Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003449

Physical Location & Seq

Genomic Coordinates Forward (+)

65836856 .. 65839741

Gene Structure 2886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTATTCCTTGACGGTGAAGCCCTCTTGTCTCCTTGTACCAAAATCTTCTTCTTCATCTGCTCATTCTTGGGTTGGGTCTTCTTCTTCTACAGTTAGTTTCCCAATAAAGACCAAAAGCAGGGGCAGCAGAATCAGTTTGAGAATTGCGGCTTACGATTCTTCCAAGAACAACGATGGGCTCAACTCCGGTGATTCCAAACCTCCCAACGGCACTGTGCCAAAGAGCAGGAGGGATATACTATTGGAGTATGTAAAAAATGTGCAGCCTGAATTTATGGAGCTGCTTGTAAAGAGAGCACCCCACCCCAGCAGGTATTTATTTATTTATGTCTTTTTGGCAAGCAGCCGCGCGATTTTAATGTTGATGAGGAGGATAACTTACTTGCTCGTGCAAGGATTGAGAGTTGCCGAAAATCTTGCACAACTTATGTACAGTATCATGATGACTGGATATATGTTTCAAAATGCACAGTACAGGTTGGAACTGCAGCAAAGTTTAGAGCCAGTTGCTCTTCCCCAAGGGCAAGAGAAAAAACCTGATCCTAGAAGCATTGATGCACCAGAGTATGCACCTGGTACACAGAAGTCGAATGTGTCAGGGGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCTAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTAGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTCGAGCCCCAAAATTTAAAGGAGTTGACTAGTACTGCTGGAGATGATGTTGTGGTTGCAATGGATACATTCATCAAGCGGCTTTTGGCTGTTTCAGATCCTAGCCAAATGAAGGCTAGTGTAACATCAACAACTGCAGCAGAACTTGCAAAGCTGCTTTATTGGCTAATGGTAGTCGGATATAGTCTTCGCAACATTGAAGTTCGTTTTGATATGGAACGAGTACTTGGGAATCCTCCAAAGCTCGCAGAATTGCCTCCAGGTGAAAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

343

Amino Acids

38.24

Weight (kDa)

