RchiOBHm_Chr7g0198631

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004535
Physical Location & Seq
Forward (+)
16586150 .. 16586926
777 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 585 bp
ATGGGGAATGATCTCATTTCACGTATATTCATGAGCTTAAGTGTCATGGATGTCATTCGCTCATGCGGAAGTGTTTGCTGCTCTTGGAGGGAAGTTTCTTCCAATACCAGACTTTGGAAGACTATAGACTTAACTAAGGTGGACTCAGAAATATTTCTTCAATCTAGGTCAGGCCATATTGCTATGGGAATTTTGAATGCTGTTTTCAGTCGTGGTAAAGATGTTACTTGCCTGAGTTTAAAAGTGGCTGGATTTGAAGCTGCTTTGAAGAACTGGCCACAACTTGAGTCACTGACCATTCCATGTGACTTTCTTGTGGAAATCATGGAGGTGATTGGTAAGCACTGTAATAAATCCGCGGAGATGAAATTGATGTGTGATTTTTATGAGGAGTACGCAGAGGCAGTTGCTGCCTACATACCAAACTTAAAGGTCTTGAGCCTTAGGTGCGCTGAAGTGTCCAGGGGAGCTGTGCTTCACATACTGAATCAAATGAATCATTTGCAAGTGCTCAATTTATCTCACTCCTACATTGTGGATCACGCTCCAACACCAAACCGCCACATATATAGTAGTACTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

194

Amino Acids

21.71

Weight (kDa)

