Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Reverse (-)

18465295 .. 18468738

Gene Structure 3444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAGGCGTCGGGGAATCTGGAGTACGATTTCTATTGGAACCCAACAAAGTGAAGTCTCATTAACTGAATTATGCTCCTCTACACAGTATGATTTGATACATGTCGCTGCTGGAGATTTACTTAGAGCGGAAATTGCATCTGGGAGTGAAAATGGGAAGCATGCAAGGGCGTACATGGACAAAGGACAATTGGTTCCAGATGAAATAGTTGTTATGATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCGAGAAAAAGGCTGGCTCTTGGATGGATACCCTAGGAGCTCATCGCAAGCAATTGCTCTTAAGGAATTCGGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTCCCTGAAGAGATTCTTGTTGACAGAGTAGTTGGAAGAAGGTTAGATCCTGTTACTGGAAAGATCTACCATCTGAAGTATTCTCCTCCAGAGACCCCAGAGATCGCGGCAAGGCTCACCCAACGTTTTGATGATACAGAAGAAAAGGACCCCGTAATCAGGCCACTATATGAACTGGAGAAAAGTAACTTGGAAGATATTCTAACTGAAATTCCATTGTGGATTAACCTCTCCCGATTACGATTGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

200

Amino Acids

22.78

Weight (kDa)

5.03

Isoelectric Point (pI)