8.89

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	137 - 167	2.8e-07	Protein of unknown function (DUF760)
DUF760	PF05542	245 - 328	2.8e-20	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63610 AT1G63610 AT1G63610
fragaria_vesca	FvH4_2g37520 FvH4_2g37520 FvH4_2g37520 FvH4_2g37520
malus_domestica	MD08G1002600.v1.1
prunus_persica	Prupe.1G354700_v2.0.a1 Prupe.1G354700_v2.0.a1
pyrus_communis	pycom08g00220
rosa_chinensis	RchiOBHm_Chr5g0060651 RchiOBHm_Chr6g0270451 RchiOBHm_Chr6g0304221
rosa_laevigata	RLG00000011005 RLG00000013791 RLG00000035377
rosa_multiflora	Rmu_sc0009479.1_g000009 Rmu_sc0023816.1_g000001 Rmu_ssc0000218.1_g000014
rosa_roxburghii	Rroxscaffold_1G00020170 Rroxscaffold_7G00163960 Rroxscaffold_7G00197920
rosa_rugosa	Rorug06G0328800 Rorug06G0328900
rosa_samantha	Rh5CG432600 Rh6AG442700 Rh6BG177300 Rh6BG460000 Rh6CG173100 Rh6CG455100 Rh6DG165500 Rh6DG442100
rosa_wichuraiana	Rw5G037250 Rw6G014760 Rw6G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	303
AccII	CGCG	2 cut(s)	351, 353
AciI	CCGC	3 cut(s)	149, 349, 835
AclWI	GGATC	2 cut(s)	536, 848
AcsI	RAATTY	2 cut(s)	272, 769
AfaI	GTAC	7 cut(s)	39, 434, 476, 580, 659, 790, 981
AfiI	CCNNNNNNNGG	3 cut(s)	120, 209, 868
AgsI	TTSAA	4 cut(s)	464, 674, 694, 956
AhlI	ACTAGT	1 cut(s)	785
AjnI	CCWGG	2 cut(s)	574, 1015
AjuI	GAANNNNNNNTTGG	4 cut(s)	34, 66, 966, 998
AluBI	AGCT	3 cut(s)	283, 910, 1000
AluI	AGCT	3 cut(s)	283, 910, 1000
Alw21I	GWGCWC	1 cut(s)	301
Alw26I	GTCTC	2 cut(s)	35, 759
AlwI	GGATC	2 cut(s)	536, 848
Ama87I	CYCGRG	1 cut(s)	758
AoxI	GGCC	1 cut(s)	631
ApeKI	GCWGC	7 cut(s)	126, 265, 283, 345, 490, 893, 910
ApoI	RAATTY	2 cut(s)	272, 769
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	632
AsuHPI	GGTGA	3 cut(s)	28, 203, 1031
AvaI	CYCGRG	1 cut(s)	758
BanII	GRGCYC	2 cut(s)	183, 765
BauI	CACGAG	1 cut(s)	389
BbsI	GAAGAC	2 cut(s)	72, 935
Bbv12I	GWGCWC	1 cut(s)	301
BbvI	GCAGC	7 cut(s)	138, 270, 277, 357, 502, 897, 905
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	2 cut(s)	576, 1017
BciVI	GTATCC	1 cut(s)	814
BcoDI	GTCTC	2 cut(s)	35, 759
BcuI	ACTAGT	1 cut(s)	785
BfaI	CTAG	4 cut(s)	546, 786, 858, 873
BfmI	CTRYAG	3 cut(s)	90, 488, 891
BfuAI	ACCTGC	1 cut(s)	303
BfuI	GTATCC	1 cut(s)	814
BmcAI	AGTACT	2 cut(s)	790, 981
Bme1390I	CCNGG	2 cut(s)	576, 1017
BmeT110I	CYCGRG	1 cut(s)	758
BmgT120I	GGNCC	1 cut(s)	632
BmrFI	CCNGG	2 cut(s)	576, 1017
BmsI	GCATC	2 cut(s)	547, 637
BpiI	GAAGAC	2 cut(s)	72, 935
BpmI	CTGGAG	2 cut(s)	816, 999
BpuEI	CTTGAG	1 cut(s)	734
BsaJI	CCNNGG	1 cut(s)	520
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 209, 868
Bse1I	ACTGG	2 cut(s)	454, 506
Bse3DI	GCAATG	1 cut(s)	822
BseBI	CCWGG	2 cut(s)	576, 1017
BseDI	CCNNGG	1 cut(s)	520
BseLI	CCNNNNNNNGG	3 cut(s)	120, 209, 868
BseMI	GCAATG	1 cut(s)	822
BseMII	CTCAG	1 cut(s)	627
BseNI	ACTGG	2 cut(s)	454, 506
BseRI	GAGGAG	1 cut(s)	385
BseXI	GCAGC	7 cut(s)	138, 270, 277, 357, 502, 897, 905
BseYI	CCCAGC	1 cut(s)	308
