Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001367

Physical Location & Seq

Genomic Coordinates Forward (+)

5169125 .. 5171445

Gene Structure 2321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGACCACCACCGCCTTTTCCTTTTCCTCACCTCCCTTTCAATTCCCCGTCCCCGATTTAATGGCCTCCGACTGCGCCCCCGACGACTCCTACTGCCCCTCCCCGGCCCAAAACCCGACTCCGACTCCGACTCTTCCCCCGGCCCAGCTCCTCAACCTCTCCTTCAACCAGGACCACGGCTGCTTCGCCGCCGGCACCGACCTCGGCTTCCGCATCTACAACTGCGACCCCTTCCGCGAGATCTTCCGCCGCGACTTCGGCCCACGCGGCGCCGTCGGGCTGGTCCAGATGCTCTTCCGCTGCAACATCCTCACCATCGTCGGCGGCGGCCCCGACCCCCTCTACTCGCCCAACAAGGTCATGATCTGGGACGACCACCAGTCCCGCTGCATCGGCGAGCTCTCCTTCCGCTCCGAGGTCAAAGCCGTCAAGCTCCGCCGCGACCGCATCGTCGTCGTTCTGGTCCAGAAGATCTTCGTCTACAATTTCGCCGATTTGAAGCTTCTCCACCAGATTGAGACCATCGCCAACCCCAAGGGACTCTGCGAGGTCTCGCACGTCGGCCCTCAGGCGGTGCTCGTCTGCCCGGGGCTCCAGAAAGGTCAAATTCGGGTCGAGCATTACGGGTCGAAGCGGACCAAGTTTATTATGGCCCACGATTCCAGGCTGGCCTGCTTCGCTCTCACGCAGGACGGCAGGTTGCTGGCTACGGCCAGCAGTAAAGGGACTTTGATCAGAGTTTTCAATACTCTGGATGGTTCATTGCTGCAAGAGGTAAGGAGAGGAGCAGATAGAGCAGAGATACATAGTCTTGCTTTCTCTGCTAGTGCCCAATGGCTAGCTGTCTCGAGTGACAAGGGAACTATCCATGTTTTCAATCTGAAGGTTGATTCAGGATCCTTGGGGAATATCAGTCCATCAGAATCCAGTCCTCCTCATCCATCAGGCGTTTCATCTCTCTCTTTCATGAAAGGTGTTCTGCCAAGGTATTTCAGCTCAGAATGGTCAGTGGCTAAATTTCACTTGCACGAAGGTTTGGAGTACATTGTTGCCTTCGGCCACCAGAAGAACACTGTCGTGGTTCTAGGCATGGATGGAAGCTTCTATCGATGTGAATTTGACCCTGTCAATGGAGGAGAAATGACTCAGCTTGAATATTATAATTTCTTGAAGCCAGAAGAAACCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

396

Amino Acids

43.76

Weight (kDa)

6.86

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PROPPIN	PF21032	52 - 308	2.5e-33	PROPPIN
Beta-prop_THOC3	PF25174	118 - 295	3.3e-13	THOC3 beta-propeller domain
WD40_Prp19	PF24814	119 - 295	3.7e-07	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	147 - 323	1.9e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	152 - 296	8.2e-08	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	199 - 304	2.2e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	212 - 297	7.3e-06	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	218 - 295	3.9e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62770 AT3G62770
fragaria_vesca	FvH4_2g25170 FvH4_6g06350 FvH4_6g06350 FvH4_6g06350 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370
malus_domestica	MD03G1283100.v1.1 MD04G1202000.v1.1 MD11G1303400.v1.1 MD12G1216000.v1.1 MD12G1216100.v1.1
prunus_persica	Prupe.6G322300_v2.0.a1 Prupe.8G256500_v2.0.a1
pyrus_communis	pycom03g22400 pycom04g17820 pycom11g26510 pycom12g20160