6.64

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 4 - 44 9.5e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 114
AccII CGCG 1 cut(s) 359
AciI CCGC 4 cut(s) 66, 357, 359, 559
AclWI GGATC 1 cut(s) 546
AcoI YGGCCR 1 cut(s) 275
AcsI RAATTY 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 474
AfaI GTAC 2 cut(s) 395, 577
AfiI CCNNNNNNNGG 1 cut(s) 114
AflII CTTAAG 1 cut(s) 37
AgsI TTSAA 4 cut(s) 161, 196, 257, 268
AjnI CCWGG 1 cut(s) 461
AluBI AGCT 3 cut(s) 36, 260, 470
AluI AGCT 3 cut(s) 36, 260, 470
Alw21I GWGCWC 1 cut(s) 513
AlwI GGATC 1 cut(s) 546
AlwNI CAGNNNCTG 1 cut(s) 410
AoxI GGCC 2 cut(s) 172, 275
ApeKI GCWGC 3 cut(s) 78, 260, 410
ApoI RAATTY 1 cut(s) 189
Asp700I GAANNNNTTC 1 cut(s) 153
AspLEI GCGC 1 cut(s) 452
AsuHPI GGTGA 1 cut(s) 343
AxyI CCTNAGG 1 cut(s) 443
BalI TGGCCA 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 513
BbvI GCAGC 3 cut(s) 65, 247, 397
BciT130I CCWGG 1 cut(s) 463
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 123
BfrI CTTAAG 1 cut(s) 37
BisI GCNGC 3 cut(s) 79, 261, 411
BlsI GCNGC 3 cut(s) 80, 262, 412
BmcAI AGTACT 1 cut(s) 577
Bme1390I CCNGG 1 cut(s) 463
BmrFI CCNGG 1 cut(s) 463
BpiI GAAGAC 1 cut(s) 125
BpuEI CTTGAG 2 cut(s) 305, 457
BsaAI YACGTR 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 357, 462
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 278
Bse21I CCTNAGG 1 cut(s) 443
BseBI CCWGG 1 cut(s) 463
BseDI CCNNGG 2 cut(s) 357, 462
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 159, 224
BseNI ACTGG 1 cut(s) 278
BseRI GAGGAG 1 cut(s) 404
BseXI GCAGC 3 cut(s) 65, 247, 397
Bsh1236I CGCG 1 cut(s) 359
BshFI GGCC 2 cut(s) 174, 277
BsiHKAI GWGCWC 1 cut(s) 513
BslI CCNNNNNNNGG 1 cut(s) 114
BsmI GAATGC 1 cut(s) 202
BsnI GGCC 2 cut(s) 174, 277
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 2 cut(s) 10, 538
BspACI CCGC 4 cut(s) 66, 357, 359, 559
BspANI GGCC 2 cut(s) 174, 277
BspCNI CTCAG 2 cut(s) 158, 225
BspFNI CGCG 1 cut(s) 359
BspHI TCATGA 1 cut(s) 30
BspPI GGATC 1 cut(s) 546
BspTI CTTAAG 1 cut(s) 37
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 357, 462
BssMI GATC 2 cut(s) 10, 538
Bst2UI CCWGG 1 cut(s) 463
Bst4CI ACNGT 1 cut(s) 347
BstAFI CTTAAG 1 cut(s) 37
BstAPI GCANNNNNTGC 1 cut(s) 410
BstBAI YACGTR 1 cut(s) 23
BstDEI CTNAG 4 cut(s) 135, 145, 233, 443
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 55
BstFNI CGCG 1 cut(s) 359
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 2 cut(s) 13, 541
BstMBI GATC 2 cut(s) 10, 538
BstMWI GCNNNNNNNGC 2 cut(s) 410, 447
BstNI CCWGG 1 cut(s) 463
BstSCI CCNGG 1 cut(s) 461
BstSFI CTRYAG 1 cut(s) 123
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 3 cut(s) 65, 247, 397
BstV2I GAAGAC 1 cut(s) 125
Bsu36I CCTNAGG 1 cut(s) 443
BsuRI GGCC 2 cut(s) 174, 277
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 2 cut(s) 290, 343
CaiI CAGNNNCTG 1 cut(s) 410
CciI TCATGA 1 cut(s) 30
CfoI GCGC 1 cut(s) 452
Cfr42I CCGCGG 1 cut(s) 360
Csp6I GTAC 2 cut(s) 394, 576
CviAII CATG 5 cut(s) 31, 46, 63, 303, 325
CviJI RGCY 7 cut(s) 36, 174, 248, 260, 277, 441, 470
CviKI_1 RGCY 7 cut(s) 36, 174, 248, 260, 277, 441, 470
CviQI GTAC 2 cut(s) 394, 576
DdeI CTNAG 4 cut(s) 135, 145, 233, 443
DpnI GATC 2 cut(s) 12, 540
DpnII GATC 2 cut(s) 10, 538
DraI TTTAAA 1 cut(s) 240
EaeI YGGCCR 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 474
Eco81I CCTNAGG 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 461
FaeI CATG 5 cut(s) 34, 49, 66, 306, 328
FatI CATG 5 cut(s) 30, 45, 62, 302, 324