BsgI	GTGCAG	1 cut(s)	284
Bsh1236I	CGCG	2 cut(s)	351, 353
BshFI	GGCC	1 cut(s)	633
BsiHKAI	GWGCWC	1 cut(s)	301
BsiHKCI	CYCGRG	1 cut(s)	758
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	3 cut(s)	120, 209, 868
BsmAI	GTCTC	2 cut(s)	35, 759
BsnI	GGCC	1 cut(s)	633
BsoBI	CYCGRG	1 cut(s)	758
Bsp1286I	GDGCHC	3 cut(s)	183, 301, 765
Bsp1407I	TGTACA	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	541, 853
BspACI	CCGC	3 cut(s)	149, 349, 835
BspANI	GGCC	1 cut(s)	633
BspCNI	CTCAG	1 cut(s)	628
BspFNI	CGCG	2 cut(s)	351, 353
BspHI	TCATGA	1 cut(s)	441
BspMAI	CTGCAG	2 cut(s)	492, 895
BspMI	ACCTGC	1 cut(s)	303
BspPI	GGATC	2 cut(s)	536, 848
BspQI	GCTCTTC	1 cut(s)	519
BsrDI	GCAATG	1 cut(s)	822
BsrGI	TGTACA	1 cut(s)	432
BsrI	ACTGG	2 cut(s)	454, 506
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	2 cut(s)	541, 853
BssSI	CACGAG	1 cut(s)	389
BssT1I	CCWWGG	1 cut(s)	520
Bst2BI	CACGAG	1 cut(s)	389
Bst2UI	CCWGG	2 cut(s)	576, 1017
Bst4CI	ACNGT	5 cut(s)	16, 94, 217, 437, 474
Bst6I	CTCTTC	1 cut(s)	519
BstAPI	GCANNNNNTGC	1 cut(s)	902
BstAUI	TGTACA	1 cut(s)	432
BstC8I	GCNNGC	2 cut(s)	343, 1002
BstDEI	CTNAG	2 cut(s)	636, 651
BstFNI	CGCG	2 cut(s)	351, 353
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	2 cut(s)	544, 856
BstMAI	GTCTC	2 cut(s)	35, 759
BstMBI	GATC	2 cut(s)	541, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 902, 919
BstNI	CCWGG	2 cut(s)	576, 1017
BstSCI	CCNGG	2 cut(s)	574, 1015
BstSFI	CTRYAG	3 cut(s)	90, 488, 891
BstUI	CGCG	2 cut(s)	351, 353
BstV1I	GCAGC	7 cut(s)	138, 270, 277, 357, 502, 897, 905
BstV2I	GAAGAC	2 cut(s)	72, 935
BstX2I	RGATCY	1 cut(s)	853
BstYI	RGATCY	1 cut(s)	853
BsuI	GTATCC	1 cut(s)	814
BsuRI	GGCC	1 cut(s)	633
BtsIMutI	CAGTG	1 cut(s)	213
BveI	ACCTGC	1 cut(s)	303
Cac8I	GCNNGC	2 cut(s)	343, 1002
CciI	TCATGA	1 cut(s)	441
CfoI	GCGC	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	632
CsiI	ACCWGGT	1 cut(s)	574
Csp6I	GTAC	7 cut(s)	38, 433, 475, 579, 658, 789, 980
CviAII	CATG	1 cut(s)	442
CviQI	GTAC	7 cut(s)	38, 433, 475, 579, 658, 789, 980
DdeI	CTNAG	2 cut(s)	636, 651
DpnI	GATC	2 cut(s)	543, 855
DpnII	GATC	2 cut(s)	541, 853
DraI	TTTAAA	1 cut(s)	774
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	520
Eco24I	GRGCYC	2 cut(s)	183, 765
Eco88I	CYCGRG	1 cut(s)	758
EcoRII	CCWGG	2 cut(s)	574, 1015
EcoT14I	CCWWGG	1 cut(s)	520
EcoT38I	GRGCYC	2 cut(s)	183, 765
ErhI	CCWWGG	1 cut(s)	520
FaeI	CATG	1 cut(s)	445
FatI	CATG	1 cut(s)	441
FriOI	GRGCYC	2 cut(s)	183, 765
FspBI	CTAG	4 cut(s)	546, 786, 858, 873
GlaI	GCGC	1 cut(s)	352
GsaI	CCCAGC	1 cut(s)	312
GsuI	CTGGAG	2 cut(s)	816, 999
HaeIII	GGCC	1 cut(s)	633
HapII	CCGG	1 cut(s)	189
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	1 cut(s)	445
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HincII	GTYRAC	1 cut(s)	783
HindII	GTYRAC	1 cut(s)	783
HinfI	GANTC	4 cut(s)	132, 158, 194, 988
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	3 cut(s)	28, 203, 1031