rosa_chinensis	RchiOBHm_Chr3g0455431 RchiOBHm_Chr3g0455461 RchiOBHm_Chr6g0293291
rosa_laevigata	RLG00000011961 RLG00000025360 RLG00000025363
rosa_multiflora	Rmu_sc0003728.1_g000001 Rmu_sc0008350.1_g000001 Rmu_ssc0000162.1_g000036
rosa_roxburghii	Rroxscaffold_6G00424260 Rroxscaffold_6G00424290 Rroxscaffold_7G00174280
rosa_rugosa	Rorug03G0007500 Rorug03G0007800 Rorug06G0234300
rosa_samantha	Rh2AG090700 Rh3AG066800 Rh3AG067200 Rh3BG069200 Rh3BG069500 Rh3CG067600 Rh3CG068000 Rh3DG069200 Rh3DG069500 Rh5BG179700 Rh6AG347100 Rh6BG354400 Rh6CG214700 Rh6DG204600
rosa_wichuraiana	Rw3G005280 Rw3G005310 Rw6G030210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1161
AasI	GACNNNNNNGTC	1 cut(s)	449
Acc36I	ACCTGC	1 cut(s)	687
AccB1I	GGYRCC	2 cut(s)	194, 269
AccBSI	CCGCTC	1 cut(s)	411
AccI	GTMKAC	1 cut(s)	480
AccII	CGCG	4 cut(s)	237, 252, 267, 441
AclWI	GGATC	2 cut(s)	891, 904
AcoI	YGGCCR	2 cut(s)	711, 1057
AcsI	RAATTY	3 cut(s)	606, 1016, 1115
AcuI	CTGAAG	1 cut(s)	902
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	1 cut(s)	1043
AfiI	CCNNNNNNNGG	4 cut(s)	103, 415, 571, 1130
AgsI	TTSAA	7 cut(s)	41, 166, 499, 745, 877, 1154, 1171
AhdI	GACNNNNNGTC	1 cut(s)	379
AjiI	CACGTC	1 cut(s)	559
AjnI	CCWGG	2 cut(s)	168, 662
AleI	CACNNNNGTG	1 cut(s)	1076
AluBI	AGCT	8 cut(s)	148, 400, 433, 502, 842, 996, 1101, 1150
AluI	AGCT	8 cut(s)	148, 400, 433, 502, 842, 996, 1101, 1150
Alw21I	GWGCWC	2 cut(s)	402, 579
Alw26I	GTCTC	3 cut(s)	512, 556, 850
AlwI	GGATC	2 cut(s)	891, 904
Ama87I	CYCGRG	2 cut(s)	586, 847
ApeKI	GCWGC	4 cut(s)	180, 300, 387, 766
ApoI	RAATTY	3 cut(s)	606, 1016, 1115
Asp700I	GAANNNNTTC	1 cut(s)	473
AspLEI	GCGC	2 cut(s)	77, 272
AsuC2I	CCSGG	4 cut(s)	104, 140, 587, 588
AsuHPI	GGTGA	2 cut(s)	21, 304
AsuNHI	GCTAGC	1 cut(s)	838
AvaI	CYCGRG	2 cut(s)	586, 847
AvaII	GGWCC	4 cut(s)	172, 283, 463, 636
AxyI	CCTNAGG	1 cut(s)	567
BaeGI	GKGCMC	1 cut(s)	832
BamHI	GGATCC	1 cut(s)	896
BanI	GGYRCC	2 cut(s)	194, 269
BanII	GRGCYC	2 cut(s)	402, 594
Bbv12I	GWGCWC	2 cut(s)	402, 579
BbvI	GCAGC	4 cut(s)	167, 287, 374, 753
BccI	CCATC	6 cut(s)	323, 530, 749, 925, 949, 1088
BceAI	ACGGC	5 cut(s)	193, 257, 410, 709, 726
BcgI	CGANNNNNNTGC	4 cut(s)	184, 218, 436, 470
BciT130I	CCWGG	2 cut(s)	170, 664
BclI	TGATCA	1 cut(s)	732
BcnI	CCSGG	4 cut(s)	104, 140, 587, 588
BcoDI	GTCTC	3 cut(s)	512, 556, 850
BfaI	CTAG	3 cut(s)	825, 839, 1085
BfoI	RGCGCY	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	687
BglI	GCCNNNNNGGC	1 cut(s)	267
BglII	AGATCT	2 cut(s)	240, 471
Bme1390I	CCNGG	6 cut(s)	104, 140, 170, 587, 588, 664
Bme18I	GGWCC	4 cut(s)	172, 283, 463, 636