Fnu4HI GCNGC 3 cut(s) 79, 261, 411
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 79, 261, 411
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 451
GluI GCNGC 3 cut(s) 79, 261, 411
HaeIII GGCC 2 cut(s) 174, 277
HhaI GCGC 1 cut(s) 452
Hin1II CATG 5 cut(s) 34, 49, 66, 306, 328
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HinfI GANTC 4 cut(s) 143, 287, 487, 496
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 2 cut(s) 31, 436
Hpy8I GTNNAC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 1 cut(s) 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 447
HpyF3I CTNAG 4 cut(s) 135, 145, 233, 443
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 5 cut(s) 34, 49, 66, 306, 328
HspAI GCGC 1 cut(s) 450
KspI CCGCGG 1 cut(s) 360
Kzo9I GATC 2 cut(s) 10, 538
LmnI GCTCC 2 cut(s) 467, 550
LpnPI CCDG 7 cut(s) 121, 156, 234, 245, 259, 448, 475
Lsp1109I GCAGC 3 cut(s) 65, 247, 397
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 3 cut(s) 223, 288, 305
MalI GATC 2 cut(s) 12, 540
MboI GATC 2 cut(s) 10, 538
MboII GAAGA 4 cut(s) 90, 130, 149, 280
MhlI GDGCHC 1 cut(s) 513
MlsI TGGCCA 1 cut(s) 277
MluCI AATT 3 cut(s) 189, 368, 514
MluNI TGGCCA 1 cut(s) 277
MlyI GAGTC 2 cut(s) 137, 296
MmeI TCCRAC 1 cut(s) 572
MnlI CCTC 4 cut(s) 81, 322, 382, 394
Mox20I TGGCCA 1 cut(s) 277
MroXI GAANNNNTTC 1 cut(s) 153
MscI TGGCCA 1 cut(s) 277
MseI TTAA 4 cut(s) 38, 131, 239, 428
MslI CAYNNNNRTG 1 cut(s) 329
Msp20I TGGCCA 1 cut(s) 277
MspA1I CMGCKG 1 cut(s) 359
MspCI CTTAAG 1 cut(s) 37
MspR9I CCNGG 1 cut(s) 463
Mva1269I GAATGC 1 cut(s) 202
MvaI CCWGG 1 cut(s) 463
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 2 cut(s) 410, 447
NdeII GATC 2 cut(s) 10, 538
NlaIII CATG 5 cut(s) 34, 49, 66, 306, 328
NmuCI GTSAC 2 cut(s) 288, 305
PagI TCATGA 1 cut(s) 30
PctI GAATGC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 2 cut(s) 487, 496
PflMI CCANNNNNTGG 1 cut(s) 114
PkrI GCNGC 3 cut(s) 80, 262, 412
PleI GAGTC 2 cut(s) 137, 295
PpsI GAGTC 2 cut(s) 137, 295
Ppu21I YACGTR 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 461
PspGI CCWGG 1 cut(s) 461
PstNI CAGNNNCTG 1 cut(s) 410
RsaI GTAC 2 cut(s) 395, 577
RsaNI GTAC 2 cut(s) 394, 576
RseI CAYNNNNRTG 1 cut(s) 329
SacII CCGCGG 1 cut(s) 360
SaqAI TTAA 4 cut(s) 38, 131, 239, 428
SatI GCNGC 3 cut(s) 79, 261, 411
Sau3AI GATC 2 cut(s) 10, 538
ScaI AGTACT 1 cut(s) 577
SchI GAGTC 2 cut(s) 137, 296
ScrFI CCNGG 1 cut(s) 463
SduI GDGCHC 1 cut(s) 513
SetI ASST 9 cut(s) 25, 38, 141, 170, 262, 333, 435, 449, 472
SfcI CTRYAG 1 cut(s) 123
Sfr303I CCGCGG 1 cut(s) 360
SgrBI CCGCGG 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 3 cut(s) 37, 284, 436
SmoI CTYRAG 3 cut(s) 37, 284, 436
Sse9I AATT 3 cut(s) 189, 368, 514
SsiI CCGC 4 cut(s) 66, 357, 359, 559
SspI AATATT 1 cut(s) 153
SspMI CTAG 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 461
TaaI ACNGT 1 cut(s) 347
TaiI ACGT 1 cut(s) 25
TasI AATT 3 cut(s) 189, 368, 514
TatI WGTACW 1 cut(s) 575
TfiI GAWTC 2 cut(s) 487, 496
Tru1I TTAA 4 cut(s) 38, 131, 239, 428
Tru9I TTAA 4 cut(s) 38, 131, 239, 428
TscAI CASTG 2 cut(s) 297, 350
TseFI GTSAC 2 cut(s) 288, 305
TseI GCWGC 3 cut(s) 78, 260, 410
Tsp45I GTSAC 2 cut(s) 288, 305
TspDTI ATGAA 3 cut(s) 19, 380, 509
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 2 cut(s) 297, 350
Van91I CCANNNNNTGG 1 cut(s) 114
Vha464I CTTAAG 1 cut(s) 37
XapI RAATTY 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 1 cut(s) 165
ZrmI AGTACT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.