Hpy166II	GTNNAC	2 cut(s)	581, 783
Hpy188I	TCNGA	2 cut(s)	853, 935
Hpy188III	TCNNGA	2 cut(s)	442, 758
Hpy8I	GTNNAC	2 cut(s)	581, 783
HpyAV	CCTTC	1 cut(s)	862
HpyCH4III	ACNGT	5 cut(s)	16, 94, 217, 437, 474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 902, 919
HpyF3I	CTNAG	2 cut(s)	636, 651
Hsp92II	CATG	1 cut(s)	445
HspAI	GCGC	1 cut(s)	351
Kzo9I	GATC	2 cut(s)	541, 853
LguI	GCTCTTC	1 cut(s)	519
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	7 cut(s)	138, 270, 277, 357, 502, 897, 905
LweI	GCATC	2 cut(s)	547, 637
MabI	ACCWGGT	1 cut(s)	574
MaeI	CTAG	4 cut(s)	546, 786, 858, 873
MaeIII	GTNAC	2 cut(s)	666, 877
MalI	GATC	2 cut(s)	543, 855
MboI	GATC	2 cut(s)	541, 853
MboII	GAAGA	9 cut(s)	39, 42, 45, 72, 75, 78, 153, 506, 935
MflI	RGATCY	1 cut(s)	853
MhlI	GDGCHC	3 cut(s)	183, 301, 765
MluCI	AATT	6 cut(s)	144, 272, 689, 734, 769, 1007
MmeI	TCCRAC	3 cut(s)	462, 720, 913
MnlI	CCTC	8 cut(s)	34, 213, 225, 363, 366, 679, 1002, 1023
MseI	TTAA	3 cut(s)	359, 773, 1030
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	2 cut(s)	576, 1017
MvaI	CCWGG	2 cut(s)	576, 1017
MvnI	CGCG	2 cut(s)	351, 353
MwoI	GCNNNNNNNGC	3 cut(s)	126, 902, 919
NdeII	GATC	2 cut(s)	541, 853
NlaIII	CATG	1 cut(s)	445
PaeR7I	CTCGAG	1 cut(s)	758
PagI	TCATGA	1 cut(s)	441
PciSI	GCTCTTC	1 cut(s)	519
PfeI	GAWTC	4 cut(s)	132, 158, 194, 988
Psp6I	CCWGG	2 cut(s)	574, 1015
PspFI	CCCAGC	1 cut(s)	308
PspGI	CCWGG	2 cut(s)	574, 1015
PspPI	GGNCC	1 cut(s)	632
PstI	CTGCAG	2 cut(s)	492, 895
PsuI	RGATCY	1 cut(s)	853
RsaI	GTAC	7 cut(s)	39, 434, 476, 580, 659, 790, 981
RsaNI	GTAC	7 cut(s)	38, 433, 475, 579, 658, 789, 980
SapI	GCTCTTC	1 cut(s)	519
SaqAI	TTAA	3 cut(s)	359, 773, 1030
Sau3AI	GATC	2 cut(s)	541, 853
Sau96I	GGNCC	1 cut(s)	632
ScaI	AGTACT	2 cut(s)	790, 981
ScrFI	CCNGG	2 cut(s)	576, 1017
SduI	GDGCHC	3 cut(s)	183, 301, 765
SexAI	ACCWGGT	1 cut(s)	574
SfaNI	GCATC	2 cut(s)	547, 637
SfcI	CTRYAG	3 cut(s)	90, 488, 891
Sfr274I	CTCGAG	1 cut(s)	758
SlaI	CTCGAG	1 cut(s)	758
SmlI	CTYRAG	2 cut(s)	749, 758
SmoI	CTYRAG	2 cut(s)	749, 758
SpeI	ACTAGT	1 cut(s)	785
Sse9I	AATT	6 cut(s)	144, 272, 689, 734, 769, 1007
SsiI	CCGC	3 cut(s)	149, 349, 835
SspMI	CTAG	4 cut(s)	546, 786, 858, 873
StyD4I	CCNGG	2 cut(s)	574, 1015
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	5 cut(s)	16, 94, 217, 437, 474
TaqI	TCGA	2 cut(s)	590, 759
TasI	AATT	6 cut(s)	144, 272, 689, 734, 769, 1007
TatI	WGTACW	5 cut(s)	432, 474, 657, 788, 979
TauI	GCSGC	3 cut(s)	152, 351, 838
TfiI	GAWTC	4 cut(s)	132, 158, 194, 988
Tru1I	TTAA	3 cut(s)	359, 773, 1030
Tru9I	TTAA	3 cut(s)	359, 773, 1030
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	7 cut(s)	126, 265, 283, 345, 490, 893, 910
TspDTI	ATGAA	5 cut(s)	45, 714, 747, 817, 881
TspRI	CASTG	1 cut(s)	220
XapI	RAATTY	2 cut(s)	272, 769
XhoI	CTCGAG	1 cut(s)	758
XspI	CTAG	4 cut(s)	546, 786, 858, 873
ZrmI	AGTACT	2 cut(s)	790, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.