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmeT110I	CYCGRG	2 cut(s)	586, 847
BmgBI	CACGTC	1 cut(s)	559
BmiI	GGNNCC	5 cut(s)	196, 271, 331, 593, 898
BmrFI	CCNGG	6 cut(s)	104, 140, 170, 587, 588, 664
BmsI	GCATC	4 cut(s)	222, 279, 399, 456
BmtI	GCTAGC	1 cut(s)	842
BpmI	CTGGAG	1 cut(s)	578
BpuMI	CCSGG	4 cut(s)	104, 140, 587, 588
Bsa29I	ATCGAT	1 cut(s)	1108
BsaHI	GRCGYC	1 cut(s)	270
BsaI	GGTCTC	2 cut(s)	512, 556
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 109, 113, 139
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 415, 571, 1130
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	379, 927
Bse21I	CCTNAGG	1 cut(s)	567
Bse3DI	GCAATG	1 cut(s)	761
BseBI	CCWGG	2 cut(s)	170, 664
BseCI	ATCGAT	1 cut(s)	1108
BseGI	GGATG	4 cut(s)	306, 760, 937, 1099
BseLI	CCNNNNNNNGG	4 cut(s)	103, 415, 571, 1130
BseMI	GCAATG	1 cut(s)	761
BseMII	CTCAG	3 cut(s)	581, 1011, 1160
BseNI	ACTGG	2 cut(s)	379, 927
BseRI	GAGGAG	4 cut(s)	140, 798, 924, 1149
BseSI	GKGCMC	1 cut(s)	832
BseXI	GCAGC	4 cut(s)	167, 287, 374, 753
BseYI	CCCAGC	1 cut(s)	144
Bsh1236I	CGCG	4 cut(s)	237, 252, 267, 441
Bsh1285I	CGRYCG	1 cut(s)	445
BshNI	GGYRCC	2 cut(s)	194, 269
BshVI	ATCGAT	1 cut(s)	1108
BsiEI	CGRYCG	1 cut(s)	445
BsiHKAI	GWGCWC	2 cut(s)	402, 579
BsiHKCI	CYCGRG	2 cut(s)	586, 847
BsiSI	CCGG	4 cut(s)	104, 140, 192, 587
BslFI	GGGAC	5 cut(s)	35, 367, 383, 552, 739
BslI	CCNNNNNNNGG	4 cut(s)	103, 415, 571, 1130
BsmAI	GTCTC	3 cut(s)	512, 556, 850
BsmFI	GGGAC	5 cut(s)	35, 367, 383, 552, 739
Bso31I	GGTCTC	2 cut(s)	512, 556
BsoBI	CYCGRG	2 cut(s)	586, 847
Bsp1286I	GDGCHC	4 cut(s)	402, 579, 594, 832
Bsp143I	GATC	5 cut(s)	240, 363, 471, 732, 896
BspCNI	CTCAG	3 cut(s)	580, 1010, 1159
BspDI	ATCGAT	1 cut(s)	1108
BspFNI	CGCG	4 cut(s)	237, 252, 267, 441
BspHI	TCATGA	2 cut(s)	360, 966
BspLI	GGNNCC	5 cut(s)	196, 271, 331, 593, 898
BspMI	ACCTGC	1 cut(s)	687
BspOI	GCTAGC	1 cut(s)	842
BspPI	GGATC	2 cut(s)	891, 904
BspQI	GCTCTTC	1 cut(s)	299
BspT107I	GGYRCC	2 cut(s)	194, 269
BspTNI	GGTCTC	2 cut(s)	512, 556
BsrBI	CCGCTC	1 cut(s)	411
BsrDI	GCAATG	1 cut(s)	761
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	379, 927
BssAI	RCCGGY	1 cut(s)	191
BssMI	GATC	5 cut(s)	240, 363, 471, 732, 896
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	3 cut(s)	534, 900, 983
Bst2UI	CCWGG	2 cut(s)	170, 664
Bst4CI	ACNGT	1 cut(s)	1075
Bst6I	CTCTTC	2 cut(s)	138, 299
BstACI	GRCGYC	1 cut(s)	270
BstC8I	GCNNGC	7 cut(s)	193, 398, 669, 673, 705, 715, 840
BstDEI	CTNAG	3 cut(s)	567, 997, 1146
