RchiOBHm_Chr1g0340821

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002690
Physical Location & Seq
Reverse (-)
32393513 .. 32394094
582 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGATGAACAACAAAATGGGAGCTAATGAAAGCAAGGAAAGCTCTGGACAGGGTGAGAATGGTGGTGCGTCGTCATCCGGTTACTCTTGGTTCTCCAAAGCAGCAGTTGCTGCCGGCGCTATTGCGGGACTAGCTACTGCGGCTTTGGCGGTAGCTGAACTCGTTTCGGGTTCAACTTCCTTAGAAGAGGAGAAGAAAACCATGAAGGCGCCCGGAAGAGACGAGAGGATTTACAGGGAGGACTTTGAGCGTGACCCTAAATCCTATTTCTCAGGCTTGCGCAATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.14

Weight (kDa)

6.28

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 281
AccB1I GGYRCC 1 cut(s) 208
AciI CCGC 3 cut(s) 125, 140, 149
AcyI GRCGYC 1 cut(s) 209
AgsI TTSAA 1 cut(s) 174
AluBI AGCT 4 cut(s) 23, 42, 134, 155
AluI AGCT 4 cut(s) 23, 42, 134, 155
Alw26I GTCTC 1 cut(s) 213
AlwNI CAGNNNCTG 1 cut(s) 110
ApeKI GCWGC 2 cut(s) 101, 110
AspLEI GCGC 3 cut(s) 119, 211, 282
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 65
BanI GGYRCC 1 cut(s) 208
BbvI GCAGC 2 cut(s) 97, 113
BcnI CCSGG 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 1 cut(s) 131
BfoI RGCGCY 2 cut(s) 120, 212
BisI GCNGC 3 cut(s) 102, 111, 141
BlsI GCNGC 3 cut(s) 103, 112, 142
Bme1390I CCNGG 1 cut(s) 213
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 209
BsaWI WCCGGW 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 113
BseGI GGATG 1 cut(s) 74
BseMII CTCAG 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 2 cut(s) 97, 113
BshNI GGYRCC 1 cut(s) 208
BsiSI CCGG 3 cut(s) 78, 114, 213
BslFI GGGAC 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 213
BsmBI CGTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 141
BspACI CCGC 3 cut(s) 125, 140, 149
BspCNI CTCAG 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 210
BspT107I GGYRCC 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssNI GRCGYC 1 cut(s) 209
Bst6I CTCTTC 2 cut(s) 180, 211
BstACI GRCGYC 1 cut(s) 209
BstAPI GCANNNNNTGC 2 cut(s) 107, 110
BstC8I GCNNGC 2 cut(s) 115, 278
BstDEI CTNAG 2 cut(s) 181, 271
BstF5I GGATG 1 cut(s) 74
BstH2I RGCGCY 2 cut(s) 120, 212
BstHHI GCGC 3 cut(s) 119, 211, 282
BstMAI GTCTC 1 cut(s) 213
BstMWI GCNNNNNNNGC 7 cut(s) 39, 107, 110, 116, 131, 140, 146
BstSCI CCNGG 1 cut(s) 211
BstV1I GCAGC 2 cut(s) 97, 113
BtsCI GGATG 1 cut(s) 74
Cac8I GCNNGC 2 cut(s) 115, 278
CaiI CAGNNNCTG 1 cut(s) 110
CfoI GCGC 3 cut(s) 119, 211, 282
Cfr10I RCCGGY 1 cut(s) 113
CseI GACGC 1 cut(s) 57
CviAII CATG 1 cut(s) 202
CviJI RGCY 6 cut(s) 23, 42, 134, 143, 155, 276
CviKI_1 RGCY 6 cut(s) 23, 42, 134, 143, 155, 276
DdeI CTNAG 2 cut(s) 181, 271
DinI GGCGCC 1 cut(s) 210
Eam1104I CTCTTC 2 cut(s) 180, 211
EarI CTCTTC 2 cut(s) 180, 211
EgeI GGCGCC 1 cut(s) 210
EheI GGCGCC 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 213
FaeI CATG 1 cut(s) 205
FaiI YATR 1 cut(s) 203
FaqI GGGAC 1 cut(s) 141
FatI CATG 1 cut(s) 201
FauI CCCGC 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 102, 111, 141
FokI GGATG 1 cut(s) 61
Fsp4HI GCNGC 3 cut(s) 102, 111, 141
FspBI CTAG 1 cut(s) 131
FspI TGCGCA 1 cut(s) 281
GlaI GCGC 3 cut(s) 118, 210, 281
GluI GCNGC 3 cut(s) 102, 111, 141
HaeII RGCGCY 2 cut(s) 120, 212
HapII CCGG 3 cut(s) 78, 114, 213
HgaI GACGC 1 cut(s) 57
HhaI GCGC 3 cut(s) 119, 211, 282
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 1 cut(s) 205
Hin6I GCGC 3 cut(s) 117, 209, 280
HinP1I GCGC 3 cut(s) 117, 209, 280
HpaII CCGG 3 cut(s) 78, 114, 213
HphI GGTGA 1 cut(s) 65
Hpy188III TCNNGA 1 cut(s) 45
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 7 cut(s) 39, 107, 110, 116, 131, 140, 146
HpyF3I CTNAG 2 cut(s) 181, 271
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 1 cut(s) 205
HspAI GCGC 3 cut(s) 117, 209, 280
KasI GGCGCC 1 cut(s) 208
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 7 cut(s) 30, 35, 91, 127, 220, 226, 258
Lsp1109I GCAGC 2 cut(s) 97, 113
MaeI CTAG 1 cut(s) 131
MaeIII GTNAC 2 cut(s) 80, 251
MboII GAAGA 3 cut(s) 197, 205, 228
Mly113I GGCGCC 1 cut(s) 209
MnlI CCTC 3 cut(s) 181, 219, 232
MroNI GCCGGC 1 cut(s) 113
MspI CCGG 3 cut(s) 78, 114, 213
MspR9I CCNGG 1 cut(s) 213
MwoI GCNNNNNNNGC 7 cut(s) 39, 107, 110, 116, 131, 140, 146
NaeI GCCGGC 1 cut(s) 115
NarI GGCGCC 1 cut(s) 209
NciI CCSGG 1 cut(s) 213
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 251
NsbI TGCGCA 1 cut(s) 281
PdiI GCCGGC 1 cut(s) 115
PkrI GCNGC 3 cut(s) 103, 112, 142
PluTI GGCGCC 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 210
PstNI CAGNNNCTG 1 cut(s) 110
SatI GCNGC 3 cut(s) 102, 111, 141
ScrFI CCNGG 1 cut(s) 213
SetI ASST 4 cut(s) 25, 44, 136, 157
SfoI GGCGCC 1 cut(s) 210
SsiI CCGC 3 cut(s) 125, 140, 149
SspDI GGCGCC 1 cut(s) 208
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 211
TauI GCSGC 1 cut(s) 143
TseFI GTSAC 1 cut(s) 251
TseI GCWGC 2 cut(s) 101, 110
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 3 cut(s) 20, 42, 218
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.