58.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	28 - 161	3e-33	Adenylate kinase
AAA_17	PF13207	28 - 131	5.4e-17	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	354
AccBSI	CCGCTC	1 cut(s)	128
AccII	CGCG	1 cut(s)	458
AciI	CCGC	2 cut(s)	128, 458
AclI	AACGTT	1 cut(s)	475
AclWI	GGATC	2 cut(s)	339, 392
AcsI	RAATTY	2 cut(s)	314, 561
AcuI	CTGAAG	2 cut(s)	378, 446
AcyI	GRCGYC	2 cut(s)	7, 351
AfaI	GTAC	2 cut(s)	25, 173
AfiI	CCNNNNNNNGG	2 cut(s)	407, 510
AflII	CTTAAG	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	100
AjuI	GAANNNNNNNTTGG	2 cut(s)	524, 556
AloI	GAACNNNNNNTCC	2 cut(s)	177, 209
AluBI	AGCT	1 cut(s)	288
AluI	AGCT	1 cut(s)	288
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	2 cut(s)	61, 437
AlwI	GGATC	2 cut(s)	339, 392
Ama87I	CYCGRG	1 cut(s)	249
AoxI	GGCC	1 cut(s)	512
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	2 cut(s)	314, 561
Asp700I	GAANNNNTTC	2 cut(s)	363, 549
AspA2I	CCTAGG	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	499
AsuHPI	GGTGA	2 cut(s)	232, 460
AvaI	CYCGRG	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	499
AvrII	CCTAGG	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	3 cut(s)	211, 266, 429
BciVI	GTATCC	1 cut(s)	269
BcoDI	GTCTC	2 cut(s)	61, 437
BfaI	CTAG	1 cut(s)	282
BfrI	CTTAAG	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	269
BglII	AGATCT	1 cut(s)	414
BisI	GCNGC	2 cut(s)	108, 459
BlnI	CCTAGG	1 cut(s)	281
BlsI	GCNGC	2 cut(s)	109, 460
Bme18I	GGWCC	1 cut(s)	499
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	499
BmiI	GGNNCC	3 cut(s)	40, 195, 501
BmsI	GCATC	1 cut(s)	146
BpmI	CTGGAG	4 cut(s)	40, 132, 423, 548
BsaHI	GRCGYC	2 cut(s)	7, 351
BsaI	GGTCTC	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 510
Bse1I	ACTGG	2 cut(s)	412, 531
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	2 cut(s)	407, 510
BseNI	ACTGG	2 cut(s)	412, 531
BseRI	GAGGAG	2 cut(s)	67, 426
BseXI	GCAGC	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	458
BshFI	GGCC	1 cut(s)	514
BsiHKAI	GWGCWC	1 cut(s)	290
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	329
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	2 cut(s)	407, 510
BsmAI	GTCTC	2 cut(s)	61, 437
BsmFI	GGGAC	1 cut(s)	338
BsnI	GGCC	1 cut(s)	514
Bso31I	GGTCTC	1 cut(s)	437
BsoBI	CYCGRG	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	4 cut(s)	331, 397, 414, 453
BspACI	CCGC	2 cut(s)	128, 458
BspANI	GGCC	1 cut(s)	514
BspFNI	CGCG	1 cut(s)	458
BspLI	GGNNCC	3 cut(s)	40, 195, 501
BspPI	GGATC	2 cut(s)	339, 392
BspTI	CTTAAG	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	437
BsrBI	CCGCTC	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	412, 531
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	4 cut(s)	331, 397, 414, 453
BssNI	GRCGYC	2 cut(s)	7, 351
BssT1I	CCWWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	354
BstACI	GRCGYC	2 cut(s)	7, 351
BstAFI	CTTAAG	1 cut(s)	308
BstC8I	GCNNGC	3 cut(s)	162, 263, 297
BstDEI	CTNAG	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	458
BstKTI	GATC	4 cut(s)	334, 400, 417, 456
BstMAI	GTCTC	2 cut(s)	61, 437
BstMBI	GATC	4 cut(s)	331, 397, 414, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNSI	RCATGY	2 cut(s)	104, 164
BstUI	CGCG	1 cut(s)	458
BstV1I	GCAGC	1 cut(s)	94
BstX2I	RGATCY	3 cut(s)	331, 397, 414
BstYI	RGATCY	3 cut(s)	331, 397, 414
BsuI	GTATCC	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	514
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	277
Cac8I	GCNNGC	3 cut(s)	162, 263, 297
Cfr13I	GGNCC	1 cut(s)	499
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	24, 172
CviAII	CATG	3 cut(s)	101, 161, 175
CviJI	RGCY	8 cut(s)	241, 261, 265, 288, 321, 328, 466, 514
CviKI_1	RGCY	8 cut(s)	241, 261, 265, 288, 321, 328, 466, 514
CviQI	GTAC	2 cut(s)	24, 172
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	4 cut(s)	333, 399, 416, 455
DpnII	GATC	4 cut(s)	331, 397, 414, 453
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	437
Eco47I	GGWCC	1 cut(s)	499
Eco53kI	GAGCTC	1 cut(s)	288
Eco57I	CTGAAG	2 cut(s)	378, 446