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	4 cut(s)	306, 760, 937, 1099
BstFNI	CGCG	4 cut(s)	237, 252, 267, 441
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	2 cut(s)	77, 272
BstKTI	GATC	5 cut(s)	243, 366, 474, 735, 899
BstMAI	GTCTC	3 cut(s)	512, 556, 850
BstMBI	GATC	5 cut(s)	240, 363, 471, 732, 896
BstMCI	CGRYCG	1 cut(s)	445
BstMWI	GCNNNNNNNGC	7 cut(s)	258, 267, 393, 444, 677, 794, 821
BstNI	CCWGG	2 cut(s)	170, 664
BstSCI	CCNGG	6 cut(s)	102, 138, 168, 585, 586, 662
BstSLI	GKGCMC	1 cut(s)	832
BstUI	CGCG	4 cut(s)	237, 252, 267, 441
BstV1I	GCAGC	4 cut(s)	167, 287, 374, 753
BstX2I	RGATCY	3 cut(s)	240, 471, 896
BstYI	RGATCY	3 cut(s)	240, 471, 896
Bsu15I	ATCGAT	1 cut(s)	1108
Bsu36I	CCTNAGG	1 cut(s)	567
BsuTUI	ATCGAT	1 cut(s)	1108
BtgI	CCRYGG	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	508
BtrI	CACGTC	1 cut(s)	559
BtsCI	GGATG	4 cut(s)	306, 760, 937, 1099
BtsIMutI	CAGTG	2 cut(s)	1014, 1071
BveI	ACCTGC	1 cut(s)	687
Cac8I	GCNNGC	7 cut(s)	193, 398, 669, 673, 705, 715, 840
CciI	TCATGA	2 cut(s)	360, 966
CfoI	GCGC	2 cut(s)	77, 272
Cfr10I	RCCGGY	1 cut(s)	191
Cfr9I	CCCGGG	1 cut(s)	586
ClaI	ATCGAT	1 cut(s)	1108
Csp6I	GTAC	1 cut(s)	1042
CviAII	CATG	4 cut(s)	361, 869, 967, 1090
CviQI	GTAC	1 cut(s)	1042
DdeI	CTNAG	3 cut(s)	567, 997, 1146
DinI	GGCGCC	1 cut(s)	271
DpnI	GATC	5 cut(s)	242, 365, 473, 734, 898
DpnII	GATC	5 cut(s)	240, 363, 471, 732, 896
DrdI	GACNNNNNNGTC	1 cut(s)	449
DriI	GACNNNNNGTC	1 cut(s)	379
DseDI	GACNNNNNNGTC	1 cut(s)	449
EaeI	YGGCCR	2 cut(s)	711, 1057
Eam1104I	CTCTTC	2 cut(s)	138, 299
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EarI	CTCTTC	2 cut(s)	138, 299
EciI	GGCGGA	2 cut(s)	236, 425
Ecl136II	GAGCTC	1 cut(s)	400
Eco130I	CCWWGG	3 cut(s)	534, 900, 983
Eco24I	GRGCYC	2 cut(s)	402, 594
Eco31I	GGTCTC	2 cut(s)	512, 556
Eco47I	GGWCC	4 cut(s)	172, 283, 463, 636
Eco53kI	GAGCTC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	902
Eco81I	CCTNAGG	1 cut(s)	567
Eco88I	CYCGRG	2 cut(s)	586, 847
EcoICRI	GAGCTC	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	168, 662
EcoT14I	CCWWGG	3 cut(s)	534, 900, 983
EcoT38I	GRGCYC	2 cut(s)	402, 594
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
ErhI	CCWWGG	3 cut(s)	534, 900, 983
FaeI	CATG	4 cut(s)	364, 872, 970, 1093
FaiI	YATR	7 cut(s)	362, 650, 807, 870, 968, 1091, 1161
FaqI	GGGAC	5 cut(s)	35, 367, 383, 552, 739
FatI	CATG	4 cut(s)	360, 868, 966, 1089
FauI	CCCGC	1 cut(s)	392
FbaI	TGATCA	1 cut(s)	732
FblI	GTMKAC	1 cut(s)	480
FokI	GGATG	4 cut(s)	293, 767, 924, 1106
FriOI	GRGCYC	2 cut(s)	402, 594
FspBI	CTAG	3 cut(s)	825, 839, 1085
