Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002688

Physical Location & Seq

Genomic Coordinates Forward (+)

70709302 .. 70710338

Gene Structure 1037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCGAAGTTTTCTTCTAATCAAGCCACACGCATTCGTTTCTTCGCGCCTTCAATCATCATTCTCGATTTTTTCCGTTTCAAAGCAAGAGAGAGAGGATTCTTGCTTTATTATTATTATTTTTTTGGATTCGGGACAGTGTGTATCAGGACTGCACCGAGTTCAAGAACTCGGATGCCGAGTTTGTCACCCCGAGTTTTGTCAACCCCTTGCCGGCTGCTAAAGCCTTGCCTGGTGTGGTTTTTGACAAGGAGTCGTGCAACTTCTTCCTCAACTTTCCCAAAACATTTAGAGAGACCAAGGGTATTTTGGTTAACTTTCTTGAAGCTCGAATCTCACGCGCTTCAGTCTCTGAGTGCTAACGGTAAGATCCCTTCGGTGTACCTCGTGGGACCCATACTGAACATCAAGAACAATGATAACCAAGTGGGTTCGGAGAAGTCGAAGCAGAAGTCGGAAATCTTGAAGTGGCTTGATGACCAGCCTCCGTTGTCTGTACTGTTTTTGTGCTTCGGGAGCATGGGATGCTTTGGCGAGGACCAAGTAAAAGAGATCGCACACGAACTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

190

Amino Acids

21.83

Weight (kDa)

9.8

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02620 FvH4_2g02630 FvH4_3g12970 FvH4_3g12970 FvH4_3g17180 FvH4_3g17181
malus_domestica	MD05G1246700.v1.1
prunus_persica	Prupe.4G117900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0153371 RchiOBHm_Chr5g0021081 RchiOBHm_Chr5g0021091 RchiOBHm_Chr5g0021101
rosa_laevigata	RLG00000032582 RLG00000032583 RLG00000032584 RLG00000032587
rosa_multiflora	Rmu_co7967648.1_g000001 Rmu_co8022450.1_g000001 Rmu_co8209284.1_g000001 Rmu_co8295101.1_g000001 Rmu_sc0002467.1_g000005 Rmu_sc0041861.1_g000001 Rmu_ssc0000244.1_g000020 Rmu_ssc0000244.1_g000027 Rmu_ssc0000244.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057340 Rroxscaffold_1G00057380
rosa_rugosa	Rorug05G0064300 Rorug05G0064400 Rorug05G0064500 Rorug05G0064700
rosa_samantha	Rh2AG501400 Rh5CG166400 Rh5CG166500 Rh5CG166600 Rh5DG153100 Rh5DG153300 Rh5DG153400
rosa_wichuraiana	Rw5G013670 Rw5G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	47, 341
AclWI	GGATC	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	2 cut(s)	383, 498
AfiI	CCNNNNNNNGG	1 cut(s)	213
AgsI	TTSAA	5 cut(s)	54, 82, 165, 325, 466
AhdI	GACNNNNNGTC	1 cut(s)	252
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
Alw26I	GTCTC	2 cut(s)	289, 354
AlwI	GGATC	1 cut(s)	364
AlwNI	CAGNNNCTG	1 cut(s)	352
Ama87I	CYCGRG	2 cut(s)	192, 566
ApeKI	GCWGC	1 cut(s)	217
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
AspLEI	GCGC	2 cut(s)	49, 343
AspS9I	GGNCC	2 cut(s)	392, 538
AsuHPI	GGTGA	1 cut(s)	180
AvaI	CYCGRG	2 cut(s)	192, 566
AvaII	GGWCC	2 cut(s)	392, 538
BarI	GAAGNNNNNNTAC	2 cut(s)	358, 390
BauI	CACGAG	1 cut(s)	386
BbvI	GCAGC	1 cut(s)	204
BciT130I	CCWGG	1 cut(s)	233
BcoDI	GTCTC	2 cut(s)	289, 354
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	2 cut(s)	392, 538
BmeRI	GACNNNNNGTC	1 cut(s)	252
BmeT110I	CYCGRG	2 cut(s)	192, 566
BmgT120I	GGNCC	2 cut(s)	392, 538
BmiI	GGNNCC	2 cut(s)	393, 394
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	2 cut(s)	165, 515
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse118I	RCCGGY	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	2 cut(s)	180, 530
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	204
BsgI	GTGCAG	1 cut(s)	138
Bsh1236I	CGCG	2 cut(s)	47, 341
BsiHKCI	CYCGRG	2 cut(s)	192, 566
BsiSI	CCGG	1 cut(s)	214
BslFI	GGGAC	2 cut(s)	148, 405
BslI	CCNNNNNNNGG	1 cut(s)	213
BsmAI	GTCTC	2 cut(s)	289, 354
BsmFI	GGGAC	2 cut(s)	148, 405
BsmI	GAATGC	1 cut(s)	33
Bso31I	GGTCTC	1 cut(s)	289
BsoBI	CYCGRG	2 cut(s)	192, 566
Bsp143I	GATC	2 cut(s)	369, 552
BspCNI	CTCAG	1 cut(s)	345
BspFNI	CGCG	2 cut(s)	47, 341
BspLI	GGNNCC	2 cut(s)	393, 394
BspPI	GGATC	1 cut(s)	364
BspTNI	GGTCTC	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	213
BssAI	RCCGGY	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	2 cut(s)	369, 552
BssSI	CACGAG	1 cut(s)	386
BssT1I	CCWWGG	1 cut(s)	299
Bst2BI	CACGAG	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	3 cut(s)	139, 365, 501
BstAPI	GCANNNNNTGC	1 cut(s)	525
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	353
BstF5I	GGATG	2 cut(s)	180, 530
BstFNI	CGCG	2 cut(s)	47, 341
BstHHI	GCGC	2 cut(s)	49, 343
BstKTI	GATC	2 cut(s)	372, 555
BstMAI	GTCTC	2 cut(s)	289, 354
BstMBI	GATC	2 cut(s)	369, 552
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 516, 525
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	231
BstUI	CGCG	2 cut(s)	47, 341
BstV1I	GCAGC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	180, 530
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	215
CaiI	CAGNNNCTG	1 cut(s)	352
CfoI	GCGC	2 cut(s)	49, 343
Cfr10I	RCCGGY	1 cut(s)	213
Cfr13I	GGNCC	2 cut(s)	392, 538
Csp6I	GTAC	2 cut(s)	382, 497
CviAII	CATG	1 cut(s)	520
CviJI	RGCY	6 cut(s)	26, 217, 226, 328, 472, 484
CviKI_1	RGCY	6 cut(s)	26, 217, 226, 328, 472, 484
CviQI	GTAC	2 cut(s)	382, 497
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	2 cut(s)	371, 554
DpnII	GATC	2 cut(s)	369, 552
DriI	GACNNNNNGTC	1 cut(s)	252
Eam1105I	GACNNNNNGTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	289
Eco47I	GGWCC	2 cut(s)	392, 538
Eco57I	CTGAAG	1 cut(s)	329
Eco88I	CYCGRG	2 cut(s)	192, 566
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	1 cut(s)	523
FaiI	YATR	2 cut(s)	398, 521
FaqI	GGGAC	2 cut(s)	148, 405
FatI	CATG	1 cut(s)	519
Fnu4HI	GCNGC	1 cut(s)	218
FokI	GGATG	2 cut(s)	187, 537
Fsp4HI	GCNGC	1 cut(s)	218
GlaI	GCGC	2 cut(s)	48, 342
GluI	GCNGC	1 cut(s)	218
HapII	CCGG	1 cut(s)	214
HhaI	GCGC	2 cut(s)	49, 343
Hin1II	CATG	1 cut(s)	523
Hin6I	GCGC	2 cut(s)	47, 341
HinP1I	GCGC	2 cut(s)	47, 341
HincII	GTYRAC	2 cut(s)	204, 315
HindII	GTYRAC	2 cut(s)	204, 315
HinfI	GANTC	4 cut(s)	99, 129, 253, 332
HpaI	GTTAAC	1 cut(s)	315
HpaII	CCGG	1 cut(s)	214
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	3 cut(s)	204, 315, 382
Hpy188I	TCNGA	4 cut(s)	174, 354, 436, 457
Hpy188III	TCNNGA	8 cut(s)	65, 133, 148, 165, 322, 409, 463, 514
Hpy8I	GTNNAC	3 cut(s)	204, 315, 382
HpyAV	CCTTC	2 cut(s)	60, 384
HpyCH4III	ACNGT	3 cut(s)	139, 365, 501
HpyCH4V	TGCA	2 cut(s)	155, 260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 516, 525
HpyF3I	CTNAG	1 cut(s)	353
Hsp92II	CATG	1 cut(s)	523
HspAI	GCGC	2 cut(s)	47, 341
KflI	GGGWCCC	1 cut(s)	392
KroI	GCCGGC	1 cut(s)	213
KroNI	GCCGGC	1 cut(s)	215
KspAI	GTTAAC	1 cut(s)	315
Kzo9I	GATC	2 cut(s)	369, 552
LmnI	GCTCC	1 cut(s)	516
LpnPI	CCDG	5 cut(s)	133, 218, 227, 245, 494
Lsp1109I	GCAGC	1 cut(s)	204
LweI	GCATC	2 cut(s)	165, 515
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	2 cut(s)	371, 554
MboI	GATC	2 cut(s)	369, 552
MboII	GAAGA	3 cut(s)	6, 34, 258
MflI	RGATCY	1 cut(s)	369
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	5 cut(s)	89, 280, 395, 495, 529
MroNI	GCCGGC	1 cut(s)	213
MseI	TTAA	1 cut(s)	314
MspI	CCGG	1 cut(s)	214
MspR9I	CCNGG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	2 cut(s)	47, 341
MwoI	GCNNNNNNNGC	3 cut(s)	223, 516, 525
NaeI	GCCGGC	1 cut(s)	215
NdeII	GATC	2 cut(s)	369, 552
NgoMIV	GCCGGC	1 cut(s)	213
NlaIII	CATG	1 cut(s)	523
NlaIV	GGNNCC	2 cut(s)	393, 394
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	186
PaeR7I	CTCGAG	1 cut(s)	566
PcsI	WCGNNNNNNNCGW	1 cut(s)	440
PctI	GAATGC	1 cut(s)	33
PdiI	GCCGGC	1 cut(s)	215
PfeI	GAWTC	3 cut(s)	99, 129, 332
PkrI	GCNGC	1 cut(s)	219
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PpuMI	RGGWCCY	1 cut(s)	392
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	393, 394
PspPI	GGNCC	2 cut(s)	392, 538
PspPPI	RGGWCCY	1 cut(s)	392
PspXI	VCTCGAGB	1 cut(s)	566
PstNI	CAGNNNCTG	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	369
RsaI	GTAC	2 cut(s)	383, 498
RsaNI	GTAC	2 cut(s)	382, 497
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	2 cut(s)	369, 552
Sau96I	GGNCC	2 cut(s)	392, 538
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	1 cut(s)	233
SetI	ASST	2 cut(s)	330, 387
SfaNI	GCATC	2 cut(s)	165, 515
Sfr274I	CTCGAG	1 cut(s)	566
SinI	GGWCC	2 cut(s)	392, 538
SlaI	CTCGAG	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	3 cut(s)	139, 365, 501
TaqI	TCGA	5 cut(s)	5, 66, 330, 443, 567
TatI	WGTACW	1 cut(s)	496
TfiI	GAWTC	3 cut(s)	99, 129, 332
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	186
TseI	GCWGC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	186
TspGWI	ACGGA	2 cut(s)	65, 477
TspRI	CASTG	1 cut(s)	144
VpaK11BI	GGWCC	2 cut(s)	392, 538
XcmI	CCANNNNNNNNNTGG	1 cut(s)	306
XhoI	CTCGAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.