Eco88I	CYCGRG	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	499
EcoRI	GAATTC	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	3 cut(s)	104, 164, 178
FaiI	YATR	8 cut(s)	73, 90, 102, 162, 176, 215, 520, 522
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	3 cut(s)	100, 160, 174
Fnu4HI	GCNGC	2 cut(s)	108, 459
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	2 cut(s)	108, 459
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	2 cut(s)	108, 459
GsuI	CTGGAG	4 cut(s)	40, 132, 423, 548
HaeIII	GGCC	1 cut(s)	514
HapII	CCGG	1 cut(s)	329
HgaI	GACGC	1 cut(s)	218
Hin1I	GRCGYC	2 cut(s)	7, 351
Hin1II	CATG	3 cut(s)	104, 164, 178
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	3 cut(s)	15, 245, 364
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	2 cut(s)	232, 460
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	1 cut(s)	426
Hpy188III	TCNNGA	7 cut(s)	19, 197, 249, 251, 347, 440, 585
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	1 cut(s)	384
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4IV	ACGT	2 cut(s)	351, 475
HpyCH4V	TGCA	2 cut(s)	137, 164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	122
HpySE526I	ACGT	2 cut(s)	351, 475
Hsp92I	GRCGYC	2 cut(s)	7, 351
Hsp92II	CATG	3 cut(s)	104, 164, 178
Kzo9I	GATC	4 cut(s)	331, 397, 414, 453
LmnI	GCTCC	2 cut(s)	80, 285
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	146
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	2 cut(s)	351, 475
MaeIII	GTNAC	2 cut(s)	403, 536
MalI	GATC	4 cut(s)	333, 399, 416, 455
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	4 cut(s)	331, 397, 414, 453
MboII	GAAGA	5 cut(s)	335, 371, 399, 503, 557
MfeI	CAATTG	2 cut(s)	188, 300
MflI	RGATCY	3 cut(s)	331, 397, 414
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	6 cut(s)	68, 132, 188, 300, 314, 561
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	3 cut(s)	88, 447, 590
MroXI	GAANNNNTTC	2 cut(s)	363, 549
MseI	TTAA	3 cut(s)	62, 309, 576
MspCI	CTTAAG	1 cut(s)	308
MspI	CCGG	1 cut(s)	329
MunI	CAATTG	2 cut(s)	188, 300
MvnI	CGCG	1 cut(s)	458
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	4 cut(s)	331, 397, 414, 453
NlaIII	CATG	3 cut(s)	104, 164, 178
NlaIV	GGNNCC	3 cut(s)	40, 195, 501
NspI	RCATGY	2 cut(s)	104, 164
PaeI	GCATGC	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	249
PciI	ACATGT	1 cut(s)	100
PdmI	GAANNNNTTC	2 cut(s)	363, 549
PfeI	GAWTC	3 cut(s)	15, 245, 364
PkrI	GCNGC	2 cut(s)	109, 460
PpuMI	RGGWCCY	1 cut(s)	499
PscI	ACATGT	1 cut(s)	100
Psp124BI	GAGCTC	1 cut(s)	290
Psp1406I	AACGTT	1 cut(s)	475
Psp5II	RGGWCCY	1 cut(s)	499
PspN4I	GGNNCC	3 cut(s)	40, 195, 501
PspPI	GGNCC	1 cut(s)	499
PspPPI	RGGWCCY	1 cut(s)	499
PsuI	RGATCY	3 cut(s)	331, 397, 414
RsaI	GTAC	2 cut(s)	25, 173
RsaNI	GTAC	2 cut(s)	24, 172
SacI	GAGCTC	1 cut(s)	290
SaqAI	TTAA	3 cut(s)	62, 309, 576
SatI	GCNGC	2 cut(s)	108, 459
Sau3AI	GATC	4 cut(s)	331, 397, 414, 453
Sau96I	GGNCC	1 cut(s)	499
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	5 cut(s)	290, 354, 395, 478, 582
SfaNI	GCATC	1 cut(s)	146
Sfr274I	CTCGAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	499
SlaI	CTCGAG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	249, 308
SmoI	CTYRAG	2 cut(s)	249, 308
SphI	GCATGC	1 cut(s)	164
Sse9I	AATT	6 cut(s)	68, 132, 188, 300, 314, 561
SsiI	CCGC	2 cut(s)	128, 458
SspMI	CTAG	1 cut(s)	282
SstI	GAGCTC	1 cut(s)	290
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	87
TaiI	ACGT	2 cut(s)	354, 478
TaqI	TCGA	2 cut(s)	250, 324
TasI	AATT	6 cut(s)	68, 132, 188, 300, 314, 561
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	3 cut(s)	15, 245, 364
Tru1I	TTAA	3 cut(s)	62, 309, 576
Tru9I	TTAA	3 cut(s)	62, 309, 576
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	3 cut(s)	216, 328, 537
Vha464I	CTTAAG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	499
XapI	RAATTY	2 cut(s)	314, 561
XceI	RCATGY	2 cut(s)	104, 164
XhoI	CTCGAG	1 cut(s)	249
XmaJI	CCTAGG	1 cut(s)	281
XmnI	GAANNNNTTC	2 cut(s)	363, 549
XspI	CTAG	1 cut(s)	282
ZraI	GACGTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.