GlaI	GCGC	2 cut(s)	76, 271
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	578
HaeII	RGCGCY	1 cut(s)	273
HapII	CCGG	4 cut(s)	104, 140, 192, 587
HhaI	GCGC	2 cut(s)	77, 272
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	4 cut(s)	364, 872, 970, 1093
Hin6I	GCGC	2 cut(s)	75, 270
HinP1I	GCGC	2 cut(s)	75, 270
HindIII	AAGCTT	2 cut(s)	500, 1099
HinfI	GANTC	9 cut(s)	86, 118, 124, 130, 540, 659, 890, 923, 1144
HpaII	CCGG	4 cut(s)	104, 140, 192, 587
HphI	GGTGA	2 cut(s)	21, 304
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	9 cut(s)	70, 123, 129, 415, 737, 882, 922, 1000, 1190
Hpy188III	TCNNGA	9 cut(s)	286, 361, 466, 595, 752, 847, 894, 967, 1168
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	6 cut(s)	86, 278, 323, 455, 458, 563
HpyAV	CCTTC	6 cut(s)	172, 241, 415, 877, 1025, 1063
HpyCH4III	ACNGT	1 cut(s)	1075
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	4 cut(s)	303, 390, 769, 1027
HpyF10VI	GCNNNNNNNGC	7 cut(s)	258, 267, 393, 444, 677, 794, 821
HpyF3I	CTNAG	3 cut(s)	567, 997, 1146
HpySE526I	ACGT	1 cut(s)	558
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	4 cut(s)	364, 872, 970, 1093
HspAI	GCGC	2 cut(s)	75, 270
KasI	GGCGCC	1 cut(s)	269
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	732
Kzo9I	GATC	5 cut(s)	240, 363, 471, 732, 896
LguI	GCTCTTC	1 cut(s)	299
LmnI	GCTCC	5 cut(s)	153, 416, 438, 597, 785
Lsp1109I	GCAGC	4 cut(s)	167, 287, 374, 753
LweI	GCATC	4 cut(s)	222, 279, 399, 456
MaeI	CTAG	3 cut(s)	825, 839, 1085
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	1 cut(s)	851
MalI	GATC	5 cut(s)	242, 365, 473, 734, 898
MbiI	CCGCTC	1 cut(s)	411
MboI	GATC	5 cut(s)	240, 363, 471, 732, 896
MboII	GAAGA	7 cut(s)	125, 235, 286, 466, 481, 1078, 1190
MflI	RGATCY	3 cut(s)	240, 471, 896
MhlI	GDGCHC	4 cut(s)	402, 579, 594, 832
MluCI	AATT	6 cut(s)	41, 484, 606, 1016, 1115, 1162
Mly113I	GGCGCC	1 cut(s)	270
MlyI	GAGTC	6 cut(s)	80, 112, 118, 124, 534, 1138
MmeI	TCCRAC	3 cut(s)	93, 146, 152
MroNI	GCCGGC	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	1076
MspA1I	CMGCKG	2 cut(s)	300, 387
MspI	CCGG	4 cut(s)	104, 140, 192, 587
MspR9I	CCNGG	6 cut(s)	104, 140, 170, 587, 588, 664
MvaI	CCWGG	2 cut(s)	170, 664
MvnI	CGCG	4 cut(s)	237, 252, 267, 441
MwoI	GCNNNNNNNGC	7 cut(s)	258, 267, 393, 444, 677, 794, 821
NaeI	GCCGGC	1 cut(s)	193
NarI	GGCGCC	1 cut(s)	270
NciI	CCSGG	4 cut(s)	104, 140, 587, 588
NdeII	GATC	5 cut(s)	240, 363, 471, 732, 896
NgoMIV	GCCGGC	1 cut(s)	191
NheI	GCTAGC	1 cut(s)	838
NlaIII	CATG	4 cut(s)	364, 872, 970, 1093
