
TscAI	CASTG	2 cut(s)	13, 471
TspDTI	ATGAA	1 cut(s)	203
TspRI	CASTG	2 cut(s)	13, 471
VpaK11BI	GGWCC	1 cut(s)	349
XagI	CCTNNNNNAGG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.