NlaIV	GGNNCC	5 cut(s)	196, 271, 331, 593, 898
NmeAIII	GCCGAG	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	851
OliI	CACNNNNGTG	1 cut(s)	1076
PaeR7I	CTCGAG	1 cut(s)	847
PagI	TCATGA	2 cut(s)	360, 966
PciSI	GCTCTTC	1 cut(s)	299
PdiI	GCCGGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	3 cut(s)	659, 890, 923
PflFI	GACNNNGTC	1 cut(s)	1124
PleI	GAGTC	6 cut(s)	80, 112, 118, 124, 534, 1138
PluTI	GGCGCC	1 cut(s)	273
PpsI	GAGTC	6 cut(s)	80, 112, 118, 124, 534, 1138
PsiI	TTATAA	1 cut(s)	1161
Psp124BI	GAGCTC	1 cut(s)	402
Psp6I	CCWGG	2 cut(s)	168, 662
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	2 cut(s)	168, 662
PspN4I	GGNNCC	5 cut(s)	196, 271, 331, 593, 898
PsuI	RGATCY	3 cut(s)	240, 471, 896
PsyI	GACNNNGTC	1 cut(s)	1124
RsaI	GTAC	1 cut(s)	1043
RsaNI	GTAC	1 cut(s)	1042
RseI	CAYNNNNRTG	1 cut(s)	1076
SacI	GAGCTC	1 cut(s)	402
SapI	GCTCTTC	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	59
Sau3AI	GATC	5 cut(s)	240, 363, 471, 732, 896
SchI	GAGTC	6 cut(s)	80, 112, 118, 124, 534, 1138
ScrFI	CCNGG	6 cut(s)	104, 140, 170, 587, 588, 664
SduI	GDGCHC	4 cut(s)	402, 579, 594, 832
SfaNI	GCATC	4 cut(s)	222, 279, 399, 456
SfoI	GGCGCC	1 cut(s)	271
Sfr274I	CTCGAG	1 cut(s)	847
SinI	GGWCC	4 cut(s)	172, 283, 463, 636
SlaI	CTCGAG	1 cut(s)	847
SmaI	CCCGGG	1 cut(s)	588
SmiMI	CAYNNNNRTG	1 cut(s)	1076
SmlI	CTYRAG	1 cut(s)	847
SmoI	CTYRAG	1 cut(s)	847
Sse9I	AATT	6 cut(s)	41, 484, 606, 1016, 1115, 1162
SspDI	GGCGCC	1 cut(s)	269
SspI	AATATT	1 cut(s)	1157
SspMI	CTAG	3 cut(s)	825, 839, 1085
SstI	GAGCTC	1 cut(s)	402
StyD4I	CCNGG	6 cut(s)	102, 138, 168, 585, 586, 662
StyI	CCWWGG	3 cut(s)	534, 900, 983
TaaI	ACNGT	1 cut(s)	1075
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	4 cut(s)	615, 629, 848, 1108
TasI	AATT	6 cut(s)	41, 484, 606, 1016, 1115, 1162
TatI	WGTACW	1 cut(s)	1041
TauI	GCSGC	6 cut(s)	191, 252, 270, 327, 330, 441
TfiI	GAWTC	3 cut(s)	659, 890, 923
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	2 cut(s)	1014, 1078
TseFI	GTSAC	1 cut(s)	851
TseI	GCWGC	4 cut(s)	180, 300, 387, 766
Tsp45I	GTSAC	1 cut(s)	851
TspDTI	ATGAA	4 cut(s)	750, 942, 955, 983
TspMI	CCCGGG	1 cut(s)	586
TspRI	CASTG	2 cut(s)	1014, 1078
Tth111I	GACNNNGTC	1 cut(s)	1124
VpaK11BI	GGWCC	4 cut(s)	172, 283, 463, 636
XapI	RAATTY	3 cut(s)	606, 1016, 1115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XhoI	CTCGAG	1 cut(s)	847
XmaI	CCCGGG	1 cut(s)	586
XmiI	GTMKAC	1 cut(s)	480
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	3 cut(s)	825, 